Rmu_ssc0000114.1_g000053

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000114.1
OG0000393
Physical Location & Seq
Reverse (-)
277664 .. 279348
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000114.1_g000053.1.cds

Sequence Viewer

Length: 456 bp
ctggggatcaaagaatacttgccagcctatcttgatccagatctacaagagacagaattgcttactggagtaaactttgcttcaagcggctcagggtatgatcccttgacatctacaattatgaatgctatgccattatcaaaacagttagacatgttgaaggaatgcattgagaagctgaacaagtatgtcggagaagagaaggcgaacagcattataagcaacagctttttcatggtggaaactggaagtgatgaccttgtgaatacctactatcgtacaccgacacgtttctttcagtatgatatttatgcctacactgatctccttctcaccgaggcttcggcatttgtgcagttatcatcctacggaaaaagcatatcagattcatacccatcaagtactccaaaactccatccattctttcttctgatcatggaagatgccgctggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

151

Amino Acids

16.88

Weight (kDa)

4.35

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AciI CCGC 2 cut(s) 87, 447
AclWI GGATC 3 cut(s) 14, 29, 95
AfaI GTAC 2 cut(s) 280, 403
AflIII ACRYGT 2 cut(s) 153, 287
AgsI TTSAA 2 cut(s) 84, 160
AluBI AGCT 2 cut(s) 178, 228
AluI AGCT 2 cut(s) 178, 228
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 3 cut(s) 14, 29, 95
AsuHPI GGTGA 1 cut(s) 325
BccI CCATC 2 cut(s) 403, 423
BclI TGATCA 1 cut(s) 432
BcoDI GTCTC 1 cut(s) 44
BglII AGATCT 1 cut(s) 40
BisI GCNGC 2 cut(s) 88, 447
BlsI GCNGC 2 cut(s) 89, 448
BmcAI AGTACT 1 cut(s) 403
BmsI GCATC 1 cut(s) 433
BpmI CTGGAG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 336
Bse1I ACTGG 2 cut(s) 70, 250
Bse8I GATNNNNATC 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 2 cut(s) 362, 415
BseJI GATNNNNATC 1 cut(s) 39
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 70, 250
BsgI GTGCAG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 44
BsmI GAATGC 2 cut(s) 130, 170
Bsp143I GATC 6 cut(s) 6, 34, 40, 100, 322, 432
BspACI CCGC 2 cut(s) 87, 447
BspCNI CTCAG 1 cut(s) 104
BspPI GGATC 3 cut(s) 14, 29, 95
BsrI ACTGG 2 cut(s) 70, 250
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 6 cut(s) 6, 34, 40, 100, 322, 432
Bst4CI ACNGT 1 cut(s) 147
Bst6I CTCTTC 1 cut(s) 192
BstC8I GCNNGC 2 cut(s) 24, 451
BstDEI CTNAG 1 cut(s) 91
BstF5I GGATG 2 cut(s) 362, 415
BstKTI GATC 6 cut(s) 9, 37, 43, 103, 325, 435
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 6 cut(s) 6, 34, 40, 100, 322, 432
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstNSI RCATGY 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BtsCI GGATG 2 cut(s) 362, 415
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 2 cut(s) 24, 451
Csp6I GTAC 2 cut(s) 279, 402
CviAII CATG 3 cut(s) 154, 235, 436
CviJI RGCY 6 cut(s) 26, 90, 178, 228, 341, 453
CviKI_1 RGCY 6 cut(s) 26, 90, 178, 228, 341, 453
CviQI GTAC 2 cut(s) 279, 402
DdeI CTNAG 1 cut(s) 91
DpnI GATC 6 cut(s) 8, 36, 42, 102, 324, 434
DpnII GATC 6 cut(s) 6, 34, 40, 100, 322, 432
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 170
FaeI CATG 3 cut(s) 157, 238, 439
FatI CATG 3 cut(s) 153, 234, 435
FbaI TGATCA 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 88, 447
FokI GGATG 2 cut(s) 349, 402
Fsp4HI GCNGC 2 cut(s) 88, 447
GluI GCNGC 2 cut(s) 88, 447
GsuI CTGGAG 1 cut(s) 87
Hin1II CATG 3 cut(s) 157, 238, 439
HinfI GANTC 1 cut(s) 386
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 2 cut(s) 73, 281
Hpy188I TCNGA 3 cut(s) 194, 385, 432
Hpy188III TCNNGA 2 cut(s) 32, 38
Hpy8I GTNNAC 2 cut(s) 73, 281
HpyAV CCTTC 3 cut(s) 154, 196, 338
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 2 cut(s) 168, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
HpyF3I CTNAG 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 3 cut(s) 157, 238, 439
Ksp22I TGATCA 1 cut(s) 432
Kzo9I GATC 6 cut(s) 6, 34, 40, 100, 322, 432
LpnPI CCDG 6 cut(s) 36, 51, 51, 78, 231, 435
LweI GCATC 1 cut(s) 433
MaeII ACGT 1 cut(s) 289
MalI GATC 6 cut(s) 8, 36, 42, 102, 324, 434
MboI GATC 6 cut(s) 6, 34, 40, 100, 322, 432
MboII GAAGA 3 cut(s) 209, 419, 452
MflI RGATCY 1 cut(s) 40
MluCI AATT 2 cut(s) 56, 117
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 1 cut(s) 331
Mph1103I ATGCAT 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 449
Mva1269I GAATGC 2 cut(s) 130, 170
MwoI GCNNNNNNNGC 1 cut(s) 219
NdeII GATC 6 cut(s) 6, 34, 40, 100, 322, 432
NlaIII CATG 3 cut(s) 157, 238, 439
NsiI ATGCAT 1 cut(s) 170
NspI RCATGY 1 cut(s) 157
PciI ACATGT 1 cut(s) 153
PctI GAATGC 2 cut(s) 130, 170
PfeI GAWTC 1 cut(s) 386
PkrI GCNGC 2 cut(s) 89, 448
PscI ACATGT 1 cut(s) 153
PsiI TTATAA 1 cut(s) 218
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 2 cut(s) 280, 403
RsaNI GTAC 2 cut(s) 279, 402
SatI GCNGC 2 cut(s) 88, 447
Sau3AI GATC 6 cut(s) 6, 34, 40, 100, 322, 432
ScaI AGTACT 1 cut(s) 403
SetI ASST 5 cut(s) 180, 230, 261, 272, 292
SfaNI GCATC 1 cut(s) 433
Sse9I AATT 2 cut(s) 56, 117
SsiI CCGC 2 cut(s) 87, 447
TaaI ACNGT 1 cut(s) 147
TaiI ACGT 1 cut(s) 292
TasI AATT 2 cut(s) 56, 117
TatI WGTACW 1 cut(s) 401
TauI GCSGC 2 cut(s) 90, 449
TfiI GAWTC 1 cut(s) 386
TscAI CASTG 1 cut(s) 325
TspDTI ATGAA 3 cut(s) 137, 223, 378
TspGWI ACGGA 1 cut(s) 384
TspRI CASTG 1 cut(s) 325
XceI RCATGY 1 cut(s) 157
ZrmI AGTACT 1 cut(s) 403
Zsp2I ATGCAT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.