RchiOBHm_Chr2g0130201

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000393
Physical Location & Seq
Reverse (-)
46151261 .. 46152768
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50171

Sequence Viewer

Length: 1074 bp
ATGGCTTTTCTCTCCCAAATACTTGTTCCTTCATCTTCATCTGTCGAAATTTTCTCAATCATTGCAGTCATTTTCCTCTCCCATAATGTTGCTGCAGTAACAGCAGCCACAAATAAAACAACTAGAGCAGTTTTTACTTTCGGAGATTCAATAATGGACACGGGCAATAATGACTACATCATTTCTATAGCCAAAAGCAATTTCCCACCTTATGGGAGAGACTTTGCGGGAGGAAAGCCTACTGGAAGATTTAGCAATGGAAAAGTCGCCTCAGATTTTGCTGTGAAGAAGATTTTGCCGGCTTATCTGGATCCGAAATTGCAGCTTCAAGACCTACTTACTGGTGTATGTTTTGCCTCAGCAGGATCAGGATATGACCCTCTCACTGCCAAATTACTTTCTGTCTTGTCACTACCAGATCAATTAGACTTGTTTAAAAAATACAAAAGCAAGATAACTGCAGCAGTTGGGAATGAAAGAACAGCCACTATACTGTCGAAAAGCATTTCCTTTCTTTCCATGGGAAGCAATGACCTTGCAATTGATTATTTTTCTACACCACTAAGGAGCCCTCACTATGATATTCCAGCTTATACAGATCTCATGATCGAATCAGCTTCAAATTTCTTGCAGGAACTTCATGCACTGGGATTAAGAGTGATCGGAGTAATATGTATACCACCAATTGGGTGTTTGCCAGCACAGAGAACACTTAATGGAGGTATAAAGAGAGCGTGCTACGAAACCGGGAATCAAGCAGCAACCCTTTTCAACTCGAAGCTCTCCCACCTTATAGATTCCCTCAATGAGAGACTTCCAGAAGCACACCTCATGTACCTTGATAGCTACAGCCCTGCGCTTTCCCTGATCCAAAACCCTGCTCAATATGGTTTTGAAGTGGTGGATAAAGGATGCTGTGGAACAGGAGATCTTGAAATTGGCCCTCTGTGTAACAAAGACACCCCGGGTACTTGTAACGATGTGTCCAAGTACATATTCTGGGATAGCTTTCATCCTACAGAGAAGGCATACAGGATCCTCACCTCTATTATTTTCAAAGGAGTTGAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

357

Amino Acids

38.68

Weight (kDa)

6.31

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 44 - 348 9.3e-31 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 212, 686
AccI GTMKAC 1 cut(s) 676
AciI CCGC 1 cut(s) 227
AclWI GGATC 6 cut(s) 305, 318, 373, 862, 1030, 1043
AcsI RAATTY 2 cut(s) 48, 622
AfaI GTAC 3 cut(s) 836, 970, 992
AfiI CCNNNNNNNGG 2 cut(s) 212, 686
AgsI TTSAA 7 cut(s) 150, 329, 621, 772, 896, 935, 1057
AjuI GAANNNNNNNTTGG 6 cut(s) 9, 41, 185, 217, 980, 1012
AluBI AGCT 6 cut(s) 325, 590, 617, 781, 846, 1008
AluI AGCT 6 cut(s) 325, 590, 617, 781, 846, 1008
Alw26I GTCTC 2 cut(s) 213, 805
AlwI GGATC 6 cut(s) 305, 318, 373, 862, 1030, 1043
Ama87I CYCGRG 1 cut(s) 964
AoxI GGCC 1 cut(s) 940
ApeKI GCWGC 5 cut(s) 92, 104, 322, 461, 758
ApoI RAATTY 2 cut(s) 48, 622
AspLEI GCGC 1 cut(s) 859
AspS9I GGNCC 1 cut(s) 941
AsuC2I CCSGG 3 cut(s) 748, 965, 966
AsuHPI GGTGA 1 cut(s) 1033
AvaI CYCGRG 1 cut(s) 964
BamHI GGATCC 2 cut(s) 310, 1035
BanII GRGCYC 1 cut(s) 572
BbvCI CCTCAGC 1 cut(s) 358
BbvI GCAGC 5 cut(s) 79, 116, 334, 473, 770
BcnI CCSGG 3 cut(s) 748, 965, 966
BcoDI GTCTC 2 cut(s) 213, 805
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 5 cut(s) 93, 186, 459, 847, 1017
BglII AGATCT 2 cut(s) 598, 928
BisI GCNGC 5 cut(s) 93, 105, 323, 462, 759
BlsI GCNGC 5 cut(s) 94, 106, 324, 463, 760
Bme1390I CCNGG 3 cut(s) 748, 965, 966
BmeT110I CYCGRG 1 cut(s) 964
BmgT120I GGNCC 1 cut(s) 941
BmiI GGNNCC 3 cut(s) 312, 569, 1037
BmrFI CCNGG 3 cut(s) 748, 965, 966
BmrI ACTGGG 1 cut(s) 656
BmsI GCATC 1 cut(s) 902
BmuI ACTGGG 1 cut(s) 656
Bpu10I CCTNAGC 1 cut(s) 358
BpuMI CCSGG 3 cut(s) 748, 965, 966
BsaJI CCNNGG 3 cut(s) 519, 963, 964
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 686
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 3 cut(s) 247, 346, 651
Bse3DI GCAATG 3 cut(s) 60, 262, 535
BseDI CCNNGG 3 cut(s) 519, 963, 964
BseGI GGATG 2 cut(s) 917, 1012
BseLI CCNNNNNNNGG 2 cut(s) 212, 686
BseMI GCAATG 3 cut(s) 60, 262, 535
BseMII CTCAG 2 cut(s) 285, 372
BseNI ACTGG 3 cut(s) 247, 346, 651
BseXI GCAGC 5 cut(s) 79, 116, 334, 473, 770
BshFI GGCC 1 cut(s) 942
BsiHKCI CYCGRG 1 cut(s) 964
BsiSI CCGG 3 cut(s) 299, 747, 965
BslI CCNNNNNNNGG 2 cut(s) 212, 686
BsmAI GTCTC 2 cut(s) 213, 805
BsnI GGCC 1 cut(s) 942
BsoBI CYCGRG 1 cut(s) 964
Bsp1286I GDGCHC 1 cut(s) 572
Bsp143I GATC 9 cut(s) 310, 365, 418, 598, 606, 660, 867, 928, 1035
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 942
BspCNI CTCAG 2 cut(s) 284, 371
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 3 cut(s) 312, 569, 1037
BspMAI CTGCAG 2 cut(s) 97, 463
BspPI GGATC 6 cut(s) 305, 318, 373, 862, 1030, 1043
BsrDI GCAATG 3 cut(s) 60, 262, 535
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 3 cut(s) 247, 346, 651
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 3 cut(s) 519, 963, 964
BssMI GATC 9 cut(s) 310, 365, 418, 598, 606, 660, 867, 928, 1035
BssNAI GTATAC 1 cut(s) 677
BssT1I CCWWGG 1 cut(s) 519
Bst1107I GTATAC 1 cut(s) 677
Bst4CI ACNGT 1 cut(s) 495
BstC8I GCNNGC 3 cut(s) 300, 699, 736
BstDEI CTNAG 3 cut(s) 271, 358, 563
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 2 cut(s) 917, 1012
BstHHI GCGC 1 cut(s) 859
BstKTI GATC 9 cut(s) 313, 368, 421, 601, 609, 663, 870, 931, 1038
BstMAI GTCTC 2 cut(s) 213, 805
BstMBI GATC 9 cut(s) 310, 365, 418, 598, 606, 660, 867, 928, 1035
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstSCI CCNGG 3 cut(s) 746, 963, 964
BstSFI CTRYAG 5 cut(s) 93, 186, 459, 847, 1017
BstV1I GCAGC 5 cut(s) 79, 116, 334, 473, 770
BstX2I RGATCY 4 cut(s) 310, 598, 928, 1035
BstYI RGATCY 4 cut(s) 310, 598, 928, 1035
BstZ17I GTATAC 1 cut(s) 677
BsuRI GGCC 1 cut(s) 942
BtgI CCRYGG 1 cut(s) 519
BtsCI GGATG 2 cut(s) 917, 1012
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 2 cut(s) 384, 644
Cac8I GCNNGC 3 cut(s) 300, 699, 736
CciI TCATGA 1 cut(s) 603
CfoI GCGC 1 cut(s) 859
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 1 cut(s) 941
Cfr9I CCCGGG 1 cut(s) 964
Csp6I GTAC 3 cut(s) 835, 969, 991
CviAII CATG 4 cut(s) 520, 604, 641, 832
CviQI GTAC 3 cut(s) 835, 969, 991
DdeI CTNAG 3 cut(s) 271, 358, 563
DpnI GATC 9 cut(s) 312, 367, 420, 600, 608, 662, 869, 930, 1037
DpnII GATC 9 cut(s) 310, 365, 418, 598, 606, 660, 867, 928, 1035
DraI TTTAAA 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 519
Eco24I GRGCYC 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 964
EcoT14I CCWWGG 1 cut(s) 519
EcoT38I GRGCYC 1 cut(s) 572
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 4 cut(s) 523, 607, 644, 835
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 4 cut(s) 519, 603, 640, 831
FauI CCCGC 1 cut(s) 220
FblI GTMKAC 1 cut(s) 676
Fnu4HI GCNGC 5 cut(s) 93, 105, 323, 462, 759
FokI GGATG 2 cut(s) 924, 999
FriOI GRGCYC 1 cut(s) 572
Fsp4HI GCNGC 5 cut(s) 93, 105, 323, 462, 759
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 858
GluI GCNGC 5 cut(s) 93, 105, 323, 462, 759
HaeIII GGCC 1 cut(s) 942
HapII CCGG 3 cut(s) 299, 747, 965
HhaI GCGC 1 cut(s) 859
Hin1II CATG 4 cut(s) 523, 607, 644, 835
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HinfI GANTC 4 cut(s) 146, 611, 751, 797
HpaII CCGG 3 cut(s) 299, 747, 965
HphI GGTGA 1 cut(s) 1033
Hpy166II GTNNAC 1 cut(s) 677
Hpy188I TCNGA 4 cut(s) 143, 274, 315, 665
Hpy188III TCNNGA 6 cut(s) 308, 329, 369, 604, 818, 932
Hpy8I GTNNAC 1 cut(s) 677
HpyAV CCTTC 2 cut(s) 39, 1018
HpyCH4III ACNGT 1 cut(s) 495
HpyCH4V TGCA 7 cut(s) 65, 95, 322, 461, 539, 631, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 3 cut(s) 271, 358, 563
Hsp92II CATG 4 cut(s) 523, 607, 644, 835
HspAI GCGC 1 cut(s) 857
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Kzo9I GATC 9 cut(s) 310, 365, 418, 598, 606, 660, 867, 928, 1035
LmnI GCTCC 1 cut(s) 567
Lsp1109I GCAGC 5 cut(s) 79, 116, 334, 473, 770
LweI GCATC 1 cut(s) 902
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 4 cut(s) 97, 408, 950, 974
MalI GATC 9 cut(s) 312, 367, 420, 600, 608, 662, 869, 930, 1037
MboI GATC 9 cut(s) 310, 365, 418, 598, 606, 660, 867, 928, 1035
MboII GAAGA 4 cut(s) 27, 258, 298, 301
MfeI CAATTG 2 cut(s) 540, 684
MflI RGATCY 4 cut(s) 310, 598, 928, 1035
MhlI GDGCHC 1 cut(s) 572
MluCI AATT 9 cut(s) 48, 199, 317, 392, 422, 540, 622, 684, 936
MroNI GCCGGC 1 cut(s) 298
MseI TTAA 3 cut(s) 435, 653, 714
MspI CCGG 3 cut(s) 299, 747, 965
MspR9I CCNGG 3 cut(s) 748, 965, 966
MunI CAATTG 2 cut(s) 540, 684
MwoI GCNNNNNNNGC 1 cut(s) 101
NaeI GCCGGC 1 cut(s) 300
NciI CCSGG 3 cut(s) 748, 965, 966
NcoI CCATGG 1 cut(s) 519
NdeII GATC 9 cut(s) 310, 365, 418, 598, 606, 660, 867, 928, 1035
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 4 cut(s) 523, 607, 644, 835
NlaIV GGNNCC 3 cut(s) 312, 569, 1037
NmuCI GTSAC 1 cut(s) 408
PagI TCATGA 1 cut(s) 603
PdiI GCCGGC 1 cut(s) 300
PfeI GAWTC 4 cut(s) 146, 611, 751, 797
PflMI CCANNNNNTGG 2 cut(s) 212, 686
PkrI GCNGC 5 cut(s) 94, 106, 324, 463, 760
PspN4I GGNNCC 3 cut(s) 312, 569, 1037
PspPI GGNCC 1 cut(s) 941
PstI CTGCAG 2 cut(s) 97, 463
PsuI RGATCY 4 cut(s) 310, 598, 928, 1035
RsaI GTAC 3 cut(s) 836, 970, 992
RsaNI GTAC 3 cut(s) 835, 969, 991
SaqAI TTAA 3 cut(s) 435, 653, 714
SatI GCNGC 5 cut(s) 93, 105, 323, 462, 759
Sau3AI GATC 9 cut(s) 310, 365, 418, 598, 606, 660, 867, 928, 1035
Sau96I GGNCC 1 cut(s) 941
ScrFI CCNGG 3 cut(s) 748, 965, 966
SduI GDGCHC 1 cut(s) 572
SfaNI GCATC 1 cut(s) 902
SfcI CTRYAG 5 cut(s) 93, 186, 459, 847, 1017
SmaI CCCGGG 1 cut(s) 966
Sse9I AATT 9 cut(s) 48, 199, 317, 392, 422, 540, 622, 684, 936
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 3 cut(s) 746, 963, 964
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 1 cut(s) 495
TaqI TCGA 4 cut(s) 45, 497, 609, 776
TasI AATT 9 cut(s) 48, 199, 317, 392, 422, 540, 622, 684, 936
TatI WGTACW 1 cut(s) 990
TfiI GAWTC 4 cut(s) 146, 611, 751, 797
Tru1I TTAA 3 cut(s) 435, 653, 714
Tru9I TTAA 3 cut(s) 435, 653, 714
TscAI CASTG 2 cut(s) 391, 651
TseFI GTSAC 1 cut(s) 408
TseI GCWGC 5 cut(s) 92, 104, 322, 461, 758
Tsp45I GTSAC 1 cut(s) 408
TspDTI ATGAA 5 cut(s) 21, 27, 489, 629, 1001
TspMI CCCGGG 1 cut(s) 964
TspRI CASTG 2 cut(s) 391, 651
Van91I CCANNNNNTGG 2 cut(s) 212, 686
XapI RAATTY 2 cut(s) 48, 622
XmaI CCCGGG 1 cut(s) 964
XmiI GTMKAC 1 cut(s) 676
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.