Rmu_co8476509.1_g000001

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8476509.1
OG0000393
Physical Location & Seq
Forward (+)
1226 .. 2128
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8476509.1_g000001.1.cds

Sequence Viewer

Length: 633 bp
atgaattttctcacccgaaaacttcctctcttttttccagtcatcattgttacattcatcatctaccatagtgctgctgctttaacactaccaaaaaatgtaacgtttccggcagtgattatttggggagattcaatagtggatcccggaaacaacaacctagtcaacactatagtaaaatgcaactttgaaccttatgggagggactacgccggaggagtgcctaccggaaggtttagcaacggaagagtcccctcagacttgatagctgaagaacttggaatcaagaagattttaccggcttatctggatccgaacctgcagcttgaagacttacttacgggtgtaagttttgcctctggtggttctggttatgatcccctcactcccaaaatagtgaatgtgttatcattatcagatcaattagagttgttcaaagagtacaaaagcaaaatagatgcagcagttggggtggaaagaagagaaattatagtgtcaaaaggagtacacgttgtgtgcataggaagtgatgacattgcaaacacttacctctctacaccattcaggagccctcactatgatattccagcctatacagatctcatggccaattcagcttcaaagttctttcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

211

Amino Acids

23.12

Weight (kDa)

5.59

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 327
AclI AACGTT 1 cut(s) 104
AclWI GGATC 5 cut(s) 137, 150, 305, 318, 371
AcoI YGGCCR 1 cut(s) 606
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 291
AdeI CACNNNGTG 1 cut(s) 514
AfaI GTAC 2 cut(s) 443, 507
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 5 cut(s) 135, 191, 329, 436, 621
AluBI AGCT 3 cut(s) 269, 325, 617
AluI AGCT 3 cut(s) 269, 325, 617
AlwI GGATC 5 cut(s) 137, 150, 305, 318, 371
AoxI GGCC 1 cut(s) 606
ApeKI GCWGC 4 cut(s) 74, 77, 322, 461
ApoI RAATTY 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 4
BalI TGGCCA 1 cut(s) 608
BamHI GGATCC 2 cut(s) 142, 310
BanII GRGCYC 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 336
BbvI GCAGC 4 cut(s) 61, 64, 334, 473
BcnI CCSGG 1 cut(s) 147
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 2 cut(s) 171, 320
BfuAI ACCTGC 1 cut(s) 327
BglII AGATCT 1 cut(s) 598
BisI GCNGC 4 cut(s) 75, 78, 323, 462
BlsI GCNGC 4 cut(s) 76, 79, 324, 463
Bme1390I CCNGG 1 cut(s) 147
BmiI GGNNCC 3 cut(s) 144, 312, 569
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 495, 525
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 534
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 4 cut(s) 61, 64, 334, 473
BshFI GGCC 1 cut(s) 608
BsiSI CCGG 5 cut(s) 110, 147, 213, 228, 299
BslFI GGGAC 2 cut(s) 218, 236
BsmFI GGGAC 2 cut(s) 218, 236
BsnI GGCC 1 cut(s) 608
Bsp1286I GDGCHC 1 cut(s) 572
Bsp143I GATC 5 cut(s) 142, 310, 376, 418, 598
BspANI GGCC 1 cut(s) 608
BspCNI CTCAG 1 cut(s) 269
BspLI GGNNCC 3 cut(s) 144, 312, 569
BspMAI CTGCAG 1 cut(s) 324
BspMI ACCTGC 1 cut(s) 327
BspPI GGATC 5 cut(s) 137, 150, 305, 318, 371
BsrDI GCAATG 1 cut(s) 534
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 298
BssMI GATC 5 cut(s) 142, 310, 376, 418, 598
Bst6I CTCTTC 2 cut(s) 241, 475
BstDEI CTNAG 1 cut(s) 256
BstKTI GATC 5 cut(s) 145, 313, 379, 421, 601
BstMBI GATC 5 cut(s) 142, 310, 376, 418, 598
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 2 cut(s) 171, 320
BstV1I GCAGC 4 cut(s) 61, 64, 334, 473
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 3 cut(s) 142, 310, 598
BstYI RGATCY 3 cut(s) 142, 310, 598
BsuRI GGCC 1 cut(s) 608
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
BveI ACCTGC 1 cut(s) 327
Cfr10I RCCGGY 1 cut(s) 298
Csp6I GTAC 2 cut(s) 442, 506
CviAII CATG 1 cut(s) 604
CviJI RGCY 7 cut(s) 269, 302, 325, 570, 590, 608, 617
CviKI_1 RGCY 7 cut(s) 269, 302, 325, 570, 590, 608, 617
CviQI GTAC 2 cut(s) 442, 506
DdeI CTNAG 1 cut(s) 256
DpnI GATC 5 cut(s) 144, 312, 378, 420, 600
DpnII GATC 5 cut(s) 142, 310, 376, 418, 598
DraIII CACNNNGTG 1 cut(s) 514
EaeI YGGCCR 1 cut(s) 606
Eam1104I CTCTTC 2 cut(s) 241, 475
EarI CTCTTC 2 cut(s) 241, 475
Eco24I GRGCYC 1 cut(s) 572
Eco57I CTGAAG 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 572
FaeI CATG 1 cut(s) 607
FaiI YATR 9 cut(s) 69, 173, 198, 375, 491, 521, 579, 594, 605
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 2 cut(s) 218, 236
FatI CATG 1 cut(s) 603
Fnu4HI GCNGC 4 cut(s) 75, 78, 323, 462
FriOI GRGCYC 1 cut(s) 572
Fsp4HI GCNGC 4 cut(s) 75, 78, 323, 462
FspBI CTAG 1 cut(s) 161
GluI GCNGC 4 cut(s) 75, 78, 323, 462
HaeIII GGCC 1 cut(s) 608
HapII CCGG 5 cut(s) 110, 147, 213, 228, 299
Hin1II CATG 1 cut(s) 607
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 3 cut(s) 131, 249, 282
HpaII CCGG 5 cut(s) 110, 147, 213, 228, 299
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 2 cut(s) 166, 508
Hpy188I TCNGA 3 cut(s) 259, 315, 418
Hpy188III TCNNGA 3 cut(s) 286, 308, 565
Hpy8I GTNNAC 2 cut(s) 166, 508
HpyAV CCTTC 1 cut(s) 225
HpyCH4IV ACGT 2 cut(s) 104, 510
HpyCH4V TGCA 5 cut(s) 183, 322, 461, 519, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 1 cut(s) 256
HpySE526I ACGT 2 cut(s) 104, 510
Hsp92II CATG 1 cut(s) 607
Kzo9I GATC 5 cut(s) 142, 310, 376, 418, 598
LmnI GCTCC 1 cut(s) 567
Lsp1109I GCAGC 4 cut(s) 61, 64, 334, 473
LweI GCATC 1 cut(s) 448
MaeI CTAG 1 cut(s) 161
MaeII ACGT 2 cut(s) 104, 510
MaeIII GTNAC 2 cut(s) 49, 100
MalI GATC 5 cut(s) 144, 312, 378, 420, 600
MboI GATC 5 cut(s) 142, 310, 376, 418, 598
MboII GAAGA 5 cut(s) 258, 284, 301, 341, 492
MflI RGATCY 3 cut(s) 142, 310, 598
MhlI GDGCHC 1 cut(s) 572
MlsI TGGCCA 1 cut(s) 608
MluCI AATT 4 cut(s) 4, 422, 486, 610
MluNI TGGCCA 1 cut(s) 608
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 8 cut(s) 36, 195, 209, 265, 367, 392, 560, 582
Mox20I TGGCCA 1 cut(s) 608
MscI TGGCCA 1 cut(s) 608
MseI TTAA 1 cut(s) 83
Msp20I TGGCCA 1 cut(s) 608
MspI CCGG 5 cut(s) 110, 147, 213, 228, 299
MspR9I CCNGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 614
NciI CCSGG 1 cut(s) 147
NdeII GATC 5 cut(s) 142, 310, 376, 418, 598
NlaIII CATG 1 cut(s) 607
NlaIV GGNNCC 3 cut(s) 144, 312, 569
PfeI GAWTC 2 cut(s) 131, 282
PfoI TCCNGGA 1 cut(s) 145
PkrI GCNGC 4 cut(s) 76, 79, 324, 463
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Psp1406I AACGTT 1 cut(s) 104
PspN4I GGNNCC 3 cut(s) 144, 312, 569
PstI CTGCAG 1 cut(s) 324
PsuI RGATCY 3 cut(s) 142, 310, 598
RsaI GTAC 2 cut(s) 443, 507
RsaNI GTAC 2 cut(s) 442, 506
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 4 cut(s) 75, 78, 323, 462
Sau3AI GATC 5 cut(s) 142, 310, 376, 418, 598
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 572
SfaNI GCATC 1 cut(s) 448
SfcI CTRYAG 2 cut(s) 171, 320
Sse9I AATT 4 cut(s) 4, 422, 486, 610
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 145
TaiI ACGT 2 cut(s) 107, 513
TasI AATT 4 cut(s) 4, 422, 486, 610
TatI WGTACW 2 cut(s) 441, 505
TfiI GAWTC 2 cut(s) 131, 282
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 1 cut(s) 120
TseI GCWGC 4 cut(s) 74, 77, 322, 461
TspDTI ATGAA 2 cut(s) 17, 46
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 1 cut(s) 120
XapI RAATTY 1 cut(s) 4
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.