Rmu_sc0008940.1_g000006

hydrolase activity, acting on ester bonds

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008940.1
OG0000393
Physical Location & Seq
Reverse (-)
14142 .. 18010
3869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008940.1_g000006.1.cds

Sequence Viewer

Length: 591 bp
atgtggaggcactatgaaaatttgctttcgaagtgtttgaaagcagtattactatttgttcaagtccgagttctattagtatgtctgtgcacctcaaacgtagtagctgaagctggggaccgaccagctgaaatcaacagaatgtcgtcgccgttcgtaggggttttcgcctttggagattcggttcttgacacaggcaacaacaatgacctccctactgtagccagatgcaatttcccaccctatggaagagattttataggaggcatccctacgggaagatttagcaatgggaaagtttactccgacattatagtggaagccttgggtatcaagcatctcttgccagcataccttgacccaaacctacgctctgaagatctcccaactggtgtatgctttgcttctggcaattccggttatgatcctctaacaccatctctagtgcggcgtgaggtcgtggcgacgactatcgtagaggcaagggttgtggcagatcgggtcaggtggatggagacgctggatttgttgcatacgacatggcgtcttagagatgctgggcctggaccaagccagcttgatgggctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

196

Amino Acids

21.52

Weight (kDa)

5.91

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 245
AciI CCGC 1 cut(s) 448
AclWI GGATC 1 cut(s) 419
AcsI RAATTY 1 cut(s) 19
AcuI CTGAAG 2 cut(s) 129, 396
AcyI GRCGYC 1 cut(s) 544
AfiI CCNNNNNNNGG 2 cut(s) 158, 245
AgsI TTSAA 2 cut(s) 40, 62
AhdI GACNNNNNGTC 1 cut(s) 543
AjnI CCWGG 1 cut(s) 562
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 4 cut(s) 107, 113, 128, 577
AluI AGCT 4 cut(s) 107, 113, 128, 577
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 509
Alw44I GTGCAC 1 cut(s) 88
AlwI GGATC 1 cut(s) 419
AoxI GGCC 1 cut(s) 560
ApaLI GTGCAC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 19
ArsI GACNNNNNNTTYG 2 cut(s) 508, 540
AspS9I GGNCC 3 cut(s) 118, 560, 566
AsuII TTCGAA 1 cut(s) 29
AvaII GGWCC 2 cut(s) 118, 566
BaeGI GKGCMC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 92
BccI CCATC 3 cut(s) 445, 505, 575
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 564
BcoDI GTCTC 1 cut(s) 509
BfaI CTAG 1 cut(s) 443
BfmI CTRYAG 1 cut(s) 219
BglII AGATCT 1 cut(s) 379
BisI GCNGC 1 cut(s) 449
BlsI GCNGC 1 cut(s) 450
Bme1390I CCNGG 1 cut(s) 564
Bme18I GGWCC 2 cut(s) 118, 566
BmeRI GACNNNNNGTC 1 cut(s) 543
BmgT120I GGNCC 3 cut(s) 118, 560, 566
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 564
BmsI GCATC 4 cut(s) 218, 276, 346, 544
Bpu14I TTCGAA 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 544
BsaJI CCNNGG 1 cut(s) 324
BsaWI WCCGGW 1 cut(s) 416
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 245
Bse1I ACTGG 1 cut(s) 394
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 564
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 2 cut(s) 267, 516
BseLI CCNNNNNNNGG 2 cut(s) 158, 245
BseMI GCAATG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 394
BseSI GKGCMC 1 cut(s) 92
BseYI CCCAGC 2 cut(s) 113, 557
BshFI GGCC 1 cut(s) 562
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 417
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 158, 245
BsmAI GTCTC 1 cut(s) 509
BsmBI CGTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 562
Bsp119I TTCGAA 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 92, 588
Bsp143I GATC 3 cut(s) 379, 424, 496
BspACI CCGC 1 cut(s) 448
BspANI GGCC 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 119
BspPI GGATC 1 cut(s) 419
BspT104I TTCGAA 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 295
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 3 cut(s) 379, 424, 496
BssNI GRCGYC 1 cut(s) 544
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 244
BstACI GRCGYC 1 cut(s) 544
BstAPI GCANNNNNTGC 1 cut(s) 343
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 348, 575
BstDEI CTNAG 1 cut(s) 548
BstF5I GGATG 2 cut(s) 267, 516
BstKTI GATC 3 cut(s) 382, 427, 499
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 3 cut(s) 379, 424, 496
BstMWI GCNNNNNNNGC 2 cut(s) 343, 583
BstNI CCWGG 1 cut(s) 564
BstSCI CCNGG 1 cut(s) 562
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 379
BstXI CCANNNNNNTGG 1 cut(s) 581
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 1 cut(s) 562
BtsCI GGATG 2 cut(s) 267, 516
Cac8I GCNNGC 2 cut(s) 348, 575
Cfr13I GGNCC 3 cut(s) 118, 560, 566
CseI GACGC 2 cut(s) 526, 533
CspCI CAANNNNNGTGG 2 cut(s) 471, 506
CviAII CATG 1 cut(s) 540
CviJI RGCY 9 cut(s) 107, 113, 128, 224, 323, 562, 573, 577, 586
CviKI_1 RGCY 9 cut(s) 107, 113, 128, 224, 323, 562, 573, 577, 586
DdeI CTNAG 1 cut(s) 548
DpnI GATC 3 cut(s) 381, 426, 498
DpnII GATC 3 cut(s) 379, 424, 496
DriI GACNNNNNGTC 1 cut(s) 543
Eam1104I CTCTTC 1 cut(s) 244
Eam1105I GACNNNNNGTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 588
Eco47I GGWCC 2 cut(s) 118, 566
Eco57I CTGAAG 2 cut(s) 129, 396
EcoRII CCWGG 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 324
Esp3I CGTCTC 1 cut(s) 509
FaeI CATG 1 cut(s) 543
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 131
FatI CATG 1 cut(s) 539
Fnu4HI GCNGC 1 cut(s) 449
FokI GGATG 2 cut(s) 254, 523
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 1 cut(s) 449
FspBI CTAG 1 cut(s) 443
GluI GCNGC 1 cut(s) 449
GsaI CCCAGC 2 cut(s) 117, 561
HaeIII GGCC 1 cut(s) 562
HapII CCGG 1 cut(s) 417
HgaI GACGC 2 cut(s) 526, 533
Hin1I GRCGYC 1 cut(s) 544
Hin1II CATG 1 cut(s) 543
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 417
Hpy166II GTNNAC 2 cut(s) 90, 301
Hpy188I TCNGA 4 cut(s) 68, 307, 376, 590
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 2 cut(s) 90, 301
Hpy99I CGWCG 2 cut(s) 151, 469
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 90, 231, 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 343, 583
HpyF3I CTNAG 1 cut(s) 548
HpySE526I ACGT 1 cut(s) 99
Hsp92I GRCGYC 1 cut(s) 544
Hsp92II CATG 1 cut(s) 543
Kzo9I GATC 3 cut(s) 379, 424, 496
LweI GCATC 4 cut(s) 218, 276, 346, 544
MaeI CTAG 1 cut(s) 443
MaeII ACGT 1 cut(s) 99
MalI GATC 3 cut(s) 381, 426, 498
MboI GATC 3 cut(s) 379, 424, 496
MboII GAAGA 3 cut(s) 261, 291, 389
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 2 cut(s) 92, 588
MluCI AATT 3 cut(s) 19, 232, 412
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 6 cut(s) 103, 221, 257, 438, 448, 472
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 417
MspR9I CCNGG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 2 cut(s) 343, 583
NdeII GATC 3 cut(s) 379, 424, 496
NlaIII CATG 1 cut(s) 543
NlaIV GGNNCC 1 cut(s) 119
NspV TTCGAA 1 cut(s) 29
PfeI GAWTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 245
PkrI GCNGC 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 562
PspFI CCCAGC 2 cut(s) 113, 557
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 3 cut(s) 118, 560, 566
PsuI RGATCY 1 cut(s) 379
PvuII CAGCTG 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 314
SatI GCNGC 1 cut(s) 449
Sau3AI GATC 3 cut(s) 379, 424, 496
Sau96I GGNCC 3 cut(s) 118, 560, 566
ScrFI CCNGG 1 cut(s) 564
SduI GDGCHC 2 cut(s) 92, 588
SfaNI GCATC 4 cut(s) 218, 276, 346, 544
SfcI CTRYAG 1 cut(s) 219
SfuI TTCGAA 1 cut(s) 29
SinI GGWCC 2 cut(s) 118, 566
SmiMI CAYNNNNRTG 1 cut(s) 314
Sse9I AATT 3 cut(s) 19, 232, 412
SsiI CCGC 1 cut(s) 448
SspMI CTAG 1 cut(s) 443
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 29
TaqII GACCGA 1 cut(s) 135
TasI AATT 3 cut(s) 19, 232, 412
TauI GCSGC 1 cut(s) 451
TfiI GAWTC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 30
Van91I CCANNNNNTGG 1 cut(s) 245
VneI GTGCAC 1 cut(s) 88
VpaK11BI GGWCC 2 cut(s) 118, 566
XapI RAATTY 1 cut(s) 19
XspI CTAG 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.