Rorug07G0255100

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
23825332 .. 23829180
3849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0255100.1

Sequence Viewer

Length: 1146 bp
ATGGCCGCTACCAGCACCACTTCAACTGCTTTAATCAACACCTTGCAACCCTCTTCCCTTCAAAGGCTCTCAAGACCCAAATGGACAGTCACCAACCTTTCTCTCCCACCACCTCCGTCTCTCGTTTTGTTCGCAAATGGGTGCCGTTTAAAGACCTCCCTCACTCGTGTCTCCTCCTCCCAAAGTTTCCCCACCGTCCCCGTCACCGTCAAGGACTACGAGTTTCTTGATGGTTCTACTGAGGTGGAATTGAGATTACAGCTGGGGGGACGAAACATCACAAACTCCAGAGACATTTTTGTGGATGCAAATGGCTCCTCTTTAATAATAAAAGTACAGCACTCTGGGTCTTTTGTCACACTTATGGAAACTAATCAACTGTTTGATAAAATAAAGCCTGCTGAAACAATATGGTATATAGATGAAGATCAGCTAGTAATAAACTTGAAGAAGCAGGATCCAGATTTGAAATGGCCTGACATTATTGAGTCCTGGGAGTCTTTGACCGTTGTATCTATGCAACTTCTGAAAGGAACGTCAATTTACATTGTTGGCGATTCAACTGAAATCAACCAGAAAGTGGCTCAAGAACTTGCGGTTGGTCTTGGATATACACCACTCACTACGAAGGAGTTGCTGGAAGCATTTGCCAAGCAGAGTGTTGATTCATGGCTGCTTGCTGAAGGTTCTGAATCTGTAGTAGAAGCAGAAAGTGCTATATTAGAAAGTTTAAGTAGTCATGCAAGGGCAGTAATTGGTACATTAGGAGGCCAGCATGGAGCTGCTGGAAGAGCTCATAAATGGCGCCATCTTTATGCAGGATTTACTATCTGGCTGTCACAAACTGATGCTACAGATGAAGATTCTGCAAAGGAAGAGGCCAGGAGTCATATCCAAGATGGTAGAGTAGCTTACTCAAATGCAGACGTTGTTGTCAAGCTACAGGGTTGGGATGTAGATCATGTAAAAACTGTGGCTCAGGCATGCTTGAGTGCACTTAAACAATTAGTTCTGTCAGACAAGAAGCTTCCAGGTAAGAAGAGCCTCTACATACGCTTGGGATGCCGAGGTGACTGGCCAAACATCAAACCTCCTGGGTGGGATCCCTCAGCTGGAGATGATGCATCTCCGGGTGGATTTCAATAA

Protein Analysis

381

Amino Acids

41.59

Weight (kDa)

5.59

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 932
AccB1I GGYRCC 2 cut(s) 141, 804
AccB7I CCANNNNNTGG 1 cut(s) 580
AciI CCGC 2 cut(s) 6, 596
AclWI GGATC 4 cut(s) 452, 465, 1097, 1110
AcoI YGGCCR 2 cut(s) 3, 1076
AcuI CTGAAG 1 cut(s) 702
AcyI GRCGYC 1 cut(s) 805
AfaI GTAC 2 cut(s) 336, 760
AfiI CCNNNNNNNGG 3 cut(s) 63, 580, 1112
AgsI TTSAA 6 cut(s) 24, 62, 448, 469, 561, 1142
AjnI CCWGG 4 cut(s) 491, 881, 1030, 1093
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AluBI AGCT 8 cut(s) 262, 433, 782, 794, 911, 940, 1027, 1112
AluI AGCT 8 cut(s) 262, 433, 782, 794, 911, 940, 1027, 1112
Alw21I GWGCWC 2 cut(s) 796, 997
Alw26I GTCTC 3 cut(s) 123, 175, 285
Alw44I GTGCAC 1 cut(s) 993
AlwI GGATC 4 cut(s) 452, 465, 1097, 1110
AoxI GGCC 5 cut(s) 3, 473, 769, 879, 1076
ApaLI GTGCAC 1 cut(s) 993
ApeKI GCWGC 2 cut(s) 673, 782
ArsI GACNNNNNNTTYG 2 cut(s) 72, 104
AspLEI GCGC 1 cut(s) 807
AsuC2I CCSGG 1 cut(s) 1131
AsuHPI GGTGA 3 cut(s) 82, 196, 1082
BaeGI GKGCMC 1 cut(s) 997
BaeI ACNNNNGTAYC 2 cut(s) 495, 528
BalI TGGCCA 1 cut(s) 1078
BamHI GGATCC 2 cut(s) 457, 1102
BanI GGYRCC 2 cut(s) 141, 804
BanII GRGCYC 1 cut(s) 796
BarI GAAGNNNNNNTAC 2 cut(s) 1031, 1063
BauI CACGAG 1 cut(s) 165
Bbv12I GWGCWC 2 cut(s) 796, 997
BbvCI CCTCAGC 1 cut(s) 1108
BbvI GCAGC 2 cut(s) 660, 769
BccI CCATC 3 cut(s) 224, 816, 893
BceAI ACGGC 1 cut(s) 129
BcgI CGANNNNNNTGC 2 cut(s) 616, 650
BciT130I CCWGG 4 cut(s) 493, 883, 1032, 1095
BcnI CCSGG 1 cut(s) 1131
BcoDI GTCTC 3 cut(s) 123, 175, 285
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 3 cut(s) 696, 852, 941
BfoI RGCGCY 1 cut(s) 808
BisI GCNGC 3 cut(s) 6, 674, 783
BlsI GCNGC 3 cut(s) 7, 675, 784
Bme1390I CCNGG 5 cut(s) 493, 883, 1032, 1095, 1131
BmiI GGNNCC 5 cut(s) 143, 316, 459, 806, 1104
BmrFI CCNGG 5 cut(s) 493, 883, 1032, 1095, 1131
BmsI GCATC 5 cut(s) 295, 838, 1052, 1111, 1133
BpmI CTGGAG 2 cut(s) 271, 1134
Bpu10I CCTNAGC 2 cut(s) 978, 1108
BpuEI CTTGAG 3 cut(s) 55, 570, 1009
BpuMI CCSGG 1 cut(s) 1131
BsaBI GATNNNNATC 2 cut(s) 426, 957
BsaHI GRCGYC 1 cut(s) 805
BsaJI CCNNGG 3 cut(s) 492, 1066, 1094
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 580, 1112
Bse1I ACTGG 1 cut(s) 1079
Bse8I GATNNNNATC 2 cut(s) 426, 957
BseBI CCWGG 4 cut(s) 493, 883, 1032, 1095
BseDI CCNNGG 3 cut(s) 492, 1066, 1094
BseGI GGATG 3 cut(s) 310, 958, 1067
BseJI GATNNNNATC 2 cut(s) 426, 957
BseLI CCNNNNNNNGG 3 cut(s) 63, 580, 1112
BseMII CTCAG 3 cut(s) 231, 992, 1122
BseNI ACTGG 1 cut(s) 1079
BseRI GAGGAG 3 cut(s) 163, 166, 307
BseSI GKGCMC 1 cut(s) 997
BseXI GCAGC 2 cut(s) 660, 769
BseYI CCCAGC 1 cut(s) 262
BshFI GGCC 5 cut(s) 5, 475, 771, 881, 1078
BshNI GGYRCC 2 cut(s) 141, 804
BsiHKAI GWGCWC 2 cut(s) 796, 997
BsiSI CCGG 1 cut(s) 1130
BslFI GGGAC 2 cut(s) 182, 282
BslI CCNNNNNNNGG 3 cut(s) 63, 580, 1112
BsmAI GTCTC 3 cut(s) 123, 175, 285
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 2 cut(s) 182, 282
BsnI GGCC 5 cut(s) 5, 475, 771, 881, 1078
Bsp1286I GDGCHC 2 cut(s) 796, 997
Bsp143I GATC 4 cut(s) 427, 457, 958, 1102
BspACI CCGC 2 cut(s) 6, 596
BspANI GGCC 5 cut(s) 5, 475, 771, 881, 1078
BspCNI CTCAG 3 cut(s) 232, 991, 1121
BspLI GGNNCC 5 cut(s) 143, 316, 459, 806, 1104
BspPI GGATC 4 cut(s) 452, 465, 1097, 1110
BspQI GCTCTTC 2 cut(s) 784, 1034
BspT107I GGYRCC 2 cut(s) 141, 804
BsrI ACTGG 1 cut(s) 1079
BssECI CCNNGG 3 cut(s) 492, 1066, 1094
BssMI GATC 4 cut(s) 427, 457, 958, 1102
BssNI GRCGYC 1 cut(s) 805
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 4 cut(s) 493, 883, 1032, 1095
Bst4CI ACNGT 6 cut(s) 88, 196, 208, 381, 508, 973
Bst6I CTCTTC 4 cut(s) 58, 784, 870, 1034
BstACI GRCGYC 1 cut(s) 805
BstAPI GCANNNNNTGC 1 cut(s) 713
BstC8I GCNNGC 4 cut(s) 399, 678, 773, 985
BstDEI CTNAG 3 cut(s) 240, 978, 1108
BstF5I GGATG 3 cut(s) 310, 958, 1067
BstH2I RGCGCY 1 cut(s) 808
BstHHI GCGC 1 cut(s) 807
BstKTI GATC 4 cut(s) 430, 460, 961, 1105
BstMAI GTCTC 3 cut(s) 123, 175, 285
BstMBI GATC 4 cut(s) 427, 457, 958, 1102
BstMWI GCNNNNNNNGC 3 cut(s) 713, 791, 1062
BstNI CCWGG 4 cut(s) 493, 883, 1032, 1095
BstNSI RCATGY 1 cut(s) 987
BstSCI CCNGG 5 cut(s) 491, 881, 1030, 1093, 1129
BstSFI CTRYAG 3 cut(s) 696, 852, 941
BstSLI GKGCMC 1 cut(s) 997
BstV1I GCAGC 2 cut(s) 660, 769
BstX2I RGATCY 2 cut(s) 457, 1102
BstYI RGATCY 2 cut(s) 457, 1102
BsuRI GGCC 5 cut(s) 5, 475, 771, 881, 1078
BtsCI GGATG 3 cut(s) 310, 958, 1067
Cac8I GCNNGC 4 cut(s) 399, 678, 773, 985
CfoI GCGC 1 cut(s) 807
Csp6I GTAC 2 cut(s) 335, 759
CviAII CATG 5 cut(s) 669, 740, 776, 962, 984
CviQI GTAC 2 cut(s) 335, 759
DdeI CTNAG 3 cut(s) 240, 978, 1108
DinI GGCGCC 1 cut(s) 806
DpnI GATC 4 cut(s) 429, 459, 960, 1104
DpnII GATC 4 cut(s) 427, 457, 958, 1102
DraI TTTAAA 1 cut(s) 150
DrdI GACNNNNNNGTC 1 cut(s) 932
DseDI GACNNNNNNGTC 1 cut(s) 932
EaeI YGGCCR 2 cut(s) 3, 1076
Eam1104I CTCTTC 4 cut(s) 58, 784, 870, 1034
EarI CTCTTC 4 cut(s) 58, 784, 870, 1034
Ecl136II GAGCTC 1 cut(s) 794
Eco24I GRGCYC 1 cut(s) 796
Eco53kI GAGCTC 1 cut(s) 794
Eco57I CTGAAG 1 cut(s) 702
EcoICRI GAGCTC 1 cut(s) 794
EcoRII CCWGG 4 cut(s) 491, 881, 1030, 1093
EcoT22I ATGCAT 1 cut(s) 1126
EcoT38I GRGCYC 1 cut(s) 796
EgeI GGCGCC 1 cut(s) 806
EheI GGCGCC 1 cut(s) 806
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 5 cut(s) 672, 743, 779, 965, 987
FaqI GGGAC 2 cut(s) 182, 282
FatI CATG 5 cut(s) 668, 739, 775, 961, 983
Fnu4HI GCNGC 3 cut(s) 6, 674, 783
FokI GGATG 3 cut(s) 317, 965, 1074
FriOI GRGCYC 1 cut(s) 796
Fsp4HI GCNGC 3 cut(s) 6, 674, 783
FspBI CTAG 1 cut(s) 434
GlaI GCGC 1 cut(s) 806
GluI GCNGC 3 cut(s) 6, 674, 783
GsaI CCCAGC 1 cut(s) 266
GsuI CTGGAG 2 cut(s) 271, 1134
HaeII RGCGCY 1 cut(s) 808
HaeIII GGCC 5 cut(s) 5, 475, 771, 881, 1078
HapII CCGG 1 cut(s) 1130
HhaI GCGC 1 cut(s) 807
Hin1I GRCGYC 1 cut(s) 805
Hin1II CATG 5 cut(s) 672, 743, 779, 965, 987
Hin6I GCGC 1 cut(s) 805
HinP1I GCGC 1 cut(s) 805
HindIII AAGCTT 1 cut(s) 1025
HinfI GANTC 7 cut(s) 488, 497, 557, 665, 692, 863, 886
HpaII CCGG 1 cut(s) 1130
HphI GGTGA 3 cut(s) 82, 196, 1082
Hpy166II GTNNAC 1 cut(s) 995
Hpy188I TCNGA 3 cut(s) 528, 691, 1018
Hpy188III TCNNGA 5 cut(s) 72, 227, 288, 461, 587
Hpy8I GTNNAC 1 cut(s) 995
HpyAV CCTTC 3 cut(s) 68, 622, 677
HpyCH4III ACNGT 6 cut(s) 88, 196, 208, 381, 508, 973
HpyCH4IV ACGT 2 cut(s) 536, 927
HpyCH4V TGCA 9 cut(s) 46, 308, 520, 743, 818, 869, 923, 995, 1124
HpyF10VI GCNNNNNNNGC 3 cut(s) 713, 791, 1062
HpyF3I CTNAG 3 cut(s) 240, 978, 1108
HpySE526I ACGT 2 cut(s) 536, 927
Hsp92I GRCGYC 1 cut(s) 805
Hsp92II CATG 5 cut(s) 672, 743, 779, 965, 987
HspAI GCGC 1 cut(s) 805
KasI GGCGCC 1 cut(s) 804
Kzo9I GATC 4 cut(s) 427, 457, 958, 1102
LguI GCTCTTC 2 cut(s) 784, 1034
LmnI GCTCC 2 cut(s) 320, 779
Lsp1109I GCAGC 2 cut(s) 660, 769
LweI GCATC 5 cut(s) 295, 838, 1052, 1111, 1133
MaeI CTAG 1 cut(s) 434
MaeII ACGT 2 cut(s) 536, 927
MaeIII GTNAC 5 cut(s) 88, 202, 355, 837, 1070
MalI GATC 4 cut(s) 429, 459, 960, 1104
MboI GATC 4 cut(s) 427, 457, 958, 1102
MboII GAAGA 7 cut(s) 45, 437, 460, 801, 872, 887, 1051
MflI RGATCY 2 cut(s) 457, 1102
MhlI GDGCHC 2 cut(s) 796, 997
MlsI TGGCCA 1 cut(s) 1078
MluCI AATT 4 cut(s) 248, 540, 753, 1004
MluNI TGGCCA 1 cut(s) 1078
Mly113I GGCGCC 1 cut(s) 805
MlyI GAGTC 3 cut(s) 497, 506, 895
Mox20I TGGCCA 1 cut(s) 1078
Mph1103I ATGCAT 1 cut(s) 1126
MscI TGGCCA 1 cut(s) 1078
MseI TTAA 5 cut(s) 32, 149, 323, 731, 999
MslI CAYNNNNRTG 3 cut(s) 299, 362, 813
Msp20I TGGCCA 1 cut(s) 1078
MspA1I CMGCKG 2 cut(s) 262, 1112
MspI CCGG 1 cut(s) 1130
MspR9I CCNGG 5 cut(s) 493, 883, 1032, 1095, 1131
MvaI CCWGG 4 cut(s) 493, 883, 1032, 1095
MwoI GCNNNNNNNGC 3 cut(s) 713, 791, 1062
NarI GGCGCC 1 cut(s) 805
NciI CCSGG 1 cut(s) 1131
NdeII GATC 4 cut(s) 427, 457, 958, 1102
NlaIII CATG 5 cut(s) 672, 743, 779, 965, 987
NlaIV GGNNCC 5 cut(s) 143, 316, 459, 806, 1104
NmeAIII GCCGAG 1 cut(s) 1091
NmuCI GTSAC 5 cut(s) 88, 202, 355, 837, 1070
NsiI ATGCAT 1 cut(s) 1126
NspI RCATGY 1 cut(s) 987
PaeI GCATGC 1 cut(s) 987
PciSI GCTCTTC 2 cut(s) 784, 1034
PfeI GAWTC 4 cut(s) 557, 665, 692, 863
PflMI CCANNNNNTGG 1 cut(s) 580
PkrI GCNGC 3 cut(s) 7, 675, 784
PleI GAGTC 3 cut(s) 496, 505, 894
PluTI GGCGCC 1 cut(s) 808
PpsI GAGTC 3 cut(s) 496, 505, 894
Psp124BI GAGCTC 1 cut(s) 796
Psp6I CCWGG 4 cut(s) 491, 881, 1030, 1093
PspFI CCCAGC 1 cut(s) 262
PspGI CCWGG 4 cut(s) 491, 881, 1030, 1093
PspN4I GGNNCC 5 cut(s) 143, 316, 459, 806, 1104
PsuI RGATCY 2 cut(s) 457, 1102
PvuII CAGCTG 2 cut(s) 262, 1112
RsaI GTAC 2 cut(s) 336, 760
RsaNI GTAC 2 cut(s) 335, 759
RseI CAYNNNNRTG 3 cut(s) 299, 362, 813
SacI GAGCTC 1 cut(s) 796
SapI GCTCTTC 2 cut(s) 784, 1034
SaqAI TTAA 5 cut(s) 32, 149, 323, 731, 999
SatI GCNGC 3 cut(s) 6, 674, 783
Sau3AI GATC 4 cut(s) 427, 457, 958, 1102
SchI GAGTC 3 cut(s) 497, 506, 895
ScrFI CCNGG 5 cut(s) 493, 883, 1032, 1095, 1131
SduI GDGCHC 2 cut(s) 796, 997
SfaNI GCATC 5 cut(s) 295, 838, 1052, 1111, 1133
SfcI CTRYAG 3 cut(s) 696, 852, 941
SfoI GGCGCC 1 cut(s) 806
SmiMI CAYNNNNRTG 3 cut(s) 299, 362, 813
SmlI CTYRAG 3 cut(s) 70, 585, 988
SmoI CTYRAG 3 cut(s) 70, 585, 988
SphI GCATGC 1 cut(s) 987
Sse9I AATT 4 cut(s) 248, 540, 753, 1004
SsiI CCGC 2 cut(s) 6, 596
SspDI GGCGCC 1 cut(s) 804
SspMI CTAG 1 cut(s) 434
SstI GAGCTC 1 cut(s) 796
StyD4I CCNGG 5 cut(s) 491, 881, 1030, 1093, 1129
TaaI ACNGT 6 cut(s) 88, 196, 208, 381, 508, 973
TaiI ACGT 2 cut(s) 539, 930
TasI AATT 4 cut(s) 248, 540, 753, 1004
TatI WGTACW 1 cut(s) 334
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 557, 665, 692, 863
Tru1I TTAA 5 cut(s) 32, 149, 323, 731, 999
Tru9I TTAA 5 cut(s) 32, 149, 323, 731, 999
TseFI GTSAC 5 cut(s) 88, 202, 355, 837, 1070
TseI GCWGC 2 cut(s) 673, 782
Tsp45I GTSAC 5 cut(s) 88, 202, 355, 837, 1070
TspDTI ATGAA 3 cut(s) 438, 657, 873
TspGWI ACGGA 1 cut(s) 105
Van91I CCANNNNNTGG 1 cut(s) 580
VneI GTGCAC 1 cut(s) 993
XceI RCATGY 1 cut(s) 987
XcmI CCANNNNNNNNNTGG 1 cut(s) 468
XspI CTAG 1 cut(s) 434
Zsp2I ATGCAT 1 cut(s) 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.