Rmu_sc0008564.1_g000006

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008564.1
OG0000393
Physical Location & Seq
Reverse (-)
19591 .. 21573
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008564.1_g000006.1.cds

Sequence Viewer

Length: 1011 bp
atgaagcagcagcaacttccaagaggcggcgagggctcagggtttgccggacggaggccggaggcatcccagaccgttctgggcaacaatcgaggtcggaggagatcgaggttgcatgttctgtgtagcaaccagacctgcaactgtaaggttctgggcaatgcagcaacctcgtcactccacccgactgcagaccggcttctcagacccctagcccccctccggcaagcccagctgcgccgtcgaaggttgttcgaggccggaggagcgacatccgcactttttctgggttgcggacatccgctctcgaacgcctcactctgcccagaaacttgtagttgtaggtcaggtcgctgcccagaagctgcaacctcgatctcctccgacctcgatcgctgcccagaactatctgggatgcctccggcctcagtcttgcaagccccgagcagccgtctccgcctgaaatgcagtagaaccgtcgacgtcagcactttagcgagcaatgaccttgcacttaattatttttctacaccactgaggagcgctcactatgatattccagcttatacagacttactgcttgaattagcttcaaacttctttcaggaactttatgcactgggagcaagagtgattggagtagcaagtatgccgccaattgggtgtgtgccagcacagagaacactcggtggaggcatagagagagcctgcgatgagactgagaaccaagcagcaatcctcttcaactcgaagctctccgcccttatagattccctcaataagagacttccagaagcacaactcatttacgttgacatatataaccccttgttgtccattatccaagaccctgctcaatatggaactgttgagttcgggtctctgtgtaacaaagacactccgggtacttgcaacgatgagtccaagtacatattttgggatggccttcatcccacagaaacagcttacaggatcctcacctctgacattgtcttaagaattagcagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

336

Amino Acids

36.42

Weight (kDa)

8.53

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 486
Acc36I ACCTGC 1 cut(s) 146
AccBSI CCGCTC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 480
AciI CCGC 7 cut(s) 27, 276, 294, 302, 457, 653, 759
AclWI GGATC 2 cut(s) 967, 980
AcyI GRCGYC 1 cut(s) 483
AdeI CACNNNGTG 1 cut(s) 689
AfaI GTAC 2 cut(s) 907, 929
AfeI AGCGCT 1 cut(s) 544
AfiI CCNNNNNNNGG 4 cut(s) 26, 54, 222, 659
AflII CTTAAG 1 cut(s) 994
AgsI TTSAA 3 cut(s) 584, 594, 745
AluBI AGCT 7 cut(s) 235, 365, 563, 590, 754, 965, 1008
AluI AGCT 7 cut(s) 235, 365, 563, 590, 754, 965, 1008
Alw26I GTCTC 4 cut(s) 458, 710, 778, 885
AlwI GGATC 2 cut(s) 967, 980
AlwNI CAGNNNCTG 1 cut(s) 365
Ama87I CYCGRG 1 cut(s) 442
Aor51HI AGCGCT 1 cut(s) 544
AoxI GGCC 4 cut(s) 56, 258, 423, 943
AspLEI GCGC 2 cut(s) 240, 545
AsuC2I CCSGG 1 cut(s) 903
AsuHPI GGTGA 1 cut(s) 970
AvaI CYCGRG 1 cut(s) 442
BamHI GGATCC 1 cut(s) 972
BanII GRGCYC 1 cut(s) 38
BbvI GCAGC 9 cut(s) 19, 22, 176, 222, 341, 352, 383, 459, 743
BccI CCATC 1 cut(s) 935
BceAI ACGGC 2 cut(s) 225, 435
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BcnI CCSGG 1 cut(s) 903
BcoDI GTCTC 4 cut(s) 458, 710, 778, 885
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 1 cut(s) 546
BfrI CTTAAG 1 cut(s) 994
BfuAI ACCTGC 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 903
BmeT110I CYCGRG 1 cut(s) 442
BmiI GGNNCC 1 cut(s) 974
BmrFI CCNGG 1 cut(s) 903
BmrI ACTGGG 1 cut(s) 629
BmsI GCATC 2 cut(s) 74, 405
BmuI ACTGGG 1 cut(s) 629
BplI GAGNNNNNCTC 2 cut(s) 529, 561
Bpu10I CCTNAGC 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 903
BsaHI GRCGYC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 885
BsaXI ACNNNNNCTCC 2 cut(s) 615, 645
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 54, 222, 659
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 624
Bse3DI GCAATG 2 cut(s) 166, 508
BseGI GGATG 6 cut(s) 65, 272, 298, 420, 946, 949
BseLI CCNNNNNNNGG 4 cut(s) 26, 54, 222, 659
BseMI GCAATG 2 cut(s) 166, 508
BseMII CTCAG 5 cut(s) 51, 217, 441, 527, 711
BseNI ACTGG 1 cut(s) 624
BseRI GAGGAG 4 cut(s) 115, 279, 370, 553
BseXI GCAGC 9 cut(s) 19, 22, 176, 222, 341, 352, 383, 459, 743
BseYI CCCAGC 1 cut(s) 231
Bsh1285I CGRYCG 1 cut(s) 394
BshFI GGCC 4 cut(s) 58, 260, 425, 945
BsiEI CGRYCG 1 cut(s) 394
BsiHKCI CYCGRG 1 cut(s) 442
BsiSI CCGG 7 cut(s) 48, 59, 196, 223, 261, 422, 902
BslI CCNNNNNNNGG 4 cut(s) 26, 54, 222, 659
BsmAI GTCTC 4 cut(s) 458, 710, 778, 885
BsmBI CGTCTC 1 cut(s) 458
BsnI GGCC 4 cut(s) 58, 260, 425, 945
Bso31I GGTCTC 1 cut(s) 885
BsoBI CYCGRG 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 4 cut(s) 104, 375, 391, 972
BspACI CCGC 7 cut(s) 27, 276, 294, 302, 457, 653, 759
BspANI GGCC 4 cut(s) 58, 260, 425, 945
BspCNI CTCAG 5 cut(s) 50, 216, 440, 528, 712
BspLI GGNNCC 1 cut(s) 974
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 146
BspPI GGATC 2 cut(s) 967, 980
BspTI CTTAAG 1 cut(s) 994
BspTNI GGTCTC 1 cut(s) 885
BsrBI CCGCTC 1 cut(s) 304
BsrDI GCAATG 2 cut(s) 166, 508
BsrFI RCCGGY 1 cut(s) 195
BsrI ACTGG 1 cut(s) 624
BssAI RCCGGY 1 cut(s) 195
BssMI GATC 4 cut(s) 104, 375, 391, 972
BssNI GRCGYC 1 cut(s) 483
Bst4CI ACNGT 4 cut(s) 76, 146, 478, 868
Bst6I CTCTTC 1 cut(s) 746
BstACI GRCGYC 1 cut(s) 483
BstAFI CTTAAG 1 cut(s) 994
BstC8I GCNNGC 5 cut(s) 228, 438, 499, 672, 709
BstDEI CTNAG 5 cut(s) 37, 203, 427, 536, 720
BstF5I GGATG 6 cut(s) 65, 272, 298, 420, 946, 949
BstH2I RGCGCY 1 cut(s) 546
BstHHI GCGC 2 cut(s) 240, 545
BstKTI GATC 4 cut(s) 107, 378, 394, 975
BstMAI GTCTC 4 cut(s) 458, 710, 778, 885
BstMBI GATC 4 cut(s) 104, 375, 391, 972
BstMCI CGRYCG 1 cut(s) 394
BstMWI GCNNNNNNNGC 7 cut(s) 33, 232, 266, 275, 456, 465, 623
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 901
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 9 cut(s) 19, 22, 176, 222, 341, 352, 383, 459, 743
BstX2I RGATCY 1 cut(s) 972
BstYI RGATCY 1 cut(s) 972
BsuRI GGCC 4 cut(s) 58, 260, 425, 945
BtgZI GCGATG 1 cut(s) 726
BtsCI GGATG 6 cut(s) 65, 272, 298, 420, 946, 949
BtsIMutI CAGTG 2 cut(s) 533, 617
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 5 cut(s) 228, 438, 499, 672, 709
CaiI CAGNNNCTG 1 cut(s) 365
CfoI GCGC 2 cut(s) 240, 545
Cfr10I RCCGGY 1 cut(s) 195
Csp6I GTAC 2 cut(s) 906, 928
CviAII CATG 1 cut(s) 116
CviQI GTAC 2 cut(s) 906, 928
DdeI CTNAG 5 cut(s) 37, 203, 427, 536, 720
DpnI GATC 4 cut(s) 106, 377, 393, 974
DpnII GATC 4 cut(s) 104, 375, 391, 972
DraIII CACNNNGTG 1 cut(s) 689
Eam1104I CTCTTC 1 cut(s) 746
EarI CTCTTC 1 cut(s) 746
EciI GGCGGA 2 cut(s) 446, 748
Eco24I GRGCYC 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 885
Eco47III AGCGCT 1 cut(s) 544
Eco88I CYCGRG 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 1 cut(s) 119
FatI CATG 1 cut(s) 115
FblI GTMKAC 1 cut(s) 480
FokI GGATG 6 cut(s) 52, 259, 285, 427, 936, 953
FriOI GRGCYC 1 cut(s) 38
FspBI CTAG 1 cut(s) 212
GlaI GCGC 2 cut(s) 239, 544
GsaI CCCAGC 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 546
HaeIII GGCC 4 cut(s) 58, 260, 425, 945
HapII CCGG 7 cut(s) 48, 59, 196, 223, 261, 422, 902
HhaI GCGC 2 cut(s) 240, 545
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 1 cut(s) 119
Hin6I GCGC 2 cut(s) 238, 543
HinP1I GCGC 2 cut(s) 238, 543
HincII GTYRAC 2 cut(s) 481, 814
HindII GTYRAC 2 cut(s) 481, 814
HinfI GANTC 2 cut(s) 770, 920
HpaII CCGG 7 cut(s) 48, 59, 196, 223, 261, 422, 902
HphI GGTGA 1 cut(s) 970
Hpy166II GTNNAC 2 cut(s) 481, 814
Hpy188I TCNGA 4 cut(s) 99, 206, 385, 985
Hpy188III TCNNGA 3 cut(s) 307, 605, 791
Hpy8I GTNNAC 2 cut(s) 481, 814
Hpy99I CGWCG 3 cut(s) 246, 482, 485
HpyAV CCTTC 2 cut(s) 240, 956
HpyCH4III ACNGT 4 cut(s) 76, 146, 478, 868
HpyCH4IV ACGT 2 cut(s) 483, 810
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 232, 266, 275, 456, 465, 623
HpyF3I CTNAG 5 cut(s) 37, 203, 427, 536, 720
HpySE526I ACGT 2 cut(s) 483, 810
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 1 cut(s) 119
HspAI GCGC 2 cut(s) 238, 543
Kzo9I GATC 4 cut(s) 104, 375, 391, 972
LmnI GCTCC 3 cut(s) 266, 540, 623
Lsp1109I GCAGC 9 cut(s) 19, 22, 176, 222, 341, 352, 383, 459, 743
LweI GCATC 2 cut(s) 74, 405
MaeI CTAG 1 cut(s) 212
MaeII ACGT 2 cut(s) 483, 810
MaeIII GTNAC 2 cut(s) 174, 887
MalI GATC 4 cut(s) 106, 377, 393, 974
MbiI CCGCTC 1 cut(s) 304
MboI GATC 4 cut(s) 104, 375, 391, 972
MboII GAAGA 1 cut(s) 733
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 1 cut(s) 972
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 4 cut(s) 517, 584, 657, 999
MlyI GAGTC 1 cut(s) 929
MmeI TCCRAC 2 cut(s) 77, 408
MseI TTAA 2 cut(s) 516, 995
MspA1I CMGCKG 1 cut(s) 235
MspCI CTTAAG 1 cut(s) 994
MspI CCGG 7 cut(s) 48, 59, 196, 223, 261, 422, 902
MspR9I CCNGG 1 cut(s) 903
MunI CAATTG 1 cut(s) 657
MwoI GCNNNNNNNGC 7 cut(s) 33, 232, 266, 275, 456, 465, 623
NciI CCSGG 1 cut(s) 903
NdeII GATC 4 cut(s) 104, 375, 391, 972
NlaIII CATG 1 cut(s) 119
NlaIV GGNNCC 1 cut(s) 974
NmuCI GTSAC 1 cut(s) 174
NspI RCATGY 1 cut(s) 119
PfeI GAWTC 1 cut(s) 770
PflFI GACNNNGTC 1 cut(s) 989
Ple19I CGATCG 1 cut(s) 394
PleI GAGTC 1 cut(s) 928
PpsI GAGTC 1 cut(s) 928
PspFI CCCAGC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 974
PstI CTGCAG 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 365
PsuI RGATCY 1 cut(s) 972
PsyI GACNNNGTC 1 cut(s) 989
PvuI CGATCG 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 2 cut(s) 907, 929
RsaNI GTAC 2 cut(s) 906, 928
SalI GTCGAC 1 cut(s) 479
SaqAI TTAA 2 cut(s) 516, 995
Sau3AI GATC 4 cut(s) 104, 375, 391, 972
SchI GAGTC 1 cut(s) 929
ScrFI CCNGG 1 cut(s) 903
SduI GDGCHC 1 cut(s) 38
SfaNI GCATC 2 cut(s) 74, 405
SfcI CTRYAG 1 cut(s) 189
SgrDI CGTCGACG 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 994
SmoI CTYRAG 1 cut(s) 994
Sse9I AATT 4 cut(s) 517, 584, 657, 999
SsiI CCGC 7 cut(s) 27, 276, 294, 302, 457, 653, 759
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 901
TaaI ACNGT 4 cut(s) 76, 146, 478, 868
TaiI ACGT 2 cut(s) 486, 813
TaqI TCGA 9 cut(s) 91, 107, 244, 255, 308, 374, 390, 480, 749
TasI AATT 4 cut(s) 517, 584, 657, 999
TatI WGTACW 1 cut(s) 927
TauI GCSGC 2 cut(s) 30, 655
TfiI GAWTC 1 cut(s) 770
Tru1I TTAA 2 cut(s) 516, 995
Tru9I TTAA 2 cut(s) 516, 995
TscAI CASTG 2 cut(s) 540, 624
TseFI GTSAC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 17, 938
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 2 cut(s) 540, 624
Tth111I GACNNNGTC 1 cut(s) 989
Vha464I CTTAAG 1 cut(s) 994
XceI RCATGY 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 480
XspI CTAG 1 cut(s) 212
ZraI GACGTC 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.