Rh2AG123800

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000393
Physical Location & Seq
Reverse (-)
11263331 .. 11263699
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG123800.1

Sequence Viewer

Length: 369 bp
ATGGAACACATGTACTTTAAATTTGCTCCTTATGTTAATGTGGAGAAAAAATGGAACTGCATGCAGGAACTATATAGACAAGGAGCAAGAAGGATTGGAGTACTAAGCTTGCCACCAATTGGGTGTGTGCCGTCACAGAGGACATTGGGTGGAGGCATAGACGTCACAGGGTGTTCAAAGATCGCTAACCAAGCGGCAAGGCTCTTCAACTCCAAGCTCTCTTCCCAAATAGATTCCCTCAATAAGAAGCTTCCAGATGCAAGGCTTGTCTACTTTGATATCTACAACAATTTGCTCTCCCTCATCCAAAACCCTTCAACATATGGTAGCATCTTTATGCTGTTACTTCACAAAACCGAAATGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

122

Amino Acids

13.83

Weight (kDa)

9.41

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 22 - 97 1.7e-08 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 119
AccI GTMKAC 1 cut(s) 270
AciI CCGC 1 cut(s) 194
AcsI RAATTY 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 162
AdeI CACNNNGTG 1 cut(s) 171
AfaI GTAC 2 cut(s) 14, 102
AfiI CCNNNNNNNGG 1 cut(s) 119
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 3 cut(s) 177, 208, 318
AluBI AGCT 3 cut(s) 108, 217, 250
AluI AGCT 3 cut(s) 108, 217, 250
ApoI RAATTY 1 cut(s) 20
BceAI ACGGC 1 cut(s) 115
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmcAI AGTACT 1 cut(s) 102
BmsI GCATC 2 cut(s) 247, 339
BsaHI GRCGYC 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 119
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 1 cut(s) 194
BspQI GCTCTTC 1 cut(s) 209
BssMI GATC 1 cut(s) 180
BssNI GRCGYC 1 cut(s) 162
Bst6I CTCTTC 2 cut(s) 209, 226
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 62, 110
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNSI RCATGY 2 cut(s) 13, 64
BtsCI GGATG 1 cut(s) 303
Cac8I GCNNGC 2 cut(s) 62, 110
Csp6I GTAC 2 cut(s) 13, 101
CviAII CATG 2 cut(s) 10, 61
CviJI RGCY 5 cut(s) 108, 202, 217, 250, 265
CviKI_1 RGCY 5 cut(s) 108, 202, 217, 250, 265
CviQI GTAC 2 cut(s) 13, 101
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
DraI TTTAAA 1 cut(s) 19
DraIII CACNNNGTG 1 cut(s) 171
Eam1104I CTCTTC 2 cut(s) 209, 226
EarI CTCTTC 2 cut(s) 209, 226
Eco32I GATATC 1 cut(s) 280
EcoRV GATATC 1 cut(s) 280
FaeI CATG 2 cut(s) 13, 64
FaiI YATR 9 cut(s) 11, 33, 62, 73, 75, 158, 322, 324, 338
FatI CATG 2 cut(s) 9, 60
FauNDI CATATG 1 cut(s) 322
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 195
GluI GCNGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 2 cut(s) 13, 64
HindIII AAGCTT 2 cut(s) 106, 248
HinfI GANTC 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 271
Hpy188III TCNNGA 1 cut(s) 254
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 2 cut(s) 84, 324
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 60, 64, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 104
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 2 cut(s) 13, 64
Kzo9I GATC 1 cut(s) 180
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 2 cut(s) 31, 83
LpnPI CCDG 3 cut(s) 50, 153, 267
LweI GCATC 2 cut(s) 247, 339
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 3 cut(s) 132, 163, 342
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 2 cut(s) 196, 213
MfeI CAATTG 1 cut(s) 117
MluCI AATT 3 cut(s) 20, 117, 289
MnlI CCTC 4 cut(s) 132, 146, 248, 311
MseI TTAA 3 cut(s) 18, 36, 367
MslI CAYNNNNRTG 1 cut(s) 335
MunI CAATTG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeI CATATG 1 cut(s) 322
NdeII GATC 1 cut(s) 180
NlaIII CATG 2 cut(s) 13, 64
NmuCI GTSAC 2 cut(s) 132, 163
NspI RCATGY 2 cut(s) 13, 64
PaeI GCATGC 1 cut(s) 64
PciI ACATGT 1 cut(s) 9
PciSI GCTCTTC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 1 cut(s) 196
PscI ACATGT 1 cut(s) 9
RsaI GTAC 2 cut(s) 14, 102
RsaNI GTAC 2 cut(s) 13, 101
RseI CAYNNNNRTG 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 3 cut(s) 18, 36, 367
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 1 cut(s) 180
ScaI AGTACT 1 cut(s) 102
SetI ASST 4 cut(s) 110, 165, 219, 252
SfaNI GCATC 2 cut(s) 247, 339
SmiMI CAYNNNNRTG 1 cut(s) 335
SphI GCATGC 1 cut(s) 64
Sse9I AATT 3 cut(s) 20, 117, 289
SsiI CCGC 1 cut(s) 194
TaiI ACGT 1 cut(s) 165
TasI AATT 3 cut(s) 20, 117, 289
TatI WGTACW 2 cut(s) 12, 100
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 3 cut(s) 18, 36, 367
Tru9I TTAA 3 cut(s) 18, 36, 367
TseFI GTSAC 2 cut(s) 132, 163
Tsp45I GTSAC 2 cut(s) 132, 163
Van91I CCANNNNNTGG 1 cut(s) 119
XapI RAATTY 1 cut(s) 20
XceI RCATGY 2 cut(s) 13, 64
XmiI GTMKAC 1 cut(s) 270
ZraI GACGTC 1 cut(s) 163
ZrmI AGTACT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.