Rmu_sc0008564.1_g000011

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008564.1
OG0000393
Physical Location & Seq
Reverse (-)
36654 .. 38134
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008564.1_g000011.1.cds

Sequence Viewer

Length: 1089 bp
atggcttttctctccccaaaaattcttccttcagcttcatctgtcagagtttctgtgattatcttatttatattgctgtcccataatgttgctgctataacactacccaaaaatggaacaactccagcggtgttttcttttggagattcaatattggatactggcaataacgattacctcatttctatgaccaaaagcaatttcccaccttatgggagagactttatgggaggaatgcctacaggaaggtttagcaatggaagagtcccctcagacttcgttgctgaagaattaggagtgaagaagatgttgccggcttatctggatccgaatttgcagcttcaagacctacttactggtgtatgttttgcctcaggaggttcaggatttgaccctctcactcccaaattacagtctggcatttcattatcagatcaattagacttcttcaaagaatacaaaaggaggataactacagcagttggggaggaaagaacagccactataatatcaaaaagtgtatacgttgtctccgttggaagcaatgacattgcaaatacttatttctctacaccactgaggagctctcactatgacattccagcttatacagatctcctgctcgaatcagcaataaagaagagattacaggaactttatgcactgggagcgagagtcattggagtattcaattttccaccacttgggtgcttgccatcacagagaacacagcatggaggcatagtgagggcgtgctacgaggccgagaaccaagcagcaatcctcttcaactctaagctctccccccaaatagattccctcaataagagacttccagaagcagatgtcatttaccttgatatctatacccctttgctttccatgatccaaaaccctgctcaatatggatttgaagtggtggataaaggatgctgtggaacaggatatattgaggctggtcctttgtgtaacaaagactccccaggtacttgcagtgacccgtcaaagtacctattctgggatgcttaccatcccacggagacaggatacaggttcctcacctctatgatttccaaaactggaaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

362

Amino Acids

39.52

Weight (kDa)

6.12

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 212, 704
AccI GTMKAC 1 cut(s) 522
AciI CCGC 1 cut(s) 128
AclWI GGATC 3 cut(s) 320, 333, 880
AcsI RAATTY 2 cut(s) 21, 331
AcuI CTGAAG 2 cut(s) 15, 306
AfaI GTAC 2 cut(s) 988, 1010
AfiI CCNNNNNNNGG 5 cut(s) 113, 212, 704, 1018, 1036
AgsI TTSAA 6 cut(s) 150, 344, 451, 691, 790, 914
AjnI CCWGG 1 cut(s) 982
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AleI CACNNNNGTG 1 cut(s) 706
AluBI AGCT 5 cut(s) 35, 340, 585, 605, 799
AluI AGCT 5 cut(s) 35, 340, 585, 605, 799
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 4 cut(s) 213, 535, 823, 1034
AlwI GGATC 3 cut(s) 320, 333, 880
AoxI GGCC 1 cut(s) 762
ApeKI GCWGC 3 cut(s) 92, 337, 776
ApoI RAATTY 2 cut(s) 21, 331
AspS9I GGNCC 1 cut(s) 959
AsuHPI GGTGA 1 cut(s) 1051
AvaII GGWCC 1 cut(s) 959
AxyI CCTNAGG 1 cut(s) 373
BamHI GGATCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 587
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 3 cut(s) 79, 349, 788
BccI CCATC 2 cut(s) 724, 1038
BciT130I CCWGG 1 cut(s) 984
BciVI GTATCC 2 cut(s) 151, 1040
BcoDI GTCTC 4 cut(s) 213, 535, 823, 1034
BfmI CTRYAG 2 cut(s) 240, 474
BfuI GTATCC 2 cut(s) 151, 1040
BglII AGATCT 1 cut(s) 613
BisI GCNGC 3 cut(s) 93, 338, 777
BlsI GCNGC 3 cut(s) 94, 339, 778
Bme1390I CCNGG 1 cut(s) 984
Bme18I GGWCC 1 cut(s) 959
BmgT120I GGNCC 1 cut(s) 959
BmiI GGNNCC 2 cut(s) 327, 1055
BmrFI CCNGG 1 cut(s) 984
BmrI ACTGGG 1 cut(s) 674
BmsI GCATC 2 cut(s) 920, 1012
BmuI ACTGGG 1 cut(s) 674
BplI GAGNNNNNCTC 2 cut(s) 571, 603
BpmI CTGGAG 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 982, 1035
BsaXI ACNNNNNCTCC 8 cut(s) 515, 545, 660, 690, 729, 759, 962, 992
Bsc4I CCNNNNNNNGG 5 cut(s) 113, 212, 704, 1018, 1036
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 4 cut(s) 166, 361, 669, 1084
Bse21I CCTNAGG 1 cut(s) 373
Bse3DI GCAATG 3 cut(s) 262, 549, 550
BseBI CCWGG 1 cut(s) 984
BseDI CCNNGG 2 cut(s) 982, 1035
BseGI GGATG 3 cut(s) 935, 1027, 1030
BseLI CCNNNNNNNGG 5 cut(s) 113, 212, 704, 1018, 1036
BseMI GCAATG 3 cut(s) 262, 549, 550
BseMII CTCAG 3 cut(s) 285, 387, 569
BseNI ACTGG 4 cut(s) 166, 361, 669, 1084
BseRI GAGGAG 1 cut(s) 595
BseXI GCAGC 3 cut(s) 79, 349, 788
BshFI GGCC 1 cut(s) 764
BsiHKAI GWGCWC 1 cut(s) 587
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 2 cut(s) 64, 251
BslI CCNNNNNNNGG 5 cut(s) 113, 212, 704, 1018, 1036
BsmAI GTCTC 4 cut(s) 213, 535, 823, 1034
BsmFI GGGAC 2 cut(s) 64, 251
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 1 cut(s) 764
Bsp1286I GDGCHC 1 cut(s) 587
Bsp143I GATC 4 cut(s) 325, 433, 613, 885
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 764
BspCNI CTCAG 3 cut(s) 284, 386, 570
BspLI GGNNCC 2 cut(s) 327, 1055
BspPI GGATC 3 cut(s) 320, 333, 880
BsrDI GCAATG 3 cut(s) 262, 549, 550
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 4 cut(s) 166, 361, 669, 1084
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 982, 1035
BssMI GATC 4 cut(s) 325, 433, 613, 885
BssNAI GTATAC 1 cut(s) 523
Bst1107I GTATAC 1 cut(s) 523
Bst2UI CCWGG 1 cut(s) 984
Bst4CI ACNGT 1 cut(s) 414
Bst6I CTCTTC 3 cut(s) 256, 635, 791
BstC8I GCNNGC 3 cut(s) 315, 713, 754
BstDEI CTNAG 4 cut(s) 271, 373, 578, 795
BstDSI CCRYGG 1 cut(s) 1035
BstF5I GGATG 3 cut(s) 935, 1027, 1030
BstKTI GATC 4 cut(s) 328, 436, 616, 888
BstMAI GTCTC 4 cut(s) 213, 535, 823, 1034
BstMBI GATC 4 cut(s) 325, 433, 613, 885
BstMWI GCNNNNNNNGC 1 cut(s) 668
BstNI CCWGG 1 cut(s) 984
BstSCI CCNGG 1 cut(s) 982
BstSFI CTRYAG 2 cut(s) 240, 474
BstV1I GCAGC 3 cut(s) 79, 349, 788
BstX2I RGATCY 2 cut(s) 325, 613
BstYI RGATCY 2 cut(s) 325, 613
BstZ17I GTATAC 1 cut(s) 523
Bsu36I CCTNAGG 1 cut(s) 373
BsuI GTATCC 2 cut(s) 151, 1040
BsuRI GGCC 1 cut(s) 764
BtgI CCRYGG 1 cut(s) 1035
BtsCI GGATG 3 cut(s) 935, 1027, 1030
BtsI GCAGTG 1 cut(s) 1000
BtsIMutI CAGTG 3 cut(s) 575, 662, 1000
Cac8I GCNNGC 3 cut(s) 315, 713, 754
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 959
Csp6I GTAC 2 cut(s) 987, 1009
CviAII CATG 2 cut(s) 734, 883
CviQI GTAC 2 cut(s) 987, 1009
DdeI CTNAG 4 cut(s) 271, 373, 578, 795
DpnI GATC 4 cut(s) 327, 435, 615, 887
DpnII GATC 4 cut(s) 325, 433, 613, 885
Eam1104I CTCTTC 3 cut(s) 256, 635, 791
EarI CTCTTC 3 cut(s) 256, 635, 791
Ecl136II GAGCTC 1 cut(s) 585
Eco24I GRGCYC 1 cut(s) 587
Eco32I GATATC 1 cut(s) 862
Eco47I GGWCC 1 cut(s) 959
Eco53kI GAGCTC 1 cut(s) 585
Eco57I CTGAAG 2 cut(s) 15, 306
Eco81I CCTNAGG 1 cut(s) 373
EcoICRI GAGCTC 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 982
EcoRV GATATC 1 cut(s) 862
EcoT38I GRGCYC 1 cut(s) 587
FaeI CATG 2 cut(s) 737, 886
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 2 cut(s) 64, 251
FatI CATG 2 cut(s) 733, 882
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 3 cut(s) 93, 338, 777
FokI GGATG 3 cut(s) 942, 1017, 1034
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 3 cut(s) 93, 338, 777
GluI GCNGC 3 cut(s) 93, 338, 777
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 764
HapII CCGG 1 cut(s) 314
Hin1II CATG 2 cut(s) 737, 886
HinfI GANTC 6 cut(s) 146, 264, 626, 675, 815, 977
HpaII CCGG 1 cut(s) 314
HphI GGTGA 1 cut(s) 1051
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 4 cut(s) 47, 274, 330, 433
Hpy188III TCNNGA 5 cut(s) 323, 344, 375, 384, 836
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 2 cut(s) 39, 240
HpyCH4III ACNGT 1 cut(s) 414
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 4 cut(s) 337, 554, 662, 993
HpyF10VI GCNNNNNNNGC 1 cut(s) 668
HpyF3I CTNAG 4 cut(s) 271, 373, 578, 795
HpySE526I ACGT 1 cut(s) 525
Hsp92II CATG 2 cut(s) 737, 886
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 4 cut(s) 325, 433, 613, 885
LmnI GCTCC 2 cut(s) 582, 668
Lsp1109I GCAGC 3 cut(s) 79, 349, 788
LweI GCATC 2 cut(s) 920, 1012
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 2 cut(s) 968, 995
MalI GATC 4 cut(s) 327, 435, 615, 887
MboI GATC 4 cut(s) 325, 433, 613, 885
MboII GAAGA 8 cut(s) 17, 273, 299, 313, 316, 439, 652, 778
MflI RGATCY 2 cut(s) 325, 613
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 7 cut(s) 21, 199, 290, 331, 407, 437, 691
MlyI GAGTC 3 cut(s) 273, 684, 971
MmeI TCCRAC 1 cut(s) 517
MroNI GCCGGC 1 cut(s) 313
MslI CAYNNNNRTG 3 cut(s) 185, 706, 1064
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 984
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 1 cut(s) 984
MwoI GCNNNNNNNGC 1 cut(s) 668
NaeI GCCGGC 1 cut(s) 315
NdeII GATC 4 cut(s) 325, 433, 613, 885
NgoMIV GCCGGC 1 cut(s) 313
NlaIII CATG 2 cut(s) 737, 886
NlaIV GGNNCC 2 cut(s) 327, 1055
NmeAIII GCCGAG 1 cut(s) 790
NmuCI GTSAC 1 cut(s) 995
OliI CACNNNNGTG 1 cut(s) 706
PcsI WCGNNNNNNNCGW 1 cut(s) 531
PctI GAATGC 1 cut(s) 240
PdiI GCCGGC 1 cut(s) 315
PfeI GAWTC 3 cut(s) 146, 626, 815
PflMI CCANNNNNTGG 2 cut(s) 212, 704
PkrI GCNGC 3 cut(s) 94, 339, 778
PleI GAGTC 3 cut(s) 272, 683, 971
PpsI GAGTC 3 cut(s) 272, 683, 971
Psp124BI GAGCTC 1 cut(s) 587
Psp6I CCWGG 1 cut(s) 982
PspGI CCWGG 1 cut(s) 982
PspN4I GGNNCC 2 cut(s) 327, 1055
PspPI GGNCC 1 cut(s) 959
PsuI RGATCY 2 cut(s) 325, 613
RsaI GTAC 2 cut(s) 988, 1010
RsaNI GTAC 2 cut(s) 987, 1009
RseI CAYNNNNRTG 3 cut(s) 185, 706, 1064
SacI GAGCTC 1 cut(s) 587
SatI GCNGC 3 cut(s) 93, 338, 777
Sau3AI GATC 4 cut(s) 325, 433, 613, 885
Sau96I GGNCC 1 cut(s) 959
SchI GAGTC 3 cut(s) 273, 684, 971
ScrFI CCNGG 1 cut(s) 984
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 2 cut(s) 920, 1012
SfcI CTRYAG 2 cut(s) 240, 474
SinI GGWCC 1 cut(s) 959
SmiMI CAYNNNNRTG 3 cut(s) 185, 706, 1064
Sse9I AATT 7 cut(s) 21, 199, 290, 331, 407, 437, 691
SsiI CCGC 1 cut(s) 128
SspI AATATT 1 cut(s) 153
SstI GAGCTC 1 cut(s) 587
StyD4I CCNGG 1 cut(s) 982
TaaI ACNGT 1 cut(s) 414
TaiI ACGT 1 cut(s) 528
TaqI TCGA 1 cut(s) 624
TasI AATT 7 cut(s) 21, 199, 290, 331, 407, 437, 691
TfiI GAWTC 3 cut(s) 146, 626, 815
TscAI CASTG 3 cut(s) 582, 669, 1000
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 3 cut(s) 92, 337, 776
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 2 cut(s) 27, 414
TspGWI ACGGA 2 cut(s) 523, 1052
TspRI CASTG 3 cut(s) 582, 669, 1000
Van91I CCANNNNNTGG 2 cut(s) 212, 704
VpaK11BI GGWCC 1 cut(s) 959
XapI RAATTY 2 cut(s) 21, 331
XmiI GTMKAC 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.