RLG00000016830

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000393
Physical Location & Seq
Reverse (-)
10442023 .. 10444133
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016830

Sequence Viewer

Length: 1095 bp
ATGGCTTTTCTCTCCCCAAAAATTCTTCCTTCATCTTCATCTTTCAGAGTTTCTGTGATCATCTTATTTATATTGCTCTCCCATAATGTTGCTGCTATAACACTATCCAAAAATGGAACAGCTCCAGCGGTGTTTGCTTTTGGAGATTCAATATTGGATACTGGCAATAACGATTACATCGTTTCTATGAGCAAAAGCAATTTCCCACCTTATGGGAGAGACTTTATGGGAGGAATGCCTACAGGAAGGTTTAGCAATGGAAGAGTCCCCTCAGACTTCATTGCTGAAGAATTAGGAGTGAAGAAGATGTTGCCGGCTTATCTGGATCCAAATTTGCAGCTTCAAGACCTACTTACTGGTGTATGTTTTGCCTCAGGAGGTTCAGGATATGACCCTCTCACTCCCAAATTACAGTCTGTCTTGTCATTATCAGATCAATTAGACTTGTTCAAAGAATACAAAAGCAAGATAAACACAGCAATTGGGAATGAAAGAACAGCCGCTCTGCTGTCAGAAAGCTTATTCATCCTTTCAATAGGAAGCAATGACCTTGCAATTAATTATTTTCCTACACCACTGAGGAGCGCTCACTATGATATTCCAGCTTATACAGATCTCCTGCTTGAATTAGCTTTAAATTTCCTCCAGGAACTTTATGCACTGGGAGCAAGAGTGATTGGAGTAATAAGTATGCCGCCAATTGGGTGTGTACCAGCACAGAGAACACTCGATGGAGGCATAGACAGAGCCTGCTATGAGACTGAGAACCAAGCAGCAATCCTCTTCAACTCGAAGCTCTCCCCCCTTATAGACTCCCTCAATAAGAGACTTCCAGAAGCACAACTCATTTACATTGATATATATAGCCCTTTGTTGTCCATTATCCAAGACCCTGCTCAATATGGATTTGAAGTGGTGGATAAAGGATGCTGTGGAACAGGAACTGTTGAGTCCGGGCCTCTGTGTAACAAAGACACTCCAGTTATTTGCAGCGATGCATCCAAGTACATATTCTGGGATAGCTTTCATCCCACAGAAACAGCTTACCGGATCCTCACCTCTGCACTATTAAAGCAGATTGACAAATTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

365

Amino Acids

39.66

Weight (kDa)

4.9

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 44 - 355 7.2e-37 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 503
AciI CCGC 3 cut(s) 128, 501, 695
AclWI GGATC 4 cut(s) 320, 333, 1045, 1058
AcsI RAATTY 4 cut(s) 21, 331, 637, 1085
AcuI CTGAAG 1 cut(s) 306
AfaI GTAC 2 cut(s) 711, 1007
AfeI AGCGCT 1 cut(s) 586
AfiI CCNNNNNNNGG 2 cut(s) 212, 701
AgsI TTSAA 7 cut(s) 150, 344, 451, 534, 626, 787, 911
AjnI CCWGG 1 cut(s) 645
AjuI GAANNNNNNNTTGG 2 cut(s) 995, 1027
AluBI AGCT 8 cut(s) 122, 340, 519, 605, 632, 796, 1023, 1043
AluI AGCT 8 cut(s) 122, 340, 519, 605, 632, 796, 1023, 1043
Alw26I GTCTC 3 cut(s) 213, 752, 820
AlwI GGATC 4 cut(s) 320, 333, 1045, 1058
AlwNI CAGNNNCTG 2 cut(s) 750, 944
Aor51HI AGCGCT 1 cut(s) 586
AoxI GGCC 1 cut(s) 956
ApeKI GCWGC 4 cut(s) 92, 337, 773, 990
ApoI RAATTY 4 cut(s) 21, 331, 637, 1085
AseI ATTAAT 1 cut(s) 558
AspLEI GCGC 1 cut(s) 587
AspS9I GGNCC 1 cut(s) 956
AsuC2I CCSGG 1 cut(s) 955
AsuHPI GGTGA 1 cut(s) 1048
AxyI CCTNAGG 1 cut(s) 373
BamHI GGATCC 2 cut(s) 325, 1050
BbvI GCAGC 4 cut(s) 79, 349, 785, 1002
BccI CCATC 1 cut(s) 725
BciT130I CCWGG 1 cut(s) 647
BciVI GTATCC 1 cut(s) 151
BclI TGATCA 1 cut(s) 57
BcnI CCSGG 1 cut(s) 955
BcoDI GTCTC 3 cut(s) 213, 752, 820
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 588
BfuI GTATCC 1 cut(s) 151
BglII AGATCT 1 cut(s) 613
BisI GCNGC 6 cut(s) 93, 338, 501, 695, 774, 991
BlsI GCNGC 6 cut(s) 94, 339, 502, 696, 775, 992
Bme1390I CCNGG 2 cut(s) 647, 955
BmgT120I GGNCC 1 cut(s) 956
BmiI GGNNCC 2 cut(s) 327, 1052
BmrFI CCNGG 2 cut(s) 647, 955
BmrI ACTGGG 1 cut(s) 671
BmsI GCATC 3 cut(s) 917, 985, 1007
BmuI ACTGGG 1 cut(s) 671
BplI GAGNNNNNCTC 2 cut(s) 571, 603
BpmI CTGGAG 3 cut(s) 108, 629, 963
BpuMI CCSGG 1 cut(s) 955
BsaWI WCCGGW 1 cut(s) 1047
BsaXI ACNNNNNCTCC 2 cut(s) 657, 687
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 701
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 4 cut(s) 166, 361, 666, 980
Bse21I CCTNAGG 1 cut(s) 373
Bse3DI GCAATG 3 cut(s) 262, 279, 550
BseBI CCWGG 1 cut(s) 647
BseGI GGATG 4 cut(s) 525, 932, 998, 1027
BseLI CCNNNNNNNGG 2 cut(s) 212, 701
BseMI GCAATG 3 cut(s) 262, 279, 550
BseMII CTCAG 4 cut(s) 285, 387, 569, 753
BseNI ACTGG 4 cut(s) 166, 361, 666, 980
BseRI GAGGAG 1 cut(s) 595
BseXI GCAGC 4 cut(s) 79, 349, 785, 1002
BsgI GTGCAG 1 cut(s) 1047
BshFI GGCC 1 cut(s) 958
BsiSI CCGG 3 cut(s) 314, 954, 1048
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 2 cut(s) 212, 701
BsmAI GTCTC 3 cut(s) 213, 752, 820
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 1 cut(s) 958
Bsp143I GATC 5 cut(s) 57, 325, 433, 613, 1050
BspACI CCGC 3 cut(s) 128, 501, 695
BspANI GGCC 1 cut(s) 958
BspCNI CTCAG 4 cut(s) 284, 386, 570, 754
BspLI GGNNCC 2 cut(s) 327, 1052
BspPI GGATC 4 cut(s) 320, 333, 1045, 1058
BsrBI CCGCTC 1 cut(s) 503
BsrDI GCAATG 3 cut(s) 262, 279, 550
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 4 cut(s) 166, 361, 666, 980
BssAI RCCGGY 1 cut(s) 313
BssMI GATC 5 cut(s) 57, 325, 433, 613, 1050
Bst2UI CCWGG 1 cut(s) 647
Bst4CI ACNGT 2 cut(s) 414, 946
Bst6I CTCTTC 2 cut(s) 256, 788
BstC8I GCNNGC 2 cut(s) 315, 751
BstDEI CTNAG 4 cut(s) 271, 373, 578, 762
BstF5I GGATG 4 cut(s) 525, 932, 998, 1027
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 5 cut(s) 60, 328, 436, 616, 1053
BstMAI GTCTC 3 cut(s) 213, 752, 820
BstMBI GATC 5 cut(s) 57, 325, 433, 613, 1050
BstMWI GCNNNNNNNGC 2 cut(s) 134, 665
BstNI CCWGG 1 cut(s) 647
BstSCI CCNGG 2 cut(s) 645, 953
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 4 cut(s) 79, 349, 785, 1002
BstX2I RGATCY 3 cut(s) 325, 613, 1050
BstYI RGATCY 3 cut(s) 325, 613, 1050
Bsu36I CCTNAGG 1 cut(s) 373
BsuI GTATCC 1 cut(s) 151
BsuRI GGCC 1 cut(s) 958
BtgZI GCGATG 1 cut(s) 1008
BtsCI GGATG 4 cut(s) 525, 932, 998, 1027
BtsIMutI CAGTG 2 cut(s) 575, 659
Cac8I GCNNGC 2 cut(s) 315, 751
CaiI CAGNNNCTG 2 cut(s) 750, 944
CfoI GCGC 1 cut(s) 587
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 956
Csp6I GTAC 2 cut(s) 710, 1006
CviQI GTAC 2 cut(s) 710, 1006
DdeI CTNAG 4 cut(s) 271, 373, 578, 762
DpnI GATC 5 cut(s) 59, 327, 435, 615, 1052
DpnII GATC 5 cut(s) 57, 325, 433, 613, 1050
DraI TTTAAA 1 cut(s) 636
Eam1104I CTCTTC 2 cut(s) 256, 788
EarI CTCTTC 2 cut(s) 256, 788
Eco47III AGCGCT 1 cut(s) 586
Eco57I CTGAAG 1 cut(s) 306
Eco81I CCTNAGG 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 645
EcoT22I ATGCAT 1 cut(s) 1000
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 1 cut(s) 251
FbaI TGATCA 1 cut(s) 57
Fnu4HI GCNGC 6 cut(s) 93, 338, 501, 695, 774, 991
FokI GGATG 4 cut(s) 512, 939, 985, 1014
Fsp4HI GCNGC 6 cut(s) 93, 338, 501, 695, 774, 991
GlaI GCGC 1 cut(s) 586
GluI GCNGC 6 cut(s) 93, 338, 501, 695, 774, 991
GsuI CTGGAG 3 cut(s) 108, 629, 963
HaeII RGCGCY 1 cut(s) 588
HaeIII GGCC 1 cut(s) 958
HapII CCGG 3 cut(s) 314, 954, 1048
HhaI GCGC 1 cut(s) 587
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 4 cut(s) 146, 264, 812, 950
HpaII CCGG 3 cut(s) 314, 954, 1048
HphI GGTGA 1 cut(s) 1048
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 5 cut(s) 47, 274, 433, 514, 1094
Hpy188III TCNNGA 5 cut(s) 323, 344, 375, 384, 833
Hpy8I GTNNAC 1 cut(s) 710
HpyAV CCTTC 2 cut(s) 39, 240
HpyCH4III ACNGT 2 cut(s) 414, 946
HpyCH4V TGCA 6 cut(s) 337, 554, 659, 990, 998, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 665
HpyF3I CTNAG 4 cut(s) 271, 373, 578, 762
HspAI GCGC 1 cut(s) 585
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Ksp22I TGATCA 1 cut(s) 57
Kzo9I GATC 5 cut(s) 57, 325, 433, 613, 1050
LmnI GCTCC 3 cut(s) 127, 582, 665
Lsp1109I GCAGC 4 cut(s) 79, 349, 785, 1002
LweI GCATC 3 cut(s) 917, 985, 1007
MaeIII GTNAC 1 cut(s) 965
MalI GATC 5 cut(s) 59, 327, 435, 615, 1052
MbiI CCGCTC 1 cut(s) 503
MboI GATC 5 cut(s) 57, 325, 433, 613, 1050
MboII GAAGA 8 cut(s) 17, 27, 273, 299, 313, 316, 775, 1081
MfeI CAATTG 2 cut(s) 480, 699
MflI RGATCY 3 cut(s) 325, 613, 1050
MlyI GAGTC 3 cut(s) 273, 806, 959
Mph1103I ATGCAT 1 cut(s) 1000
MroNI GCCGGC 1 cut(s) 313
MseI TTAA 3 cut(s) 558, 635, 1070
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 3 cut(s) 314, 954, 1048
MspR9I CCNGG 2 cut(s) 647, 955
MunI CAATTG 2 cut(s) 480, 699
Mva1269I GAATGC 1 cut(s) 240
MvaI CCWGG 1 cut(s) 647
MwoI GCNNNNNNNGC 2 cut(s) 134, 665
NaeI GCCGGC 1 cut(s) 315
NciI CCSGG 1 cut(s) 955
NdeII GATC 5 cut(s) 57, 325, 433, 613, 1050
NgoMIV GCCGGC 1 cut(s) 313
NlaIV GGNNCC 2 cut(s) 327, 1052
NsiI ATGCAT 1 cut(s) 1000
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PctI GAATGC 1 cut(s) 240
PdiI GCCGGC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 645
PkrI GCNGC 6 cut(s) 94, 339, 502, 696, 775, 992
PleI GAGTC 3 cut(s) 272, 806, 958
PpsI GAGTC 3 cut(s) 272, 806, 958
PshBI ATTAAT 1 cut(s) 558
Psp6I CCWGG 1 cut(s) 645
PspGI CCWGG 1 cut(s) 645
PspN4I GGNNCC 2 cut(s) 327, 1052
PspPI GGNCC 1 cut(s) 956
PstNI CAGNNNCTG 2 cut(s) 750, 944
PsuI RGATCY 3 cut(s) 325, 613, 1050
RsaI GTAC 2 cut(s) 711, 1007
RsaNI GTAC 2 cut(s) 710, 1006
SaqAI TTAA 3 cut(s) 558, 635, 1070
SatI GCNGC 6 cut(s) 93, 338, 501, 695, 774, 991
Sau3AI GATC 5 cut(s) 57, 325, 433, 613, 1050
Sau96I GGNCC 1 cut(s) 956
SchI GAGTC 3 cut(s) 273, 806, 959
ScrFI CCNGG 2 cut(s) 647, 955
SfaNI GCATC 3 cut(s) 917, 985, 1007
SfcI CTRYAG 1 cut(s) 240
SsiI CCGC 3 cut(s) 128, 501, 695
SspI AATATT 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 645, 953
TaaI ACNGT 2 cut(s) 414, 946
TaqI TCGA 2 cut(s) 729, 791
TatI WGTACW 1 cut(s) 1005
TauI GCSGC 2 cut(s) 503, 697
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 3 cut(s) 558, 635, 1070
Tru9I TTAA 3 cut(s) 558, 635, 1070
TscAI CASTG 2 cut(s) 582, 666
TseI GCWGC 4 cut(s) 92, 337, 773, 990
TspDTI ATGAA 6 cut(s) 21, 27, 268, 504, 514, 1016
TspRI CASTG 2 cut(s) 582, 666
Van91I CCANNNNNTGG 1 cut(s) 212
VspI ATTAAT 1 cut(s) 558
XapI RAATTY 4 cut(s) 21, 331, 637, 1085
Zsp2I ATGCAT 1 cut(s) 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.