Rh2BG126900

GDSL esterase lipase EXL3-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
10844118 .. 10858864
14747 bp
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UTR
Exon/CDS
Intron
Rh2BG126900.1

Sequence Viewer

Length: 330 bp
ATGAAAGAACAGCCACTCTACTACTTCCTGCTTGAATTAGCTGCAAACTTCTTTCAGGAACTTTATGCACTGGGAGCAAGAGTGATTGGAGTAGCAAGTATGCCACCAATTGGGTGTGTGCCAGCACATAGAACACTCAGTGGAGGCATAGAGAGAGTCTGCGATGAGATTGAGAACCAAGCAGCAATCCTCTTCAACTCGAAGCTCTCCGCCCTTATAGACTCCCTCAATAAGAGACTTCCAGAAGCACAACTCATTTACGTTGACATATATAACCCTTTGTTGTCCATTATCCAAGACCCTGCTCAATATGCCATGAAGGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.09

Weight (kDa)

4.97

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 17 - 96 4.1e-09 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AciI CCGC 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 2 cut(s) 35, 196
AluBI AGCT 2 cut(s) 41, 205
AluI AGCT 2 cut(s) 41, 205
Alw26I GTCTC 1 cut(s) 229
ApeKI GCWGC 2 cut(s) 41, 182
BbvI GCAGC 2 cut(s) 28, 194
BcoDI GTCTC 1 cut(s) 229
BglI GCCNNNNNGGC 1 cut(s) 320
BisI GCNGC 2 cut(s) 42, 183
BlsI GCNGC 2 cut(s) 43, 184
BmrI ACTGGG 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 28, 194
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 229
BspACI CCGC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 150
BsrI ACTGG 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 137
BstMAI GTCTC 1 cut(s) 229
BstMWI GCNNNNNNNGC 3 cut(s) 74, 311, 320
BstV1I GCAGC 2 cut(s) 28, 194
BtgZI GCGATG 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 68, 145
Cac8I GCNNGC 1 cut(s) 123
CviAII CATG 1 cut(s) 316
CviJI RGCY 4 cut(s) 13, 41, 205, 323
CviKI_1 RGCY 4 cut(s) 13, 41, 205, 323
DdeI CTNAG 1 cut(s) 137
DraIII CACNNNGTG 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 199
FaeI CATG 1 cut(s) 319
FatI CATG 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 42, 183
Fsp4HI GCNGC 2 cut(s) 42, 183
GluI GCNGC 2 cut(s) 42, 183
Hin1II CATG 1 cut(s) 319
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 2 cut(s) 156, 221
Hpy166II GTNNAC 1 cut(s) 265
Hpy188III TCNNGA 3 cut(s) 56, 242, 327
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 2 cut(s) 44, 68
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 311, 320
HpyF3I CTNAG 1 cut(s) 137
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 1 cut(s) 319
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 6 cut(s) 41, 41, 56, 135, 255, 315
Lsp1109I GCAGC 2 cut(s) 28, 194
MaeII ACGT 1 cut(s) 261
MboII GAAGA 1 cut(s) 184
MfeI CAATTG 1 cut(s) 108
MluCI AATT 2 cut(s) 35, 108
MlyI GAGTC 2 cut(s) 165, 215
MnlI CCTC 3 cut(s) 137, 200, 236
MunI CAATTG 1 cut(s) 108
MwoI GCNNNNNNNGC 3 cut(s) 74, 311, 320
NlaIII CATG 1 cut(s) 319
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 2 cut(s) 43, 184
PleI GAGTC 2 cut(s) 164, 215
PpsI GAGTC 2 cut(s) 164, 215
SatI GCNGC 2 cut(s) 42, 183
SchI GAGTC 2 cut(s) 165, 215
SetI ASST 3 cut(s) 43, 207, 264
Sse9I AATT 2 cut(s) 35, 108
SsiI CCGC 1 cut(s) 210
TaiI ACGT 1 cut(s) 264
TaqI TCGA 1 cut(s) 200
TasI AATT 2 cut(s) 35, 108
TscAI CASTG 2 cut(s) 75, 145
TseI GCWGC 2 cut(s) 41, 182
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 75, 145
Van91I CCANNNNNTGG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.