Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

11460207 .. 11460792

Gene Structure 586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0074000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTGAAGACATGGCATCGCGTCTGACGGAGGCTTTAGCCTTCACGGAAGAGGCGGTAGTTGATTTTGGTGAGGTAGGTGCGGCGGAGGCGCATCACTATTTTGTTGGTAGCTTGGTTCAGACGAAGAGTGGTGATGGTCCCGGTTTACCCGAAACCCTTACTGCCATTGGGGTCTGGGTGATCGTTTTTCGATCTCGCTGGTGGGAGAGGGGAGGTGGACCGTATCCCACTATATTCATTACAGACAAGGGTCACCGTCCAGTGTTTACCGCCGCGCCTCTGGACGGAGGAGTCATTGGTCTTCATCGGCTCCTTAATGGGGTGATTTCTGCATACATACCAGTTCAGATTGCAGCGATCGGTGCCAGAGTAGAAGTCCAGAGTGCTGCTGGATCTTCGTCGCGGGATTTGGTTGACCCGGACCTTCCTCTTCACCTTCGGCATCGAGGCAATGGTGGAAATGCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

157

Amino Acids

16.64

Weight (kDa)

5.6

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	365
AccII	CGCG	3 cut(s)	22, 278, 406
AciI	CCGC	6 cut(s)	56, 83, 86, 273, 276, 406
AclWI	GGATC	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	287, 322
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
AlwI	GGATC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	356, 389
AspLEI	GCGC	2 cut(s)	94, 280
AspS9I	GGNCC	3 cut(s)	140, 221, 424
AsuC2I	CCSGG	2 cut(s)	144, 422
AsuHPI	GGTGA	6 cut(s)	83, 146, 193, 248, 337, 428
AvaII	GGWCC	3 cut(s)	140, 221, 424
BanI	GGYRCC	1 cut(s)	365
BbsI	GAAGAC	2 cut(s)	15, 296
BbvI	GCAGC	2 cut(s)	368, 376
BccI	CCATC	1 cut(s)	131
BciVI	GTATCC	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	144, 422
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	4 cut(s)	84, 276, 357, 390
BlsI	GCNGC	4 cut(s)	85, 277, 358, 391
Bme1390I	CCNGG	2 cut(s)	144, 422
Bme18I	GGWCC	3 cut(s)	140, 221, 424
BmgT120I	GGNCC	3 cut(s)	140, 221, 424
BmiI	GGNNCC	3 cut(s)	142, 314, 367
BmrFI	CCNGG	2 cut(s)	144, 422
BmsI	GCATC	3 cut(s)	26, 103, 454
BoxI	GACNNNNGTC	1 cut(s)	252
BpiI	GAAGAC	2 cut(s)	15, 296
BpuMI	CCSGG	2 cut(s)	144, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	287, 322
Bse1I	ACTGG	2 cut(s)	263, 344
Bse3DI	GCAATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	287, 322
BseMI	GCAATG	1 cut(s)	460
BseNI	ACTGG	2 cut(s)	263, 344
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	368, 376
Bsh1236I	CGCG	3 cut(s)	22, 278, 406
Bsh1285I	CGRYCG	1 cut(s)	363
BshNI	GGYRCC	1 cut(s)	365
BsiEI	CGRYCG	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	144, 422
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	287, 322
BsmFI	GGGAC	1 cut(s)	126
Bsp143I	GATC	4 cut(s)	183, 194, 360, 395
BspACI	CCGC	6 cut(s)	56, 83, 86, 273, 276, 406
BspFNI	CGCG	3 cut(s)	22, 278, 406
BspLI	GGNNCC	3 cut(s)	142, 314, 367
BspPI	GGATC	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	263, 344
BssMI	GATC	4 cut(s)	183, 194, 360, 395
Bst4CI	ACNGT	2 cut(s)	225, 260
Bst6I	CTCTTC	3 cut(s)	45, 122, 438
BstEII	GGTNACC	1 cut(s)	254
BstFNI	CGCG	3 cut(s)	22, 278, 406
BstHHI	GCGC	2 cut(s)	94, 280
BstKTI	GATC	4 cut(s)	186, 197, 363, 398
BstMBI	GATC	4 cut(s)	183, 194, 360, 395
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 365
BstPAI	GACNNNNGTC	1 cut(s)	252
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	142, 420
BstUI	CGCG	3 cut(s)	22, 278, 406
BstV1I	GCAGC	2 cut(s)	368, 376
BstV2I	GAAGAC	2 cut(s)	15, 296
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BsuI	GTATCC	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	3
BtsIMutI	CAGTG	1 cut(s)	270
CfoI	GCGC	2 cut(s)	94, 280
Cfr13I	GGNCC	3 cut(s)	140, 221, 424
CseI	GACGC	1 cut(s)	11
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	5 cut(s)	5, 35, 41, 114, 313
CviKI_1	RGCY	5 cut(s)	5, 35, 41, 114, 313
DpnI	GATC	4 cut(s)	185, 196, 362, 397
DpnII	GATC	4 cut(s)	183, 194, 360, 395
DrdI	GACNNNNNNGTC	1 cut(s)	293
DseDI	GACNNNNNNGTC	1 cut(s)	293
Eam1104I	CTCTTC	3 cut(s)	45, 122, 438
EarI	CTCTTC	3 cut(s)	45, 122, 438
EciI	GGCGGA	1 cut(s)	101
Eco47I	GGWCC	3 cut(s)	140, 221, 424
Eco57I	CTGAAG	1 cut(s)	27
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
FaeI	CATG	1 cut(s)	16
FaiI	YATR	5 cut(s)	14, 236, 337, 341, 472
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	1 cut(s)	12
FauI	CCCGC	1 cut(s)	399
Fnu4HI	GCNGC	4 cut(s)	84, 276, 357, 390
Fsp4HI	GCNGC	4 cut(s)	84, 276, 357, 390
GlaI	GCGC	2 cut(s)	93, 279
GluI	GCNGC	4 cut(s)	84, 276, 357, 390
HapII	CCGG	2 cut(s)	144, 422
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	2 cut(s)	94, 280
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	2 cut(s)	92, 278
HinP1I	GCGC	2 cut(s)	92, 278
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HinfI	GANTC	1 cut(s)	294
HpaII	CCGG	2 cut(s)	144, 422
HphI	GGTGA	6 cut(s)	83, 146, 193, 248, 337, 428
Hpy166II	GTNNAC	4 cut(s)	149, 221, 270, 418
Hpy188I	TCNGA	3 cut(s)	27, 123, 351
Hpy188III	TCNNGA	2 cut(s)	284, 382
Hpy8I	GTNNAC	4 cut(s)	149, 221, 270, 418
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	3 cut(s)	52, 437, 449
HpyCH4III	ACNGT	2 cut(s)	225, 260
HpyCH4V	TGCA	3 cut(s)	335, 356, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 365
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	2 cut(s)	92, 278
Kzo9I	GATC	4 cut(s)	183, 194, 360, 395
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	2 cut(s)	368, 376
LweI	GCATC	3 cut(s)	26, 103, 454
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	4 cut(s)	185, 196, 362, 397
MboI	GATC	4 cut(s)	183, 194, 360, 395
MboII	GAAGA	6 cut(s)	20, 62, 139, 296, 390, 425
MflI	RGATCY	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	303
MseI	TTAA	1 cut(s)	318
MspI	CCGG	2 cut(s)	144, 422
MspR9I	CCNGG	2 cut(s)	144, 422
MvnI	CGCG	3 cut(s)	22, 278, 406
MwoI	GCNNNNNNNGC	2 cut(s)	89, 365
NciI	CCSGG	2 cut(s)	144, 422
NdeII	GATC	4 cut(s)	183, 194, 360, 395
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	3 cut(s)	142, 314, 367
NmuCI	GTSAC	1 cut(s)	254
PkrI	GCNGC	4 cut(s)	85, 277, 358, 391
Ple19I	CGATCG	1 cut(s)	363
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
PshAI	GACNNNNGTC	1 cut(s)	252
PspEI	GGTNACC	1 cut(s)	254
PspN4I	GGNNCC	3 cut(s)	142, 314, 367
PspPI	GGNCC	3 cut(s)	140, 221, 424
PsuI	RGATCY	1 cut(s)	395
PvuI	CGATCG	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	4 cut(s)	84, 276, 357, 390
Sau3AI	GATC	4 cut(s)	183, 194, 360, 395
Sau96I	GGNCC	3 cut(s)	140, 221, 424
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	2 cut(s)	144, 422
SetI	ASST	6 cut(s)	78, 82, 116, 220, 429, 441
SfaNI	GCATC	3 cut(s)	26, 103, 454
SinI	GGWCC	3 cut(s)	140, 221, 424
SsiI	CCGC	6 cut(s)	56, 83, 86, 273, 276, 406
StyD4I	CCNGG	2 cut(s)	142, 420
TaaI	ACNGT	2 cut(s)	225, 260
TaqI	TCGA	2 cut(s)	193, 448
TauI	GCSGC	2 cut(s)	86, 278
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	2 cut(s)	356, 389
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	2 cut(s)	229, 296
TspGWI	ACGGA	3 cut(s)	44, 62, 303
TspRI	CASTG	1 cut(s)	270
VpaK11BI	GGWCC	3 cut(s)	140, 221, 424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.