Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

25650839 .. 25654862

Gene Structure 4024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0271300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGGCTAGCTCTGGGTCACGGTGTCCGCCGTTTGACTTTTCCGGCAAGTACTACGACGTCGTGTCTGGAGATGGCTGTGGGAGGCAAAGCAGCTTCTTTGAAGGGAAGGCAGTCCTCAATCAGAGCGTTGGATATTCTGTTATTCTTGGCTTTGGAGCCTTCTTTGCTGTCTTCACATCTTTCCTGGTATGGCTGGAGAAGCGGTATGTTGGTTCGAAGCACACATCCGAATGGTTCAACACTGCCGGAAGAAATGTTAAAACAGGGCTTATAGCTAGTGTGATTGTATCTCAGTGGACCTGGGCAGCTACAATTTTACAAAGTTCAAATGTTGCTTGGCAGTATGGAGTAAGTGGCCCTTTCTGGTATGCTAGCGGAGCGACTATTCAGGTACTCTTGTTTGGTATAATGGCTATAGAGATCAAGAGAAAGGCTCCTCATGCTCACACTGTATGCGAAATTGTAAAAGCTCGCTGGGGCACGGCCGCACACATAGTCTTCCTCAGTTTCTGCTTTTTGACAAATATTATTGTAACGGCAATGCTGCTGCTCGGTGGTTCTGCTGTTGTAAATGCACTTACCGGAGTAAACATCTATGCTGCTAGCTTCCTGATACCTCTTGGTGTAATTGTCTACACTTTAGCTGGAGGTCTAAAAGCCACATTCTTGGCAAGCTATATACATTCTGTTATAGTTCATGTGGTCCTAGTCATATTTGTATACCTTGTATATACGGCAAGCAATGAGCTTGGTAGCCCCAGAGTTGTCTATGGCCATCTGGTAGAGGTAGCAAGTAAATCAAGAATCTGTCAGGAGCCAATTTCTCATCCTGGGCAGTCTTGTGGTCCTGTTGGTGGGAATTACAAAGGGTCTTACCTAACAATGCTGAGTTCCGGAGGGCTAGTCTTCGGGATTATCAACATTGTTGGAAACTTTGGCACTGTTTTTGTTGACAATGGATATTGGGTAAGCGCCATAGCTGCACGGCCGTCATCAACTCACAAGGGTTACTTGTTAGGTGGGCTTGTCTGGTTTGCAGTCCCATTCTCTTTGGCAACATCACTAGGTCTGGGAGCACTGGCCCTTGACTTACCGATAACAGCAAGTGAAGCAAGTCGTGGTCTTGTTCCTCCGGCCACAGCTATAGCTTTGATGGGAAAAGGAGGATCAGTTCTTCTTCTTACTATGCTCTTCATGGCAGTGACATCTGCTGGTTCTTCAGAGCTTATAGCAGTATCCTCGTTATGTACATATGATATCTACCGCACATACATAGATCCAGATGCAACTGGAAAGACAATCCTCAAGGTATCTAGGGCTGTCATCCTTGGTTTTGGATGCTTTATGGGGTTGTTGGCAGTGATACTAAACAAGGCAGGAGTTTCATTGGGTTGGATGTATCTGGCAATGGGAGTGCTCATTGGCTCTGCAGTGCTTCCCATTGCTTTTATGCTTCTGTGGAGAAAGGCAAATGCAATTGGAGCAATTCTAGGAGCAACCATTGGTTGTCTTCTTGGGATCATCACTTGGCTATCGGTTGCGAAAATTGAGTATGGCCGAGTGAATCTTGACACAACAGGCAGGAATGCACCAATGCTTGCTGGAAACCTTGTCTCTATAATTACTGGTGGCGCTATACATGCTGTCTGTAGCTTCGTGTCACCGCAAAACTACGATTGGGGCACAACTAAGCAGATCACTGTGGTTGAGAAGGAAAAGAGTGAGCTGCCAGCCGAAGAGTACAAGGAGGAGAAATTATTGAGAGCAAAAGCATGGATAGTGAAATGGGGTGTTGGATTTACTTTTGTGATTGTTTTGTTGTGGCCTCTTCTAAGTCTTCCAGCAGGGGATTTTAGTATAGGGTACTTCACATTCTGGGCAGTGATTGCAATAGCATGGGGTACAATTGGTTCCATTGCCATCATTGCTTTACCGGTATTTGAGAGCTGGGAAACGATCCAGAGTGTCCTTCTGGGCATGTTTACAAATGACAGGCTCATGGAAAAGGTTGAAGAAATGAACTTGAGACTGCGGACAATCATGTTGGCTATACCAGAAGCAGAGAGAATTTACTTGCTTGAGAAGGAGAAGGCTAAGAAGAAAGAACCATTAGAGCAAGTGCAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

709

Amino Acids

76.24

Weight (kDa)

8.93

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSF	PF00474	80 - 502	8.6e-19	Sodium:solute symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AccI	GTMKAC	2 cut(s)	633, 720
AccIII	TCCGGA	1 cut(s)	893
AciI	CCGC	7 cut(s)	26, 202, 375, 486, 1264, 1664, 2032
AclWI	GGATC	4 cut(s)	1174, 1271, 1526, 1951
AcoI	YGGCCR	5 cut(s)	483, 772, 986, 1134, 1555
AcsI	RAATTY	1 cut(s)	2067
AcuI	CTGAAG	1 cut(s)	1203
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	6 cut(s)	50, 393, 1249, 1742, 1865, 1903
AfiI	CCNNNNNNNGG	1 cut(s)	854
AgeI	ACCGGT	1 cut(s)	1933
AgsI	TTSAA	4 cut(s)	101, 238, 327, 2012
AhdI	GACNNNNNGTC	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	183, 299, 829
AloI	GAACNNNNNNTCC	2 cut(s)	1155, 1187
Alw21I	GWGCWC	2 cut(s)	1078, 1419
Alw26I	GTCTC	2 cut(s)	1618, 2020
AlwI	GGATC	4 cut(s)	1174, 1271, 1526, 1951
AlwNI	CAGNNNCTG	1 cut(s)	510
Aor13HI	TCCGGA	1 cut(s)	893
AoxI	GGCC	8 cut(s)	355, 483, 772, 986, 1080, 1134, 1555, 1823
ApeKI	GCWGC	7 cut(s)	90, 305, 544, 547, 599, 980, 1726
ApoI	RAATTY	1 cut(s)	2067
AsiGI	ACCGGT	1 cut(s)	1933
AspLEI	GCGC	2 cut(s)	974, 1634
AspS9I	GGNCC	5 cut(s)	297, 356, 703, 845, 1081
AsuHPI	GGTGA	1 cut(s)	1653
AsuII	TTCGAA	1 cut(s)	215
AsuNHI	GCTAGC	3 cut(s)	5, 371, 602
AvaII	GGWCC	3 cut(s)	297, 703, 845
BaeGI	GKGCMC	2 cut(s)	482, 1685
BaeI	ACNNNNGTAYC	2 cut(s)	383, 416
BalI	TGGCCA	1 cut(s)	774
BbsI	GAAGAC	5 cut(s)	163, 490, 898, 1502, 1829
Bbv12I	GWGCWC	2 cut(s)	1078, 1419
BbvI	GCAGC	7 cut(s)	102, 317, 531, 534, 586, 967, 1713
BccI	CCATC	4 cut(s)	65, 783, 1147, 1928
BceAI	ACGGC	6 cut(s)	13, 498, 552, 750, 973, 1001
BcgI	CGANNNNNNTGC	2 cut(s)	1221, 1255
BciT130I	CCWGG	3 cut(s)	185, 301, 831
BciVI	GTATCC	1 cut(s)	1246
BcoDI	GTCTC	2 cut(s)	1618, 2020
BfaI	CTAG	9 cut(s)	6, 276, 372, 603, 707, 902, 1064, 1314, 1490
BfmI	CTRYAG	4 cut(s)	414, 1143, 1428, 1648
BfoI	RGCGCY	2 cut(s)	975, 1635
BfuI	GTATCC	1 cut(s)	1246
BisI	GCNGC	8 cut(s)	91, 306, 486, 545, 548, 600, 981, 1727
BlsI	GCNGC	8 cut(s)	92, 307, 487, 546, 549, 601, 982, 1728
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	3 cut(s)	185, 301, 831
Bme18I	GGWCC	3 cut(s)	297, 703, 845
BmeRI	GACNNNNNGTC	1 cut(s)	61
BmgT120I	GGNCC	5 cut(s)	297, 356, 703, 845, 1081
BmiI	GGNNCC	4 cut(s)	157, 435, 816, 1912
BmrFI	CCNGG	3 cut(s)	185, 301, 831
BmsI	GCATC	2 cut(s)	1273, 1328
BmtI	GCTAGC	3 cut(s)	9, 375, 606
BpiI	GAAGAC	5 cut(s)	163, 490, 898, 1502, 1829
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BpmI	CTGGAG	3 cut(s)	87, 215, 666
Bpu14I	TTCGAA	1 cut(s)	215
BpuEI	CTTGAG	3 cut(s)	1289, 2044, 2099
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	300, 830, 1327
BsaWI	WCCGGW	3 cut(s)	581, 893, 1933
BsaXI	ACNNNNNCTCC	6 cut(s)	188, 218, 888, 918, 1155, 1185
Bsc4I	CCNNNNNNNGG	1 cut(s)	854
Bse118I	RCCGGY	1 cut(s)	1933
Bse1I	ACTGG	3 cut(s)	1083, 1294, 1630
Bse3DI	GCAATG	6 cut(s)	546, 748, 1413, 1440, 1914, 1923
BseAI	TCCGGA	1 cut(s)	893
BseBI	CCWGG	3 cut(s)	185, 301, 831
BseDI	CCNNGG	3 cut(s)	300, 830, 1327
BseGI	GGATG	5 cut(s)	224, 826, 1323, 1343, 1401
BseLI	CCNNNNNNNGG	1 cut(s)	854
BseMI	GCAATG	6 cut(s)	546, 748, 1413, 1440, 1914, 1923
BseMII	CTCAG	3 cut(s)	305, 517, 878
BseNI	ACTGG	3 cut(s)	1083, 1294, 1630
BseRI	GAGGAG	2 cut(s)	426, 1763
BseSI	GKGCMC	2 cut(s)	482, 1685
BseX3I	CGGCCG	2 cut(s)	483, 986
BseXI	GCAGC	7 cut(s)	102, 317, 531, 534, 586, 967, 1713
BseYI	CCCAGC	2 cut(s)	474, 1947
BsgI	GTGCAG	1 cut(s)	966
Bsh1285I	CGRYCG	2 cut(s)	486, 989
BshFI	GGCC	8 cut(s)	357, 485, 774, 988, 1082, 1136, 1557, 1825
BshTI	ACCGGT	1 cut(s)	1933
BsiEI	CGRYCG	2 cut(s)	486, 989
BsiHKAI	GWGCWC	2 cut(s)	1078, 1419
BsiSI	CCGG	6 cut(s)	42, 246, 582, 894, 1133, 1934
BslFI	GGGAC	1 cut(s)	1025
BslI	CCNNNNNNNGG	1 cut(s)	854
BsmAI	GTCTC	2 cut(s)	1618, 2020
BsmFI	GGGAC	1 cut(s)	1025
BsmI	GAATGC	1 cut(s)	1591
BsnI	GGCC	8 cut(s)	357, 485, 774, 988, 1082, 1136, 1557, 1825
Bsp119I	TTCGAA	1 cut(s)	215
Bsp1286I	GDGCHC	4 cut(s)	482, 1078, 1419, 1685
Bsp13I	TCCGGA	1 cut(s)	893
Bsp1407I	TGTACA	1 cut(s)	1247
Bsp143I	GATC	6 cut(s)	420, 1166, 1276, 1518, 1695, 1956
BspACI	CCGC	7 cut(s)	26, 202, 375, 486, 1264, 1664, 2032
BspANI	GGCC	8 cut(s)	357, 485, 774, 988, 1082, 1136, 1557, 1825
BspCNI	CTCAG	3 cut(s)	304, 516, 879
BspEI	TCCGGA	1 cut(s)	893
BspLI	GGNNCC	4 cut(s)	157, 435, 816, 1912
BspMAI	CTGCAG	1 cut(s)	1432
BspOI	GCTAGC	3 cut(s)	9, 375, 606
BspPI	GGATC	4 cut(s)	1174, 1271, 1526, 1951
BspQI	GCTCTTC	1 cut(s)	1196
BspT104I	TTCGAA	1 cut(s)	215
BsrDI	GCAATG	6 cut(s)	546, 748, 1413, 1440, 1914, 1923
BsrFI	RCCGGY	1 cut(s)	1933
BsrGI	TGTACA	1 cut(s)	1247
BsrI	ACTGG	3 cut(s)	1083, 1294, 1630
BssAI	RCCGGY	1 cut(s)	1933
BssECI	CCNNGG	3 cut(s)	300, 830, 1327
BssMI	GATC	6 cut(s)	420, 1166, 1276, 1518, 1695, 1956
BssNAI	GTATAC	1 cut(s)	721
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	1327
Bst1107I	GTATAC	1 cut(s)	721
Bst2UI	CCWGG	3 cut(s)	185, 301, 831
Bst4CI	ACNGT	4 cut(s)	21, 451, 943, 1702
Bst6I	CTCTTC	3 cut(s)	1196, 1731, 1833
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	1 cut(s)	1886
BstAUI	TGTACA	1 cut(s)	1247
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	8 cut(s)	7, 373, 472, 604, 673, 739, 1599, 1731
BstDEI	CTNAG	6 cut(s)	291, 503, 887, 1689, 1832, 2094
BstF5I	GGATG	5 cut(s)	224, 826, 1323, 1343, 1401
BstH2I	RGCGCY	2 cut(s)	975, 1635
BstHHI	GCGC	2 cut(s)	974, 1634
BstKTI	GATC	6 cut(s)	423, 1169, 1279, 1521, 1698, 1959
BstMAI	GTCTC	2 cut(s)	1618, 2020
BstMBI	GATC	6 cut(s)	420, 1166, 1276, 1518, 1695, 1956
BstMCI	CGRYCG	2 cut(s)	486, 989
BstNI	CCWGG	3 cut(s)	185, 301, 831
BstNSI	RCATGY	2 cut(s)	1643, 1981
BstSCI	CCNGG	3 cut(s)	183, 299, 829
BstSFI	CTRYAG	4 cut(s)	414, 1143, 1428, 1648
BstSLI	GKGCMC	2 cut(s)	482, 1685
BstV1I	GCAGC	7 cut(s)	102, 317, 531, 534, 586, 967, 1713
BstV2I	GAAGAC	5 cut(s)	163, 490, 898, 1502, 1829
BstX2I	RGATCY	1 cut(s)	1276
BstXI	CCANNNNNNTGG	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	1276
BstZ17I	GTATAC	1 cut(s)	721
BstZI	CGGCCG	2 cut(s)	483, 986
BsuI	GTATCC	1 cut(s)	1246
BsuRI	GGCC	8 cut(s)	357, 485, 774, 988, 1082, 1136, 1557, 1825
BtsCI	GGATG	5 cut(s)	224, 826, 1323, 1343, 1401
BtsI	GCAGTG	5 cut(s)	240, 1206, 1365, 1437, 1887
Cac8I	GCNNGC	8 cut(s)	7, 373, 472, 604, 673, 739, 1599, 1731
CaiI	CAGNNNCTG	1 cut(s)	510
CfoI	GCGC	2 cut(s)	974, 1634
Cfr10I	RCCGGY	1 cut(s)	1933
Cfr13I	GGNCC	5 cut(s)	297, 356, 703, 845, 1081
Csp6I	GTAC	6 cut(s)	49, 392, 1248, 1741, 1864, 1902
CspAI	ACCGGT	1 cut(s)	1933
CviAII	CATG	9 cut(s)	440, 698, 1195, 1640, 1773, 1896, 1978, 1999, 2041
CviQI	GTAC	6 cut(s)	49, 392, 1248, 1741, 1864, 1902
DdeI	CTNAG	6 cut(s)	291, 503, 887, 1689, 1832, 2094
DpnI	GATC	6 cut(s)	422, 1168, 1278, 1520, 1697, 1958
DpnII	GATC	6 cut(s)	420, 1166, 1276, 1518, 1695, 1956
DriI	GACNNNNNGTC	1 cut(s)	61
EaeI	YGGCCR	5 cut(s)	483, 772, 986, 1134, 1555
EagI	CGGCCG	2 cut(s)	483, 986
Eam1104I	CTCTTC	3 cut(s)	1196, 1731, 1833
Eam1105I	GACNNNNNGTC	1 cut(s)	61
EarI	CTCTTC	3 cut(s)	1196, 1731, 1833
EciI	GGCGGA	1 cut(s)	15
EclXI	CGGCCG	2 cut(s)	483, 986
Eco130I	CCWWGG	1 cut(s)	1327
Eco32I	GATATC	1 cut(s)	1258
Eco47I	GGWCC	3 cut(s)	297, 703, 845
Eco52I	CGGCCG	2 cut(s)	483, 986
Eco57I	CTGAAG	1 cut(s)	1203
EcoRII	CCWGG	3 cut(s)	183, 299, 829
EcoRV	GATATC	1 cut(s)	1258
EcoT14I	CCWWGG	1 cut(s)	1327
ErhI	CCWWGG	1 cut(s)	1327
FaeI	CATG	9 cut(s)	443, 701, 1198, 1643, 1776, 1899, 1981, 2002, 2044
FalI	AAGNNNNNCTT	4 cut(s)	343, 375, 995, 1027
FaqI	GGGAC	1 cut(s)	1025
FatI	CATG	9 cut(s)	439, 697, 1194, 1639, 1772, 1895, 1977, 1998, 2040
FauNDI	CATATG	1 cut(s)	1252
FblI	GTMKAC	2 cut(s)	633, 720
Fnu4HI	GCNGC	8 cut(s)	91, 306, 486, 545, 548, 600, 981, 1727
FokI	GGATG	5 cut(s)	211, 813, 1310, 1350, 1408
Fsp4HI	GCNGC	8 cut(s)	91, 306, 486, 545, 548, 600, 981, 1727
FspBI	CTAG	9 cut(s)	6, 276, 372, 603, 707, 902, 1064, 1314, 1490
GlaI	GCGC	2 cut(s)	973, 1633
GluI	GCNGC	8 cut(s)	91, 306, 486, 545, 548, 600, 981, 1727
GsaI	CCCAGC	2 cut(s)	478, 1951
GsuI	CTGGAG	3 cut(s)	87, 215, 666
HaeII	RGCGCY	2 cut(s)	975, 1635
HaeIII	GGCC	8 cut(s)	357, 485, 774, 988, 1082, 1136, 1557, 1825
HapII	CCGG	6 cut(s)	42, 246, 582, 894, 1133, 1934
HhaI	GCGC	2 cut(s)	974, 1634
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	9 cut(s)	443, 701, 1198, 1643, 1776, 1899, 1981, 2002, 2044
Hin6I	GCGC	2 cut(s)	972, 1632
HinP1I	GCGC	2 cut(s)	972, 1632
HincII	GTYRAC	1 cut(s)	952
HindII	GTYRAC	1 cut(s)	952
HinfI	GANTC	2 cut(s)	804, 1564
HpaII	CCGG	6 cut(s)	42, 246, 582, 894, 1133, 1934
HphI	GGTGA	1 cut(s)	1653
Hpy166II	GTNNAC	6 cut(s)	297, 589, 634, 721, 952, 1983
Hpy188I	TCNGA	3 cut(s)	123, 229, 1222
Hpy8I	GTNNAC	6 cut(s)	297, 589, 634, 721, 952, 1983
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyAV	CCTTC	7 cut(s)	95, 100, 169, 1705, 1979, 2077, 2083
HpyCH4III	ACNGT	4 cut(s)	21, 451, 943, 1702
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	9 cut(s)	575, 983, 1037, 1286, 1430, 1475, 1589, 1889, 2122
HpyF3I	CTNAG	6 cut(s)	291, 503, 887, 1689, 1832, 2094
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	9 cut(s)	443, 701, 1198, 1643, 1776, 1899, 1981, 2002, 2044
HspAI	GCGC	2 cut(s)	972, 1632
Kpn2I	TCCGGA	1 cut(s)	893
Kzo9I	GATC	6 cut(s)	420, 1166, 1276, 1518, 1695, 1956
LguI	GCTCTTC	1 cut(s)	1196
LmnI	GCTCC	7 cut(s)	155, 377, 439, 814, 1073, 1481, 1493
Lsp1109I	GCAGC	7 cut(s)	102, 317, 531, 534, 586, 967, 1713
LweI	GCATC	2 cut(s)	1273, 1328
MaeI	CTAG	9 cut(s)	6, 276, 372, 603, 707, 902, 1064, 1314, 1490
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	5 cut(s)	15, 532, 1007, 1201, 1659
MalI	GATC	6 cut(s)	422, 1168, 1278, 1520, 1697, 1958
MboI	GATC	6 cut(s)	420, 1166, 1276, 1518, 1695, 1956
MfeI	CAATTG	2 cut(s)	1476, 1905
MflI	RGATCY	1 cut(s)	1276
MhlI	GDGCHC	4 cut(s)	482, 1078, 1419, 1685
MlsI	TGGCCA	1 cut(s)	774
MluNI	TGGCCA	1 cut(s)	774
MmeI	TCCRAC	4 cut(s)	109, 907, 1373, 1774
Mox20I	TGGCCA	1 cut(s)	774
MroI	TCCGGA	1 cut(s)	893
MscI	TGGCCA	1 cut(s)	774
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	2 cut(s)	229, 1199
Msp20I	TGGCCA	1 cut(s)	774
MspI	CCGG	6 cut(s)	42, 246, 582, 894, 1133, 1934
MspR9I	CCNGG	3 cut(s)	185, 301, 831
MunI	CAATTG	2 cut(s)	1476, 1905
Mva1269I	GAATGC	1 cut(s)	1591
MvaI	CCWGG	3 cut(s)	185, 301, 831
NdeI	CATATG	1 cut(s)	1252
NdeII	GATC	6 cut(s)	420, 1166, 1276, 1518, 1695, 1956
NheI	GCTAGC	3 cut(s)	5, 371, 602
NlaIII	CATG	9 cut(s)	443, 701, 1198, 1643, 1776, 1899, 1981, 2002, 2044
NlaIV	GGNNCC	4 cut(s)	157, 435, 816, 1912
NmeAIII	GCCGAG	1 cut(s)	1583
NmuCI	GTSAC	3 cut(s)	15, 1201, 1659
NspI	RCATGY	2 cut(s)	1643, 1981
NspV	TTCGAA	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	1196
PctI	GAATGC	1 cut(s)	1591
PfeI	GAWTC	2 cut(s)	804, 1564
PinAI	ACCGGT	1 cut(s)	1933
PkrI	GCNGC	8 cut(s)	92, 307, 487, 546, 549, 601, 982, 1728
Psp6I	CCWGG	3 cut(s)	183, 299, 829
PspFI	CCCAGC	2 cut(s)	474, 1947
PspGI	CCWGG	3 cut(s)	183, 299, 829
PspN4I	GGNNCC	4 cut(s)	157, 435, 816, 1912
PspPI	GGNCC	5 cut(s)	297, 356, 703, 845, 1081
PsrI	GAACNNNNNNTAC	2 cut(s)	1894, 1926
PstI	CTGCAG	1 cut(s)	1432
PstNI	CAGNNNCTG	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	1276
RsaI	GTAC	6 cut(s)	50, 393, 1249, 1742, 1865, 1903
RsaNI	GTAC	6 cut(s)	49, 392, 1248, 1741, 1864, 1902
RseI	CAYNNNNRTG	2 cut(s)	229, 1199
SapI	GCTCTTC	1 cut(s)	1196
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	8 cut(s)	91, 306, 486, 545, 548, 600, 981, 1727
Sau3AI	GATC	6 cut(s)	420, 1166, 1276, 1518, 1695, 1956
Sau96I	GGNCC	5 cut(s)	297, 356, 703, 845, 1081
ScaI	AGTACT	1 cut(s)	50
ScrFI	CCNGG	3 cut(s)	185, 301, 831
SduI	GDGCHC	4 cut(s)	482, 1078, 1419, 1685
SfaNI	GCATC	2 cut(s)	1273, 1328
SfcI	CTRYAG	4 cut(s)	414, 1143, 1428, 1648
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	3 cut(s)	297, 703, 845
SmiMI	CAYNNNNRTG	2 cut(s)	229, 1199
SmlI	CTYRAG	3 cut(s)	1304, 2023, 2078
SmoI	CTYRAG	3 cut(s)	1304, 2023, 2078
SsiI	CCGC	7 cut(s)	26, 202, 375, 486, 1264, 1664, 2032
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	9 cut(s)	6, 276, 372, 603, 707, 902, 1064, 1314, 1490
StyD4I	CCNGG	3 cut(s)	183, 299, 829
StyI	CCWWGG	1 cut(s)	1327
TaaI	ACNGT	4 cut(s)	21, 451, 943, 1702
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	215
TatI	WGTACW	3 cut(s)	48, 1247, 1740
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	2 cut(s)	804, 1564
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseFI	GTSAC	3 cut(s)	15, 1201, 1659
TseI	GCWGC	7 cut(s)	90, 305, 544, 547, 599, 980, 1726
Tsp45I	GTSAC	3 cut(s)	15, 1201, 1659
TspDTI	ATGAA	4 cut(s)	686, 1183, 1374, 2033
VpaK11BI	GGWCC	3 cut(s)	297, 703, 845
XapI	RAATTY	1 cut(s)	2067
XceI	RCATGY	2 cut(s)	1643, 1981
XmiI	GTMKAC	2 cut(s)	633, 720
XspI	CTAG	9 cut(s)	6, 276, 372, 603, 707, 902, 1064, 1314, 1490
ZraI	GACGTC	1 cut(s)	58
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.