Rmu_sc0010460.1_g000019

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010460.1
OG0000393
Physical Location & Seq
Reverse (-)
71289 .. 71594
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010460.1_g000019.1.cds

Sequence Viewer

Length: 306 bp
atgtgggagaaattacaggaactttatgcactggaagcaagagtgattgaagtagcaagtatgccgccaattgggtgtgtaccagcacagagaacactaggtggtgccatagagagcgcctgcgatgaggctgagaaccaagtagcaatcctctttaactcgaagctctccgcccttttaaactccctcaataagagacttccagaagcacaactcatttacgttgacatatataaccctttgttgtccattatccaggagcttgctcaaaatggtaatctcagctgcattttcattctatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

101

Amino Acids

11.1

Weight (kDa)

4.48

Isoelectric Point (pI)

54.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 104
AciI CCGC 2 cut(s) 65, 171
AdeI CACNNNGTG 1 cut(s) 101
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 3 cut(s) 166, 262, 285
AluI AGCT 3 cut(s) 166, 262, 285
Alw26I GTCTC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 119
BanI GGYRCC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 120
BisI GCNGC 2 cut(s) 65, 286
BlsI GCNGC 2 cut(s) 66, 287
Bme1390I CCNGG 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 257
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 2 cut(s) 123, 295
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 272
BshNI GGYRCC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 190
BspACI CCGC 2 cut(s) 65, 171
BspCNI CTCAG 2 cut(s) 124, 294
BspLI GGNNCC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 104
BsrI ACTGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 121, 264
BstDEI CTNAG 2 cut(s) 132, 281
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 272
BtgZI GCGATG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 121, 264
CfoI GCGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 80
CviJI RGCY 4 cut(s) 131, 166, 262, 285
CviKI_1 RGCY 4 cut(s) 131, 166, 262, 285
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 2 cut(s) 132, 281
DraI TTTAAA 1 cut(s) 180
DraIII CACNNNGTG 1 cut(s) 101
EciI GGCGGA 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 255
FaiI YATR 6 cut(s) 27, 62, 110, 230, 232, 234
Fnu4HI GCNGC 2 cut(s) 65, 286
Fsp4HI GCNGC 2 cut(s) 65, 286
FspBI CTAG 1 cut(s) 98
GlaI GCGC 1 cut(s) 118
GluI GCNGC 2 cut(s) 65, 286
HaeII RGCGCY 1 cut(s) 120
HhaI GCGC 1 cut(s) 119
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
Hpy166II GTNNAC 2 cut(s) 80, 226
Hpy188III TCNNGA 2 cut(s) 203, 303
Hpy8I GTNNAC 2 cut(s) 80, 226
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 29, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 132, 281
HpySE526I ACGT 1 cut(s) 222
HspAI GCGC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 7 cut(s) 2, 17, 96, 133, 216, 242, 269
Lsp1109I GCAGC 1 cut(s) 272
MaeI CTAG 1 cut(s) 98
MaeII ACGT 1 cut(s) 222
MfeI CAATTG 1 cut(s) 69
MluCI AATT 2 cut(s) 11, 69
MnlI CCTC 3 cut(s) 121, 161, 197
MseI TTAA 2 cut(s) 156, 179
MspA1I CMGCKG 1 cut(s) 285
MspR9I CCNGG 1 cut(s) 257
MunI CAATTG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 106
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 2 cut(s) 66, 287
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 106
PvuII CAGCTG 1 cut(s) 285
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 156, 179
SatI GCNGC 2 cut(s) 65, 286
ScrFI CCNGG 1 cut(s) 257
SetI ASST 5 cut(s) 103, 168, 225, 264, 287
Sse9I AATT 2 cut(s) 11, 69
SsiI CCGC 2 cut(s) 65, 171
SspMI CTAG 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 255
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 161
TasI AATT 2 cut(s) 11, 69
TauI GCSGC 1 cut(s) 67
Tru1I TTAA 2 cut(s) 156, 179
Tru9I TTAA 2 cut(s) 156, 179
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 283
TspRI CASTG 1 cut(s) 36
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.