MD15G1241700.v1.1

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000393
Physical Location & Seq
Reverse (-)
19914662 .. 19916858
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1241700.v1.1.491

Sequence Viewer

Length: 1122 bp
ATGCACATTTCAGTGTGTATTTTCAATTTTTCATCCACTAAAAATACAATGAAGTTTCTCTCCCAAAAACTTCTTCCCTCGTCATCGAAATTTTCTCACAAAAAAAATTTTCTGATCGTTATAGTTTTATTCTTCTACCACAATGTGGCTGCTGTAAAACTACCGAACAACGAAAAGATTCCTGCAGTGATTGTTTTCGGAGATTCAGTAGTGGATTCTGGAAACAATAACAATATTAGCACTCTAGTCAAATGTAATTTCCCACCATATGGGAGGGACTTTGTAGGACAAAGACCTACCGGAAGATTTGGCAATGGCAGAGTCCCCTCAGACTTGATAGCTTATCTGGATCCAAAGTTGAAGATTCAAGACTTACTTACTGGTGTAAGTTTTACCTCATGTGGCTCAGGATATGATCCTCTCACTCCCAAAATAGTGTCTGTCCTATCATTATCAGATCAAATAGACATGTTCAAAACTTATATAAACAAGATTACTGCAGCAGTCGGAAAGGAAAGCGCTGCAACTATACTATCGAAAAGCATATACATAGTGTGCACAGGAAGCAATGACATTGTGAATACTTATTTTTCAACACCACTGAGGAGACCTCGGTATGACATTTCAGCGTATACCGATCTCATGGTTGAATCAGCTTCAAGTTTCTTTCAGGAACTATATGGACTGGGAGCAAGGAGAATCGGAGTAGTAAGTCTGCCGCCAATCGGATGTTTGTCGTCGCAGAGAACACTGCGTGGAGGCAGGGACAGAGGGTGCTTAGAGACTATCAACCAAGCAGCAAGCCTCTTCAACTCCAAGCTCTCGCCTGAAGTAGATGCCTTTAACATGAGGCTTCCAGAAGCAAGGCTTGTCTACCTTGATGTCTATAACACATTGCTTTCCCTTATCCGAAACCCTACTCAATATGGATTTGAAGTGATGGATCAAGGATGCTGTGGAACAGGAAATATTAAGGTTAGCATTCTGTGTACTCGTTACTCTCCGGGAACCTGCAACGATGCATCAAAATACATATTCTGGGACAGTTACCATCCTTCGAAGAAGGGATATGAAGTAATAACCCCAATGGTTTTCGATTCGCAAGTTCAAAAATTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

374

Amino Acids

41.37

Weight (kDa)

9.1

Isoelectric Point (pI)

32.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 63 - 360 3e-27 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1019
AccB7I CCANNNNNTGG 2 cut(s) 145, 269
AccI GTMKAC 2 cut(s) 632, 873
AciI CCGC 1 cut(s) 719
AclWI GGATC 4 cut(s) 344, 357, 410, 951
AcsI RAATTY 3 cut(s) 89, 106, 1112
AcuI CTGAAG 1 cut(s) 849
AdeI CACNNNGTG 2 cut(s) 145, 755
AfaI GTAC 1 cut(s) 991
AfeI AGCGCT 1 cut(s) 520
AfiI CCNNNNNNNGG 3 cut(s) 145, 269, 725
AflIII ACRYGT 1 cut(s) 468
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 3 cut(s) 341, 656, 820
AluI AGCT 3 cut(s) 341, 656, 820
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 2 cut(s) 601, 776
Alw44I GTGCAC 1 cut(s) 556
AlwI GGATC 4 cut(s) 344, 357, 410, 951
Aor51HI AGCGCT 1 cut(s) 520
ApaLI GTGCAC 1 cut(s) 556
ApeKI GCWGC 4 cut(s) 149, 500, 521, 797
ApoI RAATTY 3 cut(s) 89, 106, 1112
Asp700I GAANNNNTTC 1 cut(s) 177
AspLEI GCGC 1 cut(s) 521
AsuC2I CCSGG 1 cut(s) 1005
AsuII TTCGAA 1 cut(s) 1058
BaeGI GKGCMC 1 cut(s) 560
BamHI GGATCC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 560
BbvI GCAGC 4 cut(s) 136, 508, 512, 809
BccI CCATC 2 cut(s) 934, 1059
BcnI CCSGG 1 cut(s) 1005
BcoDI GTCTC 2 cut(s) 601, 776
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 2 cut(s) 183, 498
BfoI RGCGCY 1 cut(s) 522
BfuAI ACCTGC 1 cut(s) 1019
BisI GCNGC 5 cut(s) 150, 501, 522, 719, 798
BlsI GCNGC 5 cut(s) 151, 502, 523, 720, 799
Bme1390I CCNGG 1 cut(s) 1005
BmiI GGNNCC 2 cut(s) 351, 1009
BmrFI CCNGG 1 cut(s) 1005
BmrI ACTGGG 1 cut(s) 695
BmsI GCATC 4 cut(s) 826, 941, 1009, 1031
BmuI ACTGGG 1 cut(s) 695
BplI GAGNNNNNCTC 2 cut(s) 595, 627
Bpu10I CCTNAGC 1 cut(s) 406
Bpu14I TTCGAA 1 cut(s) 1058
BpuMI CCSGG 1 cut(s) 1005
BsaI GGTCTC 1 cut(s) 601
BsaJI CCNNGG 1 cut(s) 611
BsaWI WCCGGW 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 269, 725
Bse1I ACTGG 2 cut(s) 385, 690
Bse3DI GCAATG 3 cut(s) 319, 574, 893
BseDI CCNNGG 1 cut(s) 611
BseGI GGATG 4 cut(s) 32, 734, 956, 1051
BseLI CCNNNNNNNGG 3 cut(s) 145, 269, 725
BseMI GCAATG 3 cut(s) 319, 574, 893
BseMII CTCAG 3 cut(s) 342, 420, 593
BseNI ACTGG 2 cut(s) 385, 690
BseRI GAGGAG 1 cut(s) 619
BseSI GKGCMC 1 cut(s) 560
BseXI GCAGC 4 cut(s) 136, 508, 512, 809
BsiHKAI GWGCWC 1 cut(s) 560
BsiSI CCGG 2 cut(s) 300, 1004
BslFI GGGAC 4 cut(s) 290, 308, 779, 1055
BslI CCNNNNNNNGG 3 cut(s) 145, 269, 725
BsmAI GTCTC 2 cut(s) 601, 776
BsmFI GGGAC 4 cut(s) 290, 308, 779, 1055
BsmI GAATGC 1 cut(s) 981
Bso31I GGTCTC 1 cut(s) 601
Bsp119I TTCGAA 1 cut(s) 1058
Bsp1286I GDGCHC 1 cut(s) 560
Bsp143I GATC 6 cut(s) 114, 349, 415, 457, 637, 943
BspACI CCGC 1 cut(s) 719
BspCNI CTCAG 3 cut(s) 341, 419, 594
BspLI GGNNCC 2 cut(s) 351, 1009
BspMAI CTGCAG 2 cut(s) 187, 502
BspMI ACCTGC 1 cut(s) 1019
BspPI GGATC 4 cut(s) 344, 357, 410, 951
BspT104I TTCGAA 1 cut(s) 1058
BspTNI GGTCTC 1 cut(s) 601
BsrDI GCAATG 3 cut(s) 319, 574, 893
BsrI ACTGG 2 cut(s) 385, 690
BssECI CCNNGG 1 cut(s) 611
BssMI GATC 6 cut(s) 114, 349, 415, 457, 637, 943
BssNAI GTATAC 1 cut(s) 633
Bst1107I GTATAC 1 cut(s) 633
Bst4CI ACNGT 1 cut(s) 1046
Bst6I CTCTTC 1 cut(s) 812
BstBI TTCGAA 1 cut(s) 1058
BstC8I GCNNGC 1 cut(s) 802
BstDEI CTNAG 4 cut(s) 328, 406, 602, 778
BstF5I GGATG 4 cut(s) 32, 734, 956, 1051
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 6 cut(s) 117, 352, 418, 460, 640, 946
BstMAI GTCTC 2 cut(s) 601, 776
BstMBI GATC 6 cut(s) 114, 349, 415, 457, 637, 943
BstMWI GCNNNNNNNGC 1 cut(s) 564
BstNSI RCATGY 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 1003
BstSFI CTRYAG 2 cut(s) 183, 498
BstSLI GKGCMC 1 cut(s) 560
BstV1I GCAGC 4 cut(s) 136, 508, 512, 809
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BstZ17I GTATAC 1 cut(s) 633
BtsCI GGATG 4 cut(s) 32, 734, 956, 1051
BtsI GCAGTG 2 cut(s) 192, 749
BtsIMutI CAGTG 4 cut(s) 18, 192, 599, 749
BveI ACCTGC 1 cut(s) 1019
Cac8I GCNNGC 1 cut(s) 802
CfoI GCGC 1 cut(s) 521
Csp6I GTAC 1 cut(s) 990
CviAII CATG 4 cut(s) 399, 469, 643, 847
CviJI RGCY 8 cut(s) 149, 341, 405, 656, 804, 820, 853, 868
CviKI_1 RGCY 8 cut(s) 149, 341, 405, 656, 804, 820, 853, 868
CviQI GTAC 1 cut(s) 990
DdeI CTNAG 4 cut(s) 328, 406, 602, 778
DpnI GATC 6 cut(s) 116, 351, 417, 459, 639, 945
DpnII GATC 6 cut(s) 114, 349, 415, 457, 637, 943
DraIII CACNNNGTG 2 cut(s) 145, 755
Eam1104I CTCTTC 1 cut(s) 812
EarI CTCTTC 1 cut(s) 812
Eco31I GGTCTC 1 cut(s) 601
Eco47III AGCGCT 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 849
EcoT22I ATGCAT 1 cut(s) 1024
FaeI CATG 4 cut(s) 402, 472, 646, 850
FalI AAGNNNNNCTT 4 cut(s) 360, 392, 852, 884
FaqI GGGAC 4 cut(s) 290, 308, 779, 1055
FatI CATG 4 cut(s) 398, 468, 642, 846
FauNDI CATATG 1 cut(s) 268
FblI GTMKAC 2 cut(s) 632, 873
Fnu4HI GCNGC 5 cut(s) 150, 501, 522, 719, 798
FokI GGATG 4 cut(s) 19, 741, 963, 1038
Fsp4HI GCNGC 5 cut(s) 150, 501, 522, 719, 798
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 520
GluI GCNGC 5 cut(s) 150, 501, 522, 719, 798
HaeII RGCGCY 1 cut(s) 522
HapII CCGG 2 cut(s) 300, 1004
HhaI GCGC 1 cut(s) 521
Hin1II CATG 4 cut(s) 402, 472, 646, 850
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HinfI GANTC 8 cut(s) 178, 203, 215, 321, 364, 650, 699, 1097
HpaII CCGG 2 cut(s) 300, 1004
Hpy166II GTNNAC 4 cut(s) 558, 633, 874, 990
Hpy188I TCNGA 9 cut(s) 114, 200, 331, 457, 509, 704, 728, 911, 1121
Hpy188III TCNNGA 6 cut(s) 219, 347, 368, 408, 671, 857
Hpy8I GTNNAC 4 cut(s) 558, 633, 874, 990
Hpy99I CGWCG 1 cut(s) 742
HpyAV CCTTC 2 cut(s) 1057, 1065
HpyCH4III ACNGT 1 cut(s) 1046
HpyCH4V TGCA 7 cut(s) 4, 185, 500, 524, 558, 1014, 1022
HpyF10VI GCNNNNNNNGC 1 cut(s) 564
HpyF3I CTNAG 4 cut(s) 328, 406, 602, 778
Hsp92II CATG 4 cut(s) 402, 472, 646, 850
HspAI GCGC 1 cut(s) 519
Kzo9I GATC 6 cut(s) 114, 349, 415, 457, 637, 943
LmnI GCTCC 1 cut(s) 689
Lsp1109I GCAGC 4 cut(s) 136, 508, 512, 809
LweI GCATC 4 cut(s) 826, 941, 1009, 1031
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 2 cut(s) 995, 1046
MalI GATC 6 cut(s) 116, 351, 417, 459, 639, 945
MboI GATC 6 cut(s) 114, 349, 415, 457, 637, 943
MboII GAAGA 7 cut(s) 65, 124, 315, 373, 799, 1072, 1108
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 560
MluCI AATT 5 cut(s) 25, 89, 106, 256, 1112
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 487
Mph1103I ATGCAT 1 cut(s) 1024
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 2 cut(s) 843, 972
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 2 cut(s) 300, 1004
MspR9I CCNGG 1 cut(s) 1005
Mva1269I GAATGC 1 cut(s) 981
MwoI GCNNNNNNNGC 1 cut(s) 564
NciI CCSGG 1 cut(s) 1005
NdeI CATATG 1 cut(s) 268
NdeII GATC 6 cut(s) 114, 349, 415, 457, 637, 943
NlaIII CATG 4 cut(s) 402, 472, 646, 850
NlaIV GGNNCC 2 cut(s) 351, 1009
NsiI ATGCAT 1 cut(s) 1024
NspI RCATGY 1 cut(s) 472
NspV TTCGAA 1 cut(s) 1058
PciI ACATGT 1 cut(s) 468
PctI GAATGC 1 cut(s) 981
PdmI GAANNNNTTC 1 cut(s) 177
PfeI GAWTC 7 cut(s) 178, 203, 215, 364, 650, 699, 1097
PflMI CCANNNNNTGG 2 cut(s) 145, 269
PfoI TCCNGGA 1 cut(s) 1003
PkrI GCNGC 5 cut(s) 151, 502, 523, 720, 799
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PscI ACATGT 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 351, 1009
PstI CTGCAG 2 cut(s) 187, 502
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 1 cut(s) 991
RsaNI GTAC 1 cut(s) 990
RseI CAYNNNNRTG 1 cut(s) 11
SaqAI TTAA 2 cut(s) 843, 972
SatI GCNGC 5 cut(s) 150, 501, 522, 719, 798
Sau3AI GATC 6 cut(s) 114, 349, 415, 457, 637, 943
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 1 cut(s) 1005
SduI GDGCHC 1 cut(s) 560
SetI ASST 9 cut(s) 298, 343, 398, 613, 658, 822, 879, 978, 1013
SfaNI GCATC 4 cut(s) 826, 941, 1009, 1031
SfcI CTRYAG 2 cut(s) 183, 498
SfuI TTCGAA 1 cut(s) 1058
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 5 cut(s) 25, 89, 106, 256, 1112
SsiI CCGC 1 cut(s) 719
SspI AATATT 2 cut(s) 235, 970
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 1003
TaaI ACNGT 1 cut(s) 1046
TaqI TCGA 4 cut(s) 86, 536, 1058, 1095
TasI AATT 5 cut(s) 25, 89, 106, 256, 1112
TatI WGTACW 1 cut(s) 989
TauI GCSGC 1 cut(s) 721
TfiI GAWTC 7 cut(s) 178, 203, 215, 364, 650, 699, 1097
Tru1I TTAA 2 cut(s) 843, 972
Tru9I TTAA 2 cut(s) 843, 972
TscAI CASTG 4 cut(s) 18, 192, 606, 756
TseI GCWGC 4 cut(s) 149, 500, 521, 797
TspDTI ATGAA 3 cut(s) 21, 65, 1086
TspRI CASTG 4 cut(s) 18, 192, 606, 756
Van91I CCANNNNNTGG 2 cut(s) 145, 269
VneI GTGCAC 1 cut(s) 556
XapI RAATTY 3 cut(s) 89, 106, 1112
XceI RCATGY 1 cut(s) 472
XmiI GTMKAC 2 cut(s) 632, 873
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.