Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

7202090 .. 7204144

Gene Structure 2055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0043500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGACAAGGAGGTGGTGGCCTACTTTGGGTGATCGGACAAAGCTAAATTGCTTACAGACTTGCGTTGCTAGTGCAACAATTACTGAGAGGATCATGAAGGCTCTTAAAGACTATGACGACGATGAAATCCCACCTGAAAGTGTCCATTGCTATGTTCTTTATGAATGCCGCAAGTGGAATCTTGTTTGGGTAGGAAAGAAAAAGGTGGCCTCACTTGAGCTTGATGAAGTTGAAATGCTTTTGGGGTTCTTAAGGGACCACACAAGGGGAATAAGCAGGACAGTTAGATATAAGTCAATGGGAAATTCATTCCAGATTGATACAGTGACTTATCACCTGTTAGTTTTGAAAGATCGATTTCCCAATGGCATCAATGTCCTCTCTCTTTTCTCTGGGATTGGTGGTGCAGAGATAGCTCTTCATCGTCTTGGTATCCCGATGAAGAATGTTGTGTCAGTGGAGATATCAGAGTTGAGCAGAAATGTTGTGAGGTGTTGGTGGGAGCAGACAAACCAGAGAGGGAACTTGTATCACCTTGCTGATGTGCAAGAGTTGAATGCTAACCGCTTAGAGCATTATATCAGTTCCTTTGGTGGGTTTGATCTAGTGATTGGTGGCAGTCTATGTAACAATCTTGCGGGTAGCAACAGGCACCATCGGGATGGGCTTGAGGGCATGCATGAACAGCAGAGGGAATACCAGATTGGAACAGCATACAAGAAGATGACTTGGGAAGTAATTCCATATGCATGTTCTGTCTATTCAGACACAACACGCATTTCACCCATATTGTTTGCTCCTTATGTTGTGTCTATTAATTGCAGCTCATGTATTGGACTTTTGGAGTCTCAATTTGAGATTTCTTCTTTCTCAGATCCTAGCTCGGAAACTGGGACTTATGGTGGCTTCCTGGCAGTTGGCCCTAGTGTTGAGAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

313

Amino Acids

35.37

Weight (kDa)

6.15

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	651
AciI	CCGC	3 cut(s)	169, 565, 638
AclWI	GGATC	2 cut(s)	98, 869
AcsI	RAATTY	1 cut(s)	304
AfiI	CCNNNNNNNGG	3 cut(s)	26, 265, 594
AflII	CTTAAG	1 cut(s)	250
AgsI	TTSAA	3 cut(s)	233, 349, 556
AjnI	CCWGG	1 cut(s)	909
AjuI	GAANNNNNNNTTGG	2 cut(s)	687, 719
AluBI	AGCT	5 cut(s)	43, 220, 416, 825, 882
AluI	AGCT	5 cut(s)	43, 220, 416, 825, 882
Alw26I	GTCTC	1 cut(s)	852
AlwI	GGATC	2 cut(s)	98, 869
AoxI	GGCC	3 cut(s)	17, 207, 919
ApeKI	GCWGC	1 cut(s)	822
ApoI	RAATTY	1 cut(s)	304
AseI	ATTAAT	1 cut(s)	816
Asp700I	GAANNNNTTC	1 cut(s)	738
AspS9I	GGNCC	2 cut(s)	256, 920
AsuHPI	GGTGA	4 cut(s)	41, 326, 524, 774
AvaII	GGWCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	651
BbvI	GCAGC	1 cut(s)	834
BccI	CCATC	2 cut(s)	656, 663
BciT130I	CCWGG	1 cut(s)	911
BciVI	GTATCC	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	852
BfaI	CTAG	4 cut(s)	69, 605, 879, 924
BfrI	CTTAAG	1 cut(s)	250
BfuI	GTATCC	1 cut(s)	443
BisI	GCNGC	2 cut(s)	169, 823
BlsI	GCNGC	2 cut(s)	170, 824
Bme1390I	CCNGG	1 cut(s)	911
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	2 cut(s)	256, 920
BmiI	GGNNCC	2 cut(s)	257, 653
BmrFI	CCNGG	1 cut(s)	911
BmrI	ACTGGG	1 cut(s)	900
BmsI	GCATC	1 cut(s)	378
BmuI	ACTGGG	1 cut(s)	900
BpuEI	CTTGAG	2 cut(s)	236, 689
Bsa29I	ATCGAT	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 265, 594
Bse1I	ACTGG	1 cut(s)	895
Bse3DI	GCAATG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	911
BseCI	ATCGAT	1 cut(s)	355
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	3 cut(s)	26, 265, 594
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	75, 885
BseNI	ACTGG	1 cut(s)	895
BseXI	GCAGC	1 cut(s)	834
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	3 cut(s)	19, 209, 921
BshNI	GGYRCC	1 cut(s)	651
BshVI	ATCGAT	1 cut(s)	355
BslFI	GGGAC	2 cut(s)	269, 907
BslI	CCNNNNNNNGG	3 cut(s)	26, 265, 594
BsmAI	GTCTC	1 cut(s)	852
BsmFI	GGGAC	2 cut(s)	269, 907
BsmI	GAATGC	2 cut(s)	170, 562
BsnI	GGCC	3 cut(s)	19, 209, 921
Bsp143I	GATC	5 cut(s)	31, 90, 352, 601, 874
BspACI	CCGC	3 cut(s)	169, 565, 638
BspANI	GGCC	3 cut(s)	19, 209, 921
BspCNI	CTCAG	2 cut(s)	76, 884
BspDI	ATCGAT	1 cut(s)	355
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	257, 653
BspPI	GGATC	2 cut(s)	98, 869
BspQI	GCTCTTC	1 cut(s)	423
BspT107I	GGYRCC	1 cut(s)	651
BspTI	CTTAAG	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	895
BssMI	GATC	5 cut(s)	31, 90, 352, 601, 874
Bst2UI	CCWGG	1 cut(s)	911
Bst4CI	ACNGT	2 cut(s)	283, 325
Bst6I	CTCTTC	1 cut(s)	423
BstAFI	CTTAAG	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	677
BstDEI	CTNAG	3 cut(s)	84, 568, 871
BstF5I	GGATG	1 cut(s)	667
BstKTI	GATC	5 cut(s)	34, 93, 355, 604, 877
BstMAI	GTCTC	1 cut(s)	852
BstMBI	GATC	5 cut(s)	31, 90, 352, 601, 874
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 685
BstNI	CCWGG	1 cut(s)	911
BstNSI	RCATGY	2 cut(s)	679, 753
BstSCI	CCNGG	1 cut(s)	909
BstV1I	GCAGC	1 cut(s)	834
BstX2I	RGATCY	1 cut(s)	874
BstXI	CCANNNNNNTGG	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	874
Bsu15I	ATCGAT	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	443
BsuRI	GGCC	3 cut(s)	19, 209, 921
BsuTUI	ATCGAT	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	667
BtsIMutI	CAGTG	2 cut(s)	330, 462
Cac8I	GCNNGC	1 cut(s)	677
CciI	TCATGA	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	256, 920
ClaI	ATCGAT	1 cut(s)	355
CviAII	CATG	5 cut(s)	94, 676, 680, 750, 828
DdeI	CTNAG	3 cut(s)	84, 568, 871
DpnI	GATC	5 cut(s)	33, 92, 354, 603, 876
DpnII	GATC	5 cut(s)	31, 90, 352, 601, 874
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco32I	GATATC	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	909
EcoRV	GATATC	1 cut(s)	465
EcoT22I	ATGCAT	2 cut(s)	681, 751
FaeI	CATG	5 cut(s)	97, 679, 683, 753, 831
FaqI	GGGAC	2 cut(s)	269, 907
FatI	CATG	5 cut(s)	93, 675, 679, 749, 827
FauI	CCCGC	1 cut(s)	631
FauNDI	CATATG	1 cut(s)	745
Fnu4HI	GCNGC	2 cut(s)	169, 823
FokI	GGATG	1 cut(s)	674
Fsp4HI	GCNGC	2 cut(s)	169, 823
FspBI	CTAG	4 cut(s)	69, 605, 879, 924
GluI	GCNGC	2 cut(s)	169, 823
HaeIII	GGCC	3 cut(s)	19, 209, 921
Hin1II	CATG	5 cut(s)	97, 679, 683, 753, 831
HinfI	GANTC	2 cut(s)	178, 845
HphI	GGTGA	4 cut(s)	41, 326, 524, 774
Hpy188I	TCNGA	5 cut(s)	36, 469, 766, 874, 886
Hpy188III	TCNNGA	4 cut(s)	94, 313, 436, 659
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	2 cut(s)	283, 325
HpyCH4V	TGCA	6 cut(s)	74, 407, 547, 679, 749, 822
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 685
HpyF3I	CTNAG	3 cut(s)	84, 568, 871
Hsp92II	CATG	5 cut(s)	97, 679, 683, 753, 831
Kzo9I	GATC	5 cut(s)	31, 90, 352, 601, 874
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	2 cut(s)	502, 802
Lsp1109I	GCAGC	1 cut(s)	834
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	4 cut(s)	69, 605, 879, 924
MaeIII	GTNAC	2 cut(s)	325, 626
MalI	GATC	5 cut(s)	33, 92, 354, 603, 876
MboI	GATC	5 cut(s)	31, 90, 352, 601, 874
MboII	GAAGA	4 cut(s)	410, 454, 733, 855
MflI	RGATCY	1 cut(s)	874
MluCI	AATT	6 cut(s)	46, 78, 304, 738, 817, 851
MlyI	GAGTC	1 cut(s)	854
MnlI	CCTC	8 cut(s)	3, 81, 220, 389, 483, 512, 664, 684
Mph1103I	ATGCAT	2 cut(s)	681, 751
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	3 cut(s)	105, 251, 816
MslI	CAYNNNNRTG	3 cut(s)	150, 660, 748
MspCI	CTTAAG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	911
Mva1269I	GAATGC	2 cut(s)	170, 562
MvaI	CCWGG	1 cut(s)	911
MwoI	GCNNNNNNNGC	2 cut(s)	413, 685
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	5 cut(s)	31, 90, 352, 601, 874
NlaIII	CATG	5 cut(s)	97, 679, 683, 753, 831
NlaIV	GGNNCC	2 cut(s)	257, 653
NmuCI	GTSAC	1 cut(s)	325
NsiI	ATGCAT	2 cut(s)	681, 751
NspI	RCATGY	2 cut(s)	679, 753
PaeI	GCATGC	1 cut(s)	679
PagI	TCATGA	1 cut(s)	93
PciSI	GCTCTTC	1 cut(s)	423
PctI	GAATGC	2 cut(s)	170, 562
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	170, 824
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
PshBI	ATTAAT	1 cut(s)	816
Psp6I	CCWGG	1 cut(s)	909
PspGI	CCWGG	1 cut(s)	909
PspN4I	GGNNCC	2 cut(s)	257, 653
PspPI	GGNCC	2 cut(s)	256, 920
PsuI	RGATCY	1 cut(s)	874
RseI	CAYNNNNRTG	3 cut(s)	150, 660, 748
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	105, 251, 816
SatI	GCNGC	2 cut(s)	169, 823
Sau3AI	GATC	5 cut(s)	31, 90, 352, 601, 874
Sau96I	GGNCC	2 cut(s)	256, 920
SchI	GAGTC	1 cut(s)	854
ScrFI	CCNGG	1 cut(s)	911
SfaNI	GCATC	1 cut(s)	378
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	3 cut(s)	150, 660, 748
SmlI	CTYRAG	3 cut(s)	215, 250, 668
SmoI	CTYRAG	3 cut(s)	215, 250, 668
SphI	GCATGC	1 cut(s)	679
Sse9I	AATT	6 cut(s)	46, 78, 304, 738, 817, 851
SsiI	CCGC	3 cut(s)	169, 565, 638
SspMI	CTAG	4 cut(s)	69, 605, 879, 924
StyD4I	CCNGG	1 cut(s)	909
TaaI	ACNGT	2 cut(s)	283, 325
TaqI	TCGA	1 cut(s)	355
TasI	AATT	6 cut(s)	46, 78, 304, 738, 817, 851
TauI	GCSGC	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	3 cut(s)	105, 251, 816
Tru9I	TTAA	3 cut(s)	105, 251, 816
TscAI	CASTG	2 cut(s)	330, 462
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	822
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	8 cut(s)	110, 138, 177, 240, 297, 410, 455, 696
TspRI	CASTG	2 cut(s)	330, 462
Vha464I	CTTAAG	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	256
VspI	ATTAAT	1 cut(s)	816
XapI	RAATTY	1 cut(s)	304
XceI	RCATGY	2 cut(s)	679, 753
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	4 cut(s)	69, 605, 879, 924
Zsp2I	ATGCAT	2 cut(s)	681, 751

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.