FvH4_1g11390

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000393
Physical Location & Seq
Reverse (-)
6205858 .. 6208136
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11390.t1

Sequence Viewer

Length: 1086 bp
ATGATGAATTTTCTCACCCAAAAACAAACTTCTTTCTTTCCAGTCATCATTGTTACATTCATCATCTATCACAGTGCTGCTGCCTTGACGCTACCGAAAAATGTAACGATTCCGGCAGTGATTGTTTGGGGAGATTCAATAGTGGATCCCGGAAACAACAATGTAGTCAACACTATAGTAAAATGCAACTTTGAACCTTATGGGATGGACTACAATGGAGGAGAGCCTACTGGAAGGTTTAGCAATGGAAGAGTCCCCTCGGACTTGATAGCTGAAGAACTTGGAATCAAGAAGATTTTACCGGCTTATCTGGATCCGAACCTGCAGACTGAAGACCTACTTACTGGTGTAAGTTTTGCCTCTGGTGGTTCTGGTTATGATCCCCTCACTCCCAAAATAGTGAACGTGTTATCATTATCAGATCAAATAGAGCTGTTCAAAGAGTACAAAAGCAAAATAGATGCAGCAGTTGGGGTGGCAAGAAGAAACATCATAGTGTCAAAAGGAATACACATTGTGTGCATAGGAAGTGATGACATTGCAAACACTTACCTCTCTACACCATTCAGGAGCCCTCACTATGATATTCCAGCCTATACAGATCTCTTGGCCTCTTCAGCTTCAAAATTTTTTCAGGCACTTTATGGACAAGGAGCAAGAAAAATTGGAGTAGTAGGTATACCAGCAATCGGGTGTGTGCCATCACAGAGGACACTGAGTGGAGATATAAAGAGAGGGTGTTCAGCCAAAGCCAATAAAGCAGCTAGCCTCTTCAACACCAAGCTCATTGCTCTATTAGAATCTCTCAACAAGAAGCTTCCACAAGCAAAGTTTGTCTACTTTGATATCTATAATCCATCGGTTTCCCTCATCCAAAATCCTTCTAAATATGGATTTGAAGTGGTGAATAAAGGGTGCTGTGGGACTGGAAACATAGAGGTCAGCATTCTTTGTACTCGTTTCTCACTGGGAACTTGCAGCGATCCATCGAAATACATATTCTGGGACAGTTACCATCCCACAGAGAAGGCATACGAGACCCTTGTCCCCATGGCTTTCGATAAGGAAATTCAAAAATTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

362

Amino Acids

39.39

Weight (kDa)

8.29

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 42 - 347 1.7e-31 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 330
AccI GTMKAC 2 cut(s) 679, 837
AclWI GGATC 6 cut(s) 140, 153, 308, 321, 374, 977
AcsI RAATTY 3 cut(s) 7, 626, 1068
AcuI CTGAAG 3 cut(s) 294, 351, 600
AdeI CACNNNGTG 2 cut(s) 517, 719
AfaI GTAC 2 cut(s) 446, 955
AfiI CCNNNNNNNGG 1 cut(s) 689
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 7 cut(s) 138, 194, 439, 624, 775, 899, 1073
AluBI AGCT 6 cut(s) 272, 433, 620, 764, 784, 817
AluI AGCT 6 cut(s) 272, 433, 620, 764, 784, 817
Alw26I GTCTC 1 cut(s) 1031
AlwI GGATC 6 cut(s) 140, 153, 308, 321, 374, 977
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 5 cut(s) 77, 80, 464, 761, 978
ApoI RAATTY 3 cut(s) 7, 626, 1068
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 7, 916
AsuNHI GCTAGC 1 cut(s) 764
BamHI GGATCC 2 cut(s) 145, 313
BanII GRGCYC 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 339
BbvI GCAGC 5 cut(s) 64, 67, 476, 773, 990
BccI CCATC 5 cut(s) 199, 709, 865, 994, 1023
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 1031
BfaI CTAG 1 cut(s) 765
BfmI CTRYAG 2 cut(s) 174, 323
BfuAI ACCTGC 1 cut(s) 330
BglII AGATCT 1 cut(s) 601
BisI GCNGC 5 cut(s) 78, 81, 465, 762, 979
BlsI GCNGC 5 cut(s) 79, 82, 466, 763, 980
Bme1390I CCNGG 1 cut(s) 150
BmiI GGNNCC 3 cut(s) 147, 315, 572
BmrFI CCNGG 1 cut(s) 150
BmrI ACTGGG 1 cut(s) 977
BmsI GCATC 1 cut(s) 451
BmtI GCTAGC 1 cut(s) 768
BmuI ACTGGG 1 cut(s) 977
BoxI GACNNNNGTC 1 cut(s) 1043
BpiI GAAGAC 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 1031
BsaJI CCNNGG 2 cut(s) 258, 1050
Bsc4I CCNNNNNNNGG 1 cut(s) 689
Bse118I RCCGGY 1 cut(s) 301
Bse1I ACTGG 5 cut(s) 41, 235, 349, 931, 972
Bse3DI GCAATG 3 cut(s) 250, 537, 786
BseDI CCNNGG 2 cut(s) 258, 1050
BseGI GGATG 3 cut(s) 210, 870, 1015
BseLI CCNNNNNNNGG 1 cut(s) 689
BseMI GCAATG 3 cut(s) 250, 537, 786
BseMII CTCAG 1 cut(s) 707
BseNI ACTGG 5 cut(s) 41, 235, 349, 931, 972
BseRI GAGGAG 1 cut(s) 234
BseXI GCAGC 5 cut(s) 64, 67, 476, 773, 990
BshFI GGCC 1 cut(s) 611
BsiSI CCGG 3 cut(s) 113, 150, 302
BslFI GGGAC 4 cut(s) 239, 937, 1019, 1031
BslI CCNNNNNNNGG 1 cut(s) 689
BsmAI GTCTC 1 cut(s) 1031
BsmFI GGGAC 4 cut(s) 239, 937, 1019, 1031
BsmI GAATGC 1 cut(s) 945
BsnI GGCC 1 cut(s) 611
Bso31I GGTCTC 1 cut(s) 1031
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 6 cut(s) 145, 313, 379, 421, 601, 982
Bsp19I CCATGG 1 cut(s) 1050
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 1 cut(s) 708
BspLI GGNNCC 3 cut(s) 147, 315, 572
BspMAI CTGCAG 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 330
BspOI GCTAGC 1 cut(s) 768
BspPI GGATC 6 cut(s) 140, 153, 308, 321, 374, 977
BspTNI GGTCTC 1 cut(s) 1031
BsrDI GCAATG 3 cut(s) 250, 537, 786
BsrFI RCCGGY 1 cut(s) 301
BsrI ACTGG 5 cut(s) 41, 235, 349, 931, 972
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 2 cut(s) 258, 1050
BssMI GATC 6 cut(s) 145, 313, 379, 421, 601, 982
BssNAI GTATAC 1 cut(s) 680
BssT1I CCWWGG 1 cut(s) 1050
Bst1107I GTATAC 1 cut(s) 680
Bst4CI ACNGT 2 cut(s) 74, 1010
Bst6I CTCTTC 3 cut(s) 244, 619, 776
BstC8I GCNNGC 1 cut(s) 766
BstDEI CTNAG 1 cut(s) 716
BstDSI CCRYGG 1 cut(s) 1050
BstF5I GGATG 3 cut(s) 210, 870, 1015
BstKTI GATC 6 cut(s) 148, 316, 382, 424, 604, 985
BstMAI GTCTC 1 cut(s) 1031
BstMBI GATC 6 cut(s) 145, 313, 379, 421, 601, 982
BstMWI GCNNNNNNNGC 2 cut(s) 617, 758
BstPAI GACNNNNGTC 1 cut(s) 1043
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 174, 323
BstV1I GCAGC 5 cut(s) 64, 67, 476, 773, 990
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 3 cut(s) 145, 313, 601
BstYI RGATCY 3 cut(s) 145, 313, 601
BstZ17I GTATAC 1 cut(s) 680
BsuRI GGCC 1 cut(s) 611
BtgI CCRYGG 1 cut(s) 1050
BtsCI GGATG 3 cut(s) 210, 870, 1015
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 4 cut(s) 79, 123, 713, 965
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 1 cut(s) 766
Cfr10I RCCGGY 1 cut(s) 301
CseI GACGC 1 cut(s) 97
Csp6I GTAC 2 cut(s) 445, 954
CviAII CATG 1 cut(s) 1051
CviQI GTAC 2 cut(s) 445, 954
DdeI CTNAG 1 cut(s) 716
DpnI GATC 6 cut(s) 147, 315, 381, 423, 603, 984
DpnII GATC 6 cut(s) 145, 313, 379, 421, 601, 982
DraIII CACNNNGTG 2 cut(s) 517, 719
Eam1104I CTCTTC 3 cut(s) 244, 619, 776
EarI CTCTTC 3 cut(s) 244, 619, 776
Eco130I CCWWGG 1 cut(s) 1050
Eco24I GRGCYC 1 cut(s) 575
Eco31I GGTCTC 1 cut(s) 1031
Eco32I GATATC 1 cut(s) 847
Eco57I CTGAAG 3 cut(s) 294, 351, 600
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 1 cut(s) 1050
EcoT38I GRGCYC 1 cut(s) 575
ErhI CCWWGG 1 cut(s) 1050
FaeI CATG 1 cut(s) 1054
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 4 cut(s) 239, 937, 1019, 1031
FatI CATG 1 cut(s) 1050
FblI GTMKAC 2 cut(s) 679, 837
Fnu4HI GCNGC 5 cut(s) 78, 81, 465, 762, 979
FokI GGATG 3 cut(s) 217, 857, 1002
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 5 cut(s) 78, 81, 465, 762, 979
FspBI CTAG 1 cut(s) 765
GluI GCNGC 5 cut(s) 78, 81, 465, 762, 979
HaeIII GGCC 1 cut(s) 611
HapII CCGG 3 cut(s) 113, 150, 302
HgaI GACGC 1 cut(s) 97
Hin1II CATG 1 cut(s) 1054
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 5 cut(s) 109, 134, 252, 285, 800
HpaII CCGG 3 cut(s) 113, 150, 302
HphI GGTGA 2 cut(s) 7, 916
Hpy166II GTNNAC 4 cut(s) 169, 403, 680, 838
Hpy188I TCNGA 4 cut(s) 262, 318, 421, 1085
Hpy188III TCNNGA 3 cut(s) 289, 311, 568
Hpy8I GTNNAC 4 cut(s) 169, 403, 680, 838
HpyAV CCTTC 3 cut(s) 228, 891, 1021
HpyCH4III ACNGT 2 cut(s) 74, 1010
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 6 cut(s) 186, 325, 464, 522, 542, 978
HpyF10VI GCNNNNNNNGC 2 cut(s) 617, 758
HpyF3I CTNAG 1 cut(s) 716
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 1 cut(s) 1054
Kzo9I GATC 6 cut(s) 145, 313, 379, 421, 601, 982
LmnI GCTCC 2 cut(s) 570, 653
Lsp1109I GCAGC 5 cut(s) 64, 67, 476, 773, 990
LweI GCATC 1 cut(s) 451
MaeI CTAG 1 cut(s) 765
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 3 cut(s) 52, 103, 1010
MalI GATC 6 cut(s) 147, 315, 381, 423, 603, 984
MboI GATC 6 cut(s) 145, 313, 379, 421, 601, 982
MboII GAAGA 7 cut(s) 261, 287, 304, 344, 495, 606, 763
MflI RGATCY 3 cut(s) 145, 313, 601
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 5 cut(s) 7, 626, 663, 1068, 1076
MlyI GAGTC 1 cut(s) 261
MslI CAYNNNNRTG 1 cut(s) 494
MspI CCGG 3 cut(s) 113, 150, 302
MspR9I CCNGG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 945
MwoI GCNNNNNNNGC 2 cut(s) 617, 758
NciI CCSGG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 1050
NdeII GATC 6 cut(s) 145, 313, 379, 421, 601, 982
NheI GCTAGC 1 cut(s) 764
NlaIII CATG 1 cut(s) 1054
NlaIV GGNNCC 3 cut(s) 147, 315, 572
PctI GAATGC 1 cut(s) 945
PfeI GAWTC 4 cut(s) 109, 134, 285, 800
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 5 cut(s) 79, 82, 466, 763, 980
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
PshAI GACNNNNGTC 1 cut(s) 1043
PspN4I GGNNCC 3 cut(s) 147, 315, 572
PstI CTGCAG 1 cut(s) 327
PsuI RGATCY 3 cut(s) 145, 313, 601
RsaI GTAC 2 cut(s) 446, 955
RsaNI GTAC 2 cut(s) 445, 954
RseI CAYNNNNRTG 1 cut(s) 494
SatI GCNGC 5 cut(s) 78, 81, 465, 762, 979
Sau3AI GATC 6 cut(s) 145, 313, 379, 421, 601, 982
SchI GAGTC 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 575
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 2 cut(s) 174, 323
SmiMI CAYNNNNRTG 1 cut(s) 494
Sse9I AATT 5 cut(s) 7, 626, 663, 1068, 1076
SspMI CTAG 1 cut(s) 765
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 1 cut(s) 1050
TaaI ACNGT 2 cut(s) 74, 1010
TaiI ACGT 1 cut(s) 408
TaqI TCGA 2 cut(s) 989, 1059
TasI AATT 5 cut(s) 7, 626, 663, 1068, 1076
TatI WGTACW 2 cut(s) 444, 953
TfiI GAWTC 4 cut(s) 109, 134, 285, 800
TscAI CASTG 4 cut(s) 79, 123, 720, 972
TseI GCWGC 5 cut(s) 77, 80, 464, 761, 978
TspDTI ATGAA 2 cut(s) 20, 49
TspRI CASTG 4 cut(s) 79, 123, 720, 972
XapI RAATTY 3 cut(s) 7, 626, 1068
XmiI GTMKAC 2 cut(s) 679, 837
XspI CTAG 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.