RLG00000011086

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000393
Physical Location & Seq
Reverse (-)
6663328 .. 6664835
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011086

Sequence Viewer

Length: 1026 bp
ATGACTTACAATGTCCTATGGTTGTTTCTTTCTCTGGATCTGATATTTACCAGTGCCCTAGCTATTGTTAAGCTACCGAAAAATGCAACAGTTCCTGCTGTCTTTATGTTCGGAGATTCGATAGTCGACACAGGCAACAATAACAACCTAACAACCATTATAAAAAGCAATTTCCCTCCCTACGGAAGAGACTTTCCCGGAGGAGTTCCAACAGGAAGATTTAGCAATGGCAAGGTTGCATCCGACTTCGTTGCGGAGGAACTGGGGGTCAAAGAATACTTGCCAGCCTATCTTGATCCAGATCTACAAGAGACGGACTTGCTTACTGGAGTAAACTTTGCTTCAAGCGGCTCAGGGTATGATCCCTTGACATCTACAATTATGAATGCTATGCCATTATCAAAACAGTTAGACATGTTGAAGGAATGCGTTGACAAGCTGAACAAGTATGTCGGAGAAGAGAAGGCGAACAGCGTTATAAGCAACAGCTTTTTCATGGTAGAAACAGGAAGTGATGACCTTGTGAATACCTACTATCGTACACCGACACGTTTCTTTCAGTATGATATATATGCCTACACTGATCTCCTTCTCACCGAGGCTTCGGCATTTGTGCAGAAATTATATGAATTGGGAGCACGGAGGATAGGGATCATAAGTCTGCCACCAGTTGGATGTATACCATCACAGAGAACATTAGCAGGAGGTACAGAAAGAAGGTGCGTCGAGAAGTACAACGAAGCGGCTGAGCTATTCAACACCAAGTTATCAGCGATGGCAGATTTTCAGACCAATAACCTACCAGATGCCAGAGTCGTCTTCATGGATGCATACAATCCTTTCCTTCATATCCTCCAACACACACACAAATATGGATTTGAAGTTGTGGATAAAGGGTGTTGCGGAACAGGGATGATAGAGGTGATCTTCCTTTGTAATAGATGGGCTCCTAACACATGTACAAACGTGTCGAGATGCCGCTCGCTGATGATCATCGATCTGGCCTTGCTGGATATTCATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

342

Amino Acids

37.91

Weight (kDa)

5.02

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 34 - 304 1.2e-27 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 161, 479
AccB7I CCANNNNNTGG 1 cut(s) 671
AccBSI CCGCTC 1 cut(s) 981
AccI GTMKAC 2 cut(s) 126, 679
AciI CCGC 5 cut(s) 254, 348, 743, 903, 979
AclWI GGATC 4 cut(s) 45, 290, 356, 659
AfaI GTAC 4 cut(s) 541, 709, 734, 961
AfiI CCNNNNNNNGG 2 cut(s) 182, 671
AflIII ACRYGT 4 cut(s) 414, 548, 956, 966
AgsI TTSAA 4 cut(s) 345, 421, 757, 881
AluBI AGCT 5 cut(s) 62, 73, 439, 489, 751
AluI AGCT 5 cut(s) 62, 73, 439, 489, 751
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 2 cut(s) 183, 305
AlwI GGATC 4 cut(s) 45, 290, 356, 659
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 1 cut(s) 1002
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 586, 934
BaeGI GKGCMC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 949
BbsI GAAGAC 1 cut(s) 811
Bbv12I GWGCWC 1 cut(s) 640
BccI CCATC 3 cut(s) 691, 769, 936
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BclI TGATCA 1 cut(s) 990
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 2 cut(s) 183, 305
BfaI CTAG 1 cut(s) 59
BglII AGATCT 1 cut(s) 301
BisI GCNGC 3 cut(s) 349, 744, 979
BlpI GCTNAGC 1 cut(s) 747
BlsI GCNGC 3 cut(s) 350, 745, 980
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 948
BmrFI CCNGG 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 272
BmsI GCATC 4 cut(s) 248, 796, 817, 965
BmuI ACTGGG 1 cut(s) 272
BpiI GAAGAC 1 cut(s) 811
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 352
Bpu1102I GCTNAGC 1 cut(s) 747
BpuMI CCSGG 1 cut(s) 198
Bsa29I ATCGAT 1 cut(s) 996
BsaBI GATNNNNATC 3 cut(s) 300, 650, 992
BsaJI CCNNGG 1 cut(s) 597
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 671
Bse1I ACTGG 4 cut(s) 51, 267, 331, 668
Bse3DI GCAATG 1 cut(s) 232
Bse8I GATNNNNATC 3 cut(s) 300, 650, 992
BseCI ATCGAT 1 cut(s) 996
BseDI CCNNGG 1 cut(s) 597
BseGI GGATG 4 cut(s) 239, 680, 832, 918
BseJI GATNNNNATC 3 cut(s) 300, 650, 992
BseLI CCNNNNNNNGG 2 cut(s) 182, 671
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 366, 738
BseNI ACTGG 4 cut(s) 51, 267, 331, 668
BseRI GAGGAG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 58
BsgI GTGCAG 1 cut(s) 635
BshFI GGCC 1 cut(s) 1004
BshVI ATCGAT 1 cut(s) 996
BsiHKAI GWGCWC 1 cut(s) 640
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 182, 671
BsmAI GTCTC 2 cut(s) 183, 305
BsmBI CGTCTC 1 cut(s) 305
BsmI GAATGC 2 cut(s) 391, 431
BsnI GGCC 1 cut(s) 1004
Bsp1286I GDGCHC 3 cut(s) 58, 640, 949
Bsp1407I TGTACA 1 cut(s) 959
Bsp143I GATC 9 cut(s) 37, 295, 301, 361, 583, 651, 924, 990, 997
Bsp1720I GCTNAGC 1 cut(s) 747
BspACI CCGC 5 cut(s) 254, 348, 743, 903, 979
BspANI GGCC 1 cut(s) 1004
BspCNI CTCAG 2 cut(s) 365, 739
BspDI ATCGAT 1 cut(s) 996
BspLI GGNNCC 1 cut(s) 948
BspPI GGATC 4 cut(s) 45, 290, 356, 659
BsrBI CCGCTC 1 cut(s) 981
BsrDI GCAATG 1 cut(s) 232
BsrGI TGTACA 1 cut(s) 959
BsrI ACTGG 4 cut(s) 51, 267, 331, 668
BssECI CCNNGG 1 cut(s) 597
BssMI GATC 9 cut(s) 37, 295, 301, 361, 583, 651, 924, 990, 997
BssNAI GTATAC 1 cut(s) 680
Bst1107I GTATAC 1 cut(s) 680
Bst4CI ACNGT 2 cut(s) 91, 408
Bst6I CTCTTC 2 cut(s) 181, 453
BstAUI TGTACA 1 cut(s) 959
BstC8I GCNNGC 2 cut(s) 285, 983
BstDEI CTNAG 2 cut(s) 352, 747
BstF5I GGATG 4 cut(s) 239, 680, 832, 918
BstKTI GATC 9 cut(s) 40, 298, 304, 364, 586, 654, 927, 993, 1000
BstMAI GTCTC 2 cut(s) 183, 305
BstMBI GATC 9 cut(s) 37, 295, 301, 361, 583, 651, 924, 990, 997
BstMWI GCNNNNNNNGC 1 cut(s) 480
BstNSI RCATGY 2 cut(s) 418, 960
BstSCI CCNGG 1 cut(s) 196
BstSLI GKGCMC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 811
BstX2I RGATCY 2 cut(s) 37, 301
BstYI RGATCY 2 cut(s) 37, 301
BstZ17I GTATAC 1 cut(s) 680
Bsu15I ATCGAT 1 cut(s) 996
BsuRI GGCC 1 cut(s) 1004
BsuTUI ATCGAT 1 cut(s) 996
BtgZI GCGATG 1 cut(s) 788
BtsCI GGATG 4 cut(s) 239, 680, 832, 918
BtsIMutI CAGTG 2 cut(s) 58, 579
Cac8I GCNNGC 2 cut(s) 285, 983
CaiI CAGNNNCTG 1 cut(s) 95
ClaI ATCGAT 1 cut(s) 996
CseI GACGC 1 cut(s) 712
Csp6I GTAC 4 cut(s) 540, 708, 733, 960
CviAII CATG 5 cut(s) 415, 496, 823, 957, 1019
CviQI GTAC 4 cut(s) 540, 708, 733, 960
DdeI CTNAG 2 cut(s) 352, 747
DpnI GATC 9 cut(s) 39, 297, 303, 363, 585, 653, 926, 992, 999
DpnII GATC 9 cut(s) 37, 295, 301, 361, 583, 651, 924, 990, 997
Eam1104I CTCTTC 2 cut(s) 181, 453
EarI CTCTTC 2 cut(s) 181, 453
Eco24I GRGCYC 1 cut(s) 949
EcoT22I ATGCAT 1 cut(s) 832
EcoT38I GRGCYC 1 cut(s) 949
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 5 cut(s) 418, 499, 826, 960, 1022
FatI CATG 5 cut(s) 414, 495, 822, 956, 1018
FbaI TGATCA 1 cut(s) 990
FblI GTMKAC 2 cut(s) 126, 679
Fnu4HI GCNGC 3 cut(s) 349, 744, 979
FokI GGATG 4 cut(s) 226, 687, 839, 925
FriOI GRGCYC 1 cut(s) 949
Fsp4HI GCNGC 3 cut(s) 349, 744, 979
FspBI CTAG 1 cut(s) 59
GluI GCNGC 3 cut(s) 349, 744, 979
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 1004
HapII CCGG 1 cut(s) 198
HgaI GACGC 1 cut(s) 712
Hin1II CATG 5 cut(s) 418, 499, 826, 960, 1022
HincII GTYRAC 2 cut(s) 127, 433
HindII GTYRAC 2 cut(s) 127, 433
HinfI GANTC 2 cut(s) 116, 813
HpaII CCGG 1 cut(s) 198
HphI GGTGA 2 cut(s) 586, 934
Hpy166II GTNNAC 5 cut(s) 127, 334, 433, 542, 680
Hpy188I TCNGA 5 cut(s) 42, 113, 244, 455, 789
Hpy188III TCNNGA 5 cut(s) 35, 293, 299, 727, 972
Hpy8I GTNNAC 5 cut(s) 127, 334, 433, 542, 680
Hpy99I CGWCG 1 cut(s) 728
HpyAV CCTTC 5 cut(s) 415, 457, 599, 711, 854
HpyCH4III ACNGT 2 cut(s) 91, 408
HpyCH4IV ACGT 2 cut(s) 550, 966
HpyCH4V TGCA 4 cut(s) 86, 239, 616, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 480
HpyF3I CTNAG 2 cut(s) 352, 747
HpySE526I ACGT 2 cut(s) 550, 966
Hsp92II CATG 5 cut(s) 418, 499, 826, 960, 1022
Ksp22I TGATCA 1 cut(s) 990
Kzo9I GATC 9 cut(s) 37, 295, 301, 361, 583, 651, 924, 990, 997
LmnI GCTCC 2 cut(s) 635, 952
LweI GCATC 4 cut(s) 248, 796, 817, 965
MaeI CTAG 1 cut(s) 59
MaeII ACGT 2 cut(s) 550, 966
MalI GATC 9 cut(s) 39, 297, 303, 363, 585, 653, 926, 992, 999
MbiI CCGCTC 1 cut(s) 981
MboI GATC 9 cut(s) 37, 295, 301, 361, 583, 651, 924, 990, 997
MboII GAAGA 5 cut(s) 198, 228, 470, 811, 919
MflI RGATCY 2 cut(s) 37, 301
MhlI GDGCHC 3 cut(s) 58, 640, 949
MluCI AATT 4 cut(s) 169, 378, 620, 629
MlyI GAGTC 1 cut(s) 822
MmeI TCCRAC 5 cut(s) 233, 267, 433, 652, 880
MnlI CCTC 8 cut(s) 186, 194, 250, 592, 636, 698, 863, 913
Mph1103I ATGCAT 1 cut(s) 832
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 870
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 198
Mva1269I GAATGC 2 cut(s) 391, 431
MwoI GCNNNNNNNGC 1 cut(s) 480
NciI CCSGG 1 cut(s) 198
NdeII GATC 9 cut(s) 37, 295, 301, 361, 583, 651, 924, 990, 997
NlaIII CATG 5 cut(s) 418, 499, 826, 960, 1022
NlaIV GGNNCC 1 cut(s) 948
NsiI ATGCAT 1 cut(s) 832
NspI RCATGY 2 cut(s) 418, 960
PciI ACATGT 2 cut(s) 414, 956
PctI GAATGC 2 cut(s) 391, 431
PfeI GAWTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 671
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 3 cut(s) 350, 745, 980
PleI GAGTC 1 cut(s) 821
PpsI GAGTC 1 cut(s) 821
PscI ACATGT 2 cut(s) 414, 956
PsiI TTATAA 2 cut(s) 161, 479
PspN4I GGNNCC 1 cut(s) 948
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 2 cut(s) 37, 301
RsaI GTAC 4 cut(s) 541, 709, 734, 961
RsaNI GTAC 4 cut(s) 540, 708, 733, 960
RseI CAYNNNNRTG 1 cut(s) 870
SalI GTCGAC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 3 cut(s) 349, 744, 979
Sau3AI GATC 9 cut(s) 37, 295, 301, 361, 583, 651, 924, 990, 997
SchI GAGTC 1 cut(s) 822
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 3 cut(s) 58, 640, 949
SfaNI GCATC 4 cut(s) 248, 796, 817, 965
SmiMI CAYNNNNRTG 1 cut(s) 870
Sse9I AATT 4 cut(s) 169, 378, 620, 629
SsiI CCGC 5 cut(s) 254, 348, 743, 903, 979
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 2 cut(s) 91, 408
TaiI ACGT 2 cut(s) 553, 969
TaqI TCGA 5 cut(s) 119, 126, 726, 971, 996
TasI AATT 4 cut(s) 169, 378, 620, 629
TatI WGTACW 2 cut(s) 732, 959
TauI GCSGC 3 cut(s) 351, 746, 981
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 2 cut(s) 58, 586
TspDTI ATGAA 6 cut(s) 398, 484, 642, 811, 836, 1007
TspGWI ACGGA 3 cut(s) 198, 329, 655
TspRI CASTG 2 cut(s) 58, 586
Van91I CCANNNNNTGG 1 cut(s) 671
XceI RCATGY 2 cut(s) 418, 960
XmiI GTMKAC 2 cut(s) 126, 679
XspI CTAG 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.