RchiOBHm_Chr2g0098881

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000393
Physical Location & Seq
Forward (+)
11160883 .. 11161328
446 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47364

Sequence Viewer

Length: 246 bp
ATGAAAGAACAGCCACTCTACTACTTCCTGCTTGAATTAGCTTCAAACTTCTTTCAGGAACTTTATGCACTGGGAGCAAGAGTGATTGGAGTAGCAAGTATGCCGCCAATTGGGTGTGTGCCAGCACAGAGAACACTCGATGGAGGCATAGAGAGAGTCTGCGATGAGACTGAGAACCAAGCAGCAATCCTCTTCAACTCGAAGCTCTCCACCCTTATAGACTCCCTCAATAAGAGACTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

81

Amino Acids

8.99

Weight (kDa)

4.89

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 3 cut(s) 35, 45, 196
AluBI AGCT 2 cut(s) 41, 205
AluI AGCT 2 cut(s) 41, 205
Alw26I GTCTC 2 cut(s) 161, 229
ApeKI GCWGC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 134
BcoDI GTCTC 2 cut(s) 161, 229
BisI GCNGC 2 cut(s) 104, 183
BlsI GCNGC 2 cut(s) 105, 184
BmrI ACTGGG 1 cut(s) 80
BmuI ACTGGG 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 161, 229
BspACI CCGC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 163
BsrI ACTGG 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 171
BstMAI GTCTC 2 cut(s) 161, 229
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 194
BtgZI GCGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 123
CviJI RGCY 3 cut(s) 13, 41, 205
CviKI_1 RGCY 3 cut(s) 13, 41, 205
DdeI CTNAG 1 cut(s) 171
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
FaiI YATR 5 cut(s) 66, 101, 149, 218, 244
Fnu4HI GCNGC 2 cut(s) 104, 183
Fsp4HI GCNGC 2 cut(s) 104, 183
GluI GCNGC 2 cut(s) 104, 183
HinfI GANTC 2 cut(s) 156, 221
Hpy188III TCNNGA 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 171
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 4 cut(s) 41, 41, 56, 135
Lsp1109I GCAGC 1 cut(s) 194
MboII GAAGA 1 cut(s) 184
MfeI CAATTG 1 cut(s) 108
MluCI AATT 2 cut(s) 35, 108
MlyI GAGTC 2 cut(s) 165, 215
MnlI CCTC 3 cut(s) 137, 200, 236
MunI CAATTG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 74
PkrI GCNGC 2 cut(s) 105, 184
PleI GAGTC 2 cut(s) 164, 215
PpsI GAGTC 2 cut(s) 164, 215
SatI GCNGC 2 cut(s) 104, 183
SchI GAGTC 2 cut(s) 165, 215
SetI ASST 2 cut(s) 43, 207
Sse9I AATT 2 cut(s) 35, 108
SsiI CCGC 1 cut(s) 104
TaqI TCGA 2 cut(s) 138, 200
TasI AATT 2 cut(s) 35, 108
TauI GCSGC 1 cut(s) 106
TscAI CASTG 1 cut(s) 75
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.