RchiOBHm_Chr2g0098861

GDSL esterase lipase EXL3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000393
Physical Location & Seq
Forward (+)
11148880 .. 11150374
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47362

Sequence Viewer

Length: 1086 bp
ATGGTTTTTCTCTCCCAAATACTTGTTGCATCATCATCTGTCAAAATTTTCTCAATCATTGCAGTCATTTTCCTCTCCCATTATGTTGCTGCAGTAACACCAGCCACAAATAAAACAAATAGAGCAGTTTTTACTTTCGGAGATTCAACAATGGACACGGGCAATAATGACTACATCATTTCTATAGCCAAAAGCAATTTCCCACCCTATGGGAGAGACTTTGTGGGAGGAAAGCCTACCGGAAGATTTAGCAATGGAAAAGTCCCCTCAGATTTTGTTGCTGAAATATTTGGAGTGAAGAAGATTTTGCCGGCTTATCTGGATCCGAAATTGCAGCTTCAAGACCTACTTACTGGTGTATGTTTTGCCTCAGCAGGATCAGGATATGACCCTCTCACTGCCAAATTACTTTCTGTCTTGTCACTACCAGATCAATTAGACTTGTTCAAAAAATACAAAAGCAAGATAACTGCAGCAGTTGGGACTGAAAGAACAGCCACTATACTGTCGAAAAGCATTTCCTTTCTTTCCATGGGAAGCAATGACCTTGCAATTAATTATTTTTCTACACCACTGAGGAGCCCTTACTATGACATTCCAGCTTATACAGATCTCATGATTGAATCAGCTTCAAATTTCTTGCAGGAACTTTATGCAGTGGGAGCAAGAGTGATCGGAGTAGTATGTATACCATCAATTGGGTGTTTGCCAGCACAGAGAACACTTAATGGAGGTATAAAGAGAGCGTGCTACGAAACCGGGAATCAAGCAGCAATCCTTTTCAACTCGAAGCTCTCCCACCTTATAGATTCCCTCAATAAGAGACTTCCAGAAGCACACCTCATGTACATTGATAACTACAGCCCTTTACTTTCCCTGATCCAAAACCCTGCTCAATATGGATTTGAAGTGGTGGATAAAGGATGCTGTGGAACAGGAGATCTTGAATTTGGCCCTCTGTGTAACAGAGACACCCCGGGTACTTGTAATGATGTGTCCAAGTACATATTCTGGGATAGCTTTCATCCTACAGAGAAGGCATACAGGATCCTCACCTCTATTAGTTCAAAGGAAGTTAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

361

Amino Acids

39.36

Weight (kDa)

8.29

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 43 - 351 4.1e-31 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000393)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G20120 AT1G20132
fragaria_vesca FvH4_1g11330 FvH4_1g11340 FvH4_1g11341 FvH4_1g11342 FvH4_1g11390 FvH4_1g11390 FvH4_2g38111 FvH4_2g38111 FvH4_2g38111 FvH4_5g34670
malus_domestica MD02G1126900.v1.1 MD02G1127000.v1.1 MD02G1127100.v1.1 MD15G1008700.v1.1 MD15G1241600.v1.1 MD15G1241700.v1.1
prunus_persica Prupe.1G361600_v2.0.a1 Prupe.1G361700_v2.0.a1 Prupe.7G172300_v2.0.a1
pyrus_communis pycom02g09900 pycom02g09910 pycom02g09920 pycom15g00720 pycom15g21320
rosa_chinensis RchiOBHm_Chr2g0098851 RchiOBHm_Chr2g0098861 RchiOBHm_Chr2g0098871 RchiOBHm_Chr2g0098881 RchiOBHm_Chr2g0098921 RchiOBHm_Chr2g0130201 RchiOBHm_Chr6g0303431 RchiOBHm_Chr7g0235831
rosa_laevigata RLG00000001135 RLG00000011086 RLG00000016830 RLG00000016834 RLG00000019130
rosa_multiflora Rmu_co8160810.1_g000001 Rmu_co8282213.1_g000001 Rmu_co8476509.1_g000001 Rmu_sc0007686.1_g000001 Rmu_sc0008564.1_g000006 Rmu_sc0008564.1_g000009 Rmu_sc0008564.1_g000011 Rmu_sc0008564.1_g000016 Rmu_sc0008940.1_g000006 Rmu_sc0008941.1_g000009 Rmu_sc0010460.1_g000019 Rmu_sc0027015.1_g000001 Rmu_sc0027115.1_g000001 Rmu_sc0039572.1_g000001 Rmu_ssc0000114.1_g000053
rosa_roxburghii Rroxscaffold_2G00143590 Rroxscaffold_2G00143660 Rroxscaffold_2G00143670 Rroxscaffold_2G00143680 Rroxscaffold_7G00164780
rosa_rugosa Rorug02G0075000 Rorug02G0075100 Rorug02G0075200 Rorug02G0291100 Rorug02G0291200 Rorug02G0291300
rosa_samantha Rh2AG123000 Rh2AG123100 Rh2AG123200 Rh2AG123400 Rh2AG123800 Rh2AG123900 Rh2AG124200 Rh2AG124400 Rh2AG343000 Rh2BG126600 Rh2BG126700 Rh2BG126900 Rh2BG127100 Rh2BG127400 Rh2BG127600 Rh2BG350800 Rh2CG127600 Rh2CG127700 Rh2CG127800 Rh2CG128000 Rh2CG128300 Rh2CG128500 Rh2CG330100 Rh6AG435600 Rh6CG447600 Rh6DG434300 Rh7AG447900 Rh7BG420100 Rh7CG468400
rosa_wichuraiana Rw0G004290 Rw2G009510 Rw2G009550 Rw2G027630 Rw2G027650 Rw6G037700 Rw7G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 209, 698
AccI GTMKAC 1 cut(s) 688
AclWI GGATC 6 cut(s) 317, 330, 385, 874, 1042, 1055
AcsI RAATTY 3 cut(s) 45, 634, 947
AfaI GTAC 3 cut(s) 848, 982, 1004
AfiI CCNNNNNNNGG 2 cut(s) 209, 698
AgsI TTSAA 9 cut(s) 147, 341, 448, 623, 633, 784, 908, 947, 1068
AjuI GAANNNNNNNTTGG 4 cut(s) 182, 214, 992, 1024
AluBI AGCT 5 cut(s) 337, 602, 629, 793, 1020
AluI AGCT 5 cut(s) 337, 602, 629, 793, 1020
Alw26I GTCTC 3 cut(s) 210, 817, 963
AlwI GGATC 6 cut(s) 317, 330, 385, 874, 1042, 1055
Ama87I CYCGRG 1 cut(s) 976
AoxI GGCC 1 cut(s) 952
ApeKI GCWGC 4 cut(s) 89, 334, 473, 770
ApoI RAATTY 3 cut(s) 45, 634, 947
AseI ATTAAT 1 cut(s) 555
AspS9I GGNCC 1 cut(s) 953
AsuC2I CCSGG 3 cut(s) 760, 977, 978
AsuHPI GGTGA 1 cut(s) 1045
AvaI CYCGRG 1 cut(s) 976
BamHI GGATCC 2 cut(s) 322, 1047
BanII GRGCYC 1 cut(s) 584
BbvCI CCTCAGC 1 cut(s) 370
BbvI GCAGC 4 cut(s) 76, 346, 485, 782
BccI CCATC 1 cut(s) 700
BcnI CCSGG 3 cut(s) 760, 977, 978
BcoDI GTCTC 3 cut(s) 210, 817, 963
BfmI CTRYAG 5 cut(s) 90, 183, 471, 859, 1029
BglII AGATCT 2 cut(s) 610, 940
BisI GCNGC 4 cut(s) 90, 335, 474, 771
BlsI GCNGC 4 cut(s) 91, 336, 475, 772
Bme1390I CCNGG 3 cut(s) 760, 977, 978
BmeT110I CYCGRG 1 cut(s) 976
BmgT120I GGNCC 1 cut(s) 953
BmiI GGNNCC 3 cut(s) 324, 581, 1049
BmrFI CCNGG 3 cut(s) 760, 977, 978
BmsI GCATC 2 cut(s) 38, 914
Bpu10I CCTNAGC 1 cut(s) 370
BpuMI CCSGG 3 cut(s) 760, 977, 978
BsaJI CCNNGG 3 cut(s) 531, 975, 976
BsaWI WCCGGW 1 cut(s) 239
BsaXI ACNNNNNCTCC 2 cut(s) 654, 684
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 698
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 358
Bse3DI GCAATG 3 cut(s) 57, 259, 547
BseDI CCNNGG 3 cut(s) 531, 975, 976
BseGI GGATG 2 cut(s) 929, 1024
BseLI CCNNNNNNNGG 2 cut(s) 209, 698
BseMI GCAATG 3 cut(s) 57, 259, 547
BseMII CTCAG 3 cut(s) 282, 384, 566
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 1 cut(s) 592
BseXI GCAGC 4 cut(s) 76, 346, 485, 782
BshFI GGCC 1 cut(s) 954
BsiHKCI CYCGRG 1 cut(s) 976
BsiSI CCGG 4 cut(s) 240, 311, 759, 977
BslFI GGGAC 2 cut(s) 248, 496
BslI CCNNNNNNNGG 2 cut(s) 209, 698
BsmAI GTCTC 3 cut(s) 210, 817, 963
BsmFI GGGAC 2 cut(s) 248, 496
BsnI GGCC 1 cut(s) 954
BsoBI CYCGRG 1 cut(s) 976
Bsp1286I GDGCHC 1 cut(s) 584
Bsp1407I TGTACA 1 cut(s) 846
Bsp143I GATC 8 cut(s) 322, 377, 430, 610, 672, 879, 940, 1047
Bsp19I CCATGG 1 cut(s) 531
BspANI GGCC 1 cut(s) 954
BspCNI CTCAG 3 cut(s) 281, 383, 567
BspHI TCATGA 1 cut(s) 615
BspLI GGNNCC 3 cut(s) 324, 581, 1049
BspMAI CTGCAG 2 cut(s) 94, 475
BspPI GGATC 6 cut(s) 317, 330, 385, 874, 1042, 1055
BsrDI GCAATG 3 cut(s) 57, 259, 547
BsrFI RCCGGY 1 cut(s) 310
BsrGI TGTACA 1 cut(s) 846
BsrI ACTGG 1 cut(s) 358
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 3 cut(s) 531, 975, 976
BssMI GATC 8 cut(s) 322, 377, 430, 610, 672, 879, 940, 1047
BssNAI GTATAC 1 cut(s) 689
BssT1I CCWWGG 1 cut(s) 531
Bst1107I GTATAC 1 cut(s) 689
Bst4CI ACNGT 1 cut(s) 507
BstAUI TGTACA 1 cut(s) 846
BstC8I GCNNGC 3 cut(s) 312, 711, 748
BstDEI CTNAG 3 cut(s) 268, 370, 575
BstDSI CCRYGG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 929, 1024
BstKTI GATC 8 cut(s) 325, 380, 433, 613, 675, 882, 943, 1050
BstMAI GTCTC 3 cut(s) 210, 817, 963
BstMBI GATC 8 cut(s) 322, 377, 430, 610, 672, 879, 940, 1047
BstMWI GCNNNNNNNGC 1 cut(s) 662
BstSCI CCNGG 3 cut(s) 758, 975, 976
BstSFI CTRYAG 5 cut(s) 90, 183, 471, 859, 1029
BstV1I GCAGC 4 cut(s) 76, 346, 485, 782
BstX2I RGATCY 4 cut(s) 322, 610, 940, 1047
BstYI RGATCY 4 cut(s) 322, 610, 940, 1047
BstZ17I GTATAC 1 cut(s) 689
BsuRI GGCC 1 cut(s) 954
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 2 cut(s) 929, 1024
BtsI GCAGTG 2 cut(s) 396, 663
BtsIMutI CAGTG 3 cut(s) 396, 572, 663
Cac8I GCNNGC 3 cut(s) 312, 711, 748
CciI TCATGA 1 cut(s) 615
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 953
Cfr9I CCCGGG 1 cut(s) 976
Csp6I GTAC 3 cut(s) 847, 981, 1003
CviAII CATG 3 cut(s) 532, 616, 844
CviQI GTAC 3 cut(s) 847, 981, 1003
DdeI CTNAG 3 cut(s) 268, 370, 575
DpnI GATC 8 cut(s) 324, 379, 432, 612, 674, 881, 942, 1049
DpnII GATC 8 cut(s) 322, 377, 430, 610, 672, 879, 940, 1047
Eco130I CCWWGG 1 cut(s) 531
Eco24I GRGCYC 1 cut(s) 584
Eco88I CYCGRG 1 cut(s) 976
EcoT14I CCWWGG 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 584
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 3 cut(s) 535, 619, 847
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 2 cut(s) 248, 496
FatI CATG 3 cut(s) 531, 615, 843
FblI GTMKAC 1 cut(s) 688
Fnu4HI GCNGC 4 cut(s) 90, 335, 474, 771
FokI GGATG 2 cut(s) 936, 1011
FriOI GRGCYC 1 cut(s) 584
Fsp4HI GCNGC 4 cut(s) 90, 335, 474, 771
GluI GCNGC 4 cut(s) 90, 335, 474, 771
HaeIII GGCC 1 cut(s) 954
HapII CCGG 4 cut(s) 240, 311, 759, 977
Hin1II CATG 3 cut(s) 535, 619, 847
HinfI GANTC 4 cut(s) 143, 623, 763, 809
HpaII CCGG 4 cut(s) 240, 311, 759, 977
HphI GGTGA 1 cut(s) 1045
Hpy166II GTNNAC 1 cut(s) 689
Hpy188I TCNGA 4 cut(s) 140, 271, 327, 677
Hpy188III TCNNGA 6 cut(s) 320, 341, 381, 616, 830, 944
Hpy8I GTNNAC 1 cut(s) 689
HpyAV CCTTC 1 cut(s) 1030
HpyCH4III ACNGT 1 cut(s) 507
HpyCH4V TGCA 8 cut(s) 29, 62, 92, 334, 473, 551, 643, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 662
HpyF3I CTNAG 3 cut(s) 268, 370, 575
Hsp92II CATG 3 cut(s) 535, 619, 847
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
Kzo9I GATC 8 cut(s) 322, 377, 430, 610, 672, 879, 940, 1047
LmnI GCTCC 2 cut(s) 579, 662
Lsp1109I GCAGC 4 cut(s) 76, 346, 485, 782
LweI GCATC 2 cut(s) 38, 914
MaeIII GTNAC 3 cut(s) 94, 420, 962
MalI GATC 8 cut(s) 324, 379, 432, 612, 674, 881, 942, 1049
MboI GATC 8 cut(s) 322, 377, 430, 610, 672, 879, 940, 1047
MboII GAAGA 3 cut(s) 255, 310, 313
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 4 cut(s) 322, 610, 940, 1047
MhlI GDGCHC 1 cut(s) 584
MroNI GCCGGC 1 cut(s) 310
MseI TTAA 3 cut(s) 555, 726, 1077
MspI CCGG 4 cut(s) 240, 311, 759, 977
MspR9I CCNGG 3 cut(s) 760, 977, 978
MunI CAATTG 1 cut(s) 696
MwoI GCNNNNNNNGC 1 cut(s) 662
NaeI GCCGGC 1 cut(s) 312
NciI CCSGG 3 cut(s) 760, 977, 978
NcoI CCATGG 1 cut(s) 531
NdeII GATC 8 cut(s) 322, 377, 430, 610, 672, 879, 940, 1047
NgoMIV GCCGGC 1 cut(s) 310
NlaIII CATG 3 cut(s) 535, 619, 847
NlaIV GGNNCC 3 cut(s) 324, 581, 1049
NmuCI GTSAC 1 cut(s) 420
PagI TCATGA 1 cut(s) 615
PdiI GCCGGC 1 cut(s) 312
PfeI GAWTC 4 cut(s) 143, 623, 763, 809
PflMI CCANNNNNTGG 2 cut(s) 209, 698
PkrI GCNGC 4 cut(s) 91, 336, 475, 772
PshBI ATTAAT 1 cut(s) 555
PspN4I GGNNCC 3 cut(s) 324, 581, 1049
PspPI GGNCC 1 cut(s) 953
PstI CTGCAG 2 cut(s) 94, 475
PsuI RGATCY 4 cut(s) 322, 610, 940, 1047
RsaI GTAC 3 cut(s) 848, 982, 1004
RsaNI GTAC 3 cut(s) 847, 981, 1003
SaqAI TTAA 3 cut(s) 555, 726, 1077
SatI GCNGC 4 cut(s) 90, 335, 474, 771
Sau3AI GATC 8 cut(s) 322, 377, 430, 610, 672, 879, 940, 1047
Sau96I GGNCC 1 cut(s) 953
ScrFI CCNGG 3 cut(s) 760, 977, 978
SduI GDGCHC 1 cut(s) 584
SfaNI GCATC 2 cut(s) 38, 914
SfcI CTRYAG 5 cut(s) 90, 183, 471, 859, 1029
SmaI CCCGGG 1 cut(s) 978
SspI AATATT 1 cut(s) 288
StyD4I CCNGG 3 cut(s) 758, 975, 976
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 1 cut(s) 507
TaqI TCGA 2 cut(s) 509, 788
TatI WGTACW 2 cut(s) 846, 1002
TfiI GAWTC 4 cut(s) 143, 623, 763, 809
Tru1I TTAA 3 cut(s) 555, 726, 1077
Tru9I TTAA 3 cut(s) 555, 726, 1077
TscAI CASTG 3 cut(s) 403, 579, 663
TseFI GTSAC 1 cut(s) 420
TseI GCWGC 4 cut(s) 89, 334, 473, 770
Tsp45I GTSAC 1 cut(s) 420
TspDTI ATGAA 1 cut(s) 1013
TspMI CCCGGG 1 cut(s) 976
TspRI CASTG 3 cut(s) 403, 579, 663
Van91I CCANNNNNTGG 2 cut(s) 209, 698
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 3 cut(s) 45, 634, 947
XmaI CCCGGG 1 cut(s) 976
XmiI GTMKAC 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.