Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 932 |
| AccB1I | GGYRCC | 2 cut(s) | 141, 804 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 580 |
| AciI | CCGC | 2 cut(s) | 6, 596 |
| AclWI | GGATC | 4 cut(s) | 452, 465, 1097, 1110 |
| AcoI | YGGCCR | 2 cut(s) | 3, 1076 |
| AcuI | CTGAAG | 1 cut(s) | 702 |
| AcyI | GRCGYC | 1 cut(s) | 805 |
| AfaI | GTAC | 2 cut(s) | 336, 760 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 63, 580, 1112 |
| AgsI | TTSAA | 6 cut(s) | 24, 62, 448, 469, 561, 1142 |
| AjnI | CCWGG | 4 cut(s) | 491, 881, 1030, 1093 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 582, 614 |
| AluBI | AGCT | 8 cut(s) | 262, 433, 782, 794, 911, 940, 1027, 1112 |
| AluI | AGCT | 8 cut(s) | 262, 433, 782, 794, 911, 940, 1027, 1112 |
| Alw21I | GWGCWC | 2 cut(s) | 796, 997 |
| Alw26I | GTCTC | 3 cut(s) | 123, 175, 285 |
| Alw44I | GTGCAC | 1 cut(s) | 993 |
| AlwI | GGATC | 4 cut(s) | 452, 465, 1097, 1110 |
| AoxI | GGCC | 5 cut(s) | 3, 473, 769, 879, 1076 |
| ApaLI | GTGCAC | 1 cut(s) | 993 |
| ApeKI | GCWGC | 2 cut(s) | 673, 782 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 72, 104 |
| AspLEI | GCGC | 1 cut(s) | 807 |
| AsuC2I | CCSGG | 1 cut(s) | 1131 |
| AsuHPI | GGTGA | 3 cut(s) | 82, 196, 1082 |
| BaeGI | GKGCMC | 1 cut(s) | 997 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 495, 528 |
| BalI | TGGCCA | 1 cut(s) | 1078 |
| BamHI | GGATCC | 2 cut(s) | 457, 1102 |
| BanI | GGYRCC | 2 cut(s) | 141, 804 |
| BanII | GRGCYC | 1 cut(s) | 796 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1031, 1063 |
| BauI | CACGAG | 1 cut(s) | 165 |
| Bbv12I | GWGCWC | 2 cut(s) | 796, 997 |
| BbvCI | CCTCAGC | 1 cut(s) | 1108 |
| BbvI | GCAGC | 2 cut(s) | 660, 769 |
| BccI | CCATC | 3 cut(s) | 224, 816, 893 |
| BceAI | ACGGC | 1 cut(s) | 129 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 616, 650 |
| BciT130I | CCWGG | 4 cut(s) | 493, 883, 1032, 1095 |
| BcnI | CCSGG | 1 cut(s) | 1131 |
| BcoDI | GTCTC | 3 cut(s) | 123, 175, 285 |
| BfaI | CTAG | 1 cut(s) | 434 |
| BfmI | CTRYAG | 3 cut(s) | 696, 852, 941 |
| BfoI | RGCGCY | 1 cut(s) | 808 |
| BisI | GCNGC | 3 cut(s) | 6, 674, 783 |
| BlsI | GCNGC | 3 cut(s) | 7, 675, 784 |
| Bme1390I | CCNGG | 5 cut(s) | 493, 883, 1032, 1095, 1131 |
| BmiI | GGNNCC | 5 cut(s) | 143, 316, 459, 806, 1104 |
| BmrFI | CCNGG | 5 cut(s) | 493, 883, 1032, 1095, 1131 |
| BmsI | GCATC | 5 cut(s) | 295, 838, 1052, 1111, 1133 |
| BpmI | CTGGAG | 2 cut(s) | 271, 1134 |
| Bpu10I | CCTNAGC | 2 cut(s) | 978, 1108 |
| BpuEI | CTTGAG | 3 cut(s) | 55, 570, 1009 |
| BpuMI | CCSGG | 1 cut(s) | 1131 |
| BsaBI | GATNNNNATC | 2 cut(s) | 426, 957 |
| BsaHI | GRCGYC | 1 cut(s) | 805 |
| BsaJI | CCNNGG | 3 cut(s) | 492, 1066, 1094 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 63, 580, 1112 |
| Bse1I | ACTGG | 1 cut(s) | 1079 |
| Bse8I | GATNNNNATC | 2 cut(s) | 426, 957 |
| BseBI | CCWGG | 4 cut(s) | 493, 883, 1032, 1095 |
| BseDI | CCNNGG | 3 cut(s) | 492, 1066, 1094 |
| BseGI | GGATG | 3 cut(s) | 310, 958, 1067 |
| BseJI | GATNNNNATC | 2 cut(s) | 426, 957 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 63, 580, 1112 |
| BseMII | CTCAG | 3 cut(s) | 231, 992, 1122 |
| BseNI | ACTGG | 1 cut(s) | 1079 |
| BseRI | GAGGAG | 3 cut(s) | 163, 166, 307 |
| BseSI | GKGCMC | 1 cut(s) | 997 |
| BseXI | GCAGC | 2 cut(s) | 660, 769 |
| BseYI | CCCAGC | 1 cut(s) | 262 |
| BshFI | GGCC | 5 cut(s) | 5, 475, 771, 881, 1078 |
| BshNI | GGYRCC | 2 cut(s) | 141, 804 |
| BsiHKAI | GWGCWC | 2 cut(s) | 796, 997 |
| BsiSI | CCGG | 1 cut(s) | 1130 |
| BslFI | GGGAC | 2 cut(s) | 182, 282 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 63, 580, 1112 |
| BsmAI | GTCTC | 3 cut(s) | 123, 175, 285 |
| BsmBI | CGTCTC | 1 cut(s) | 123 |
| BsmFI | GGGAC | 2 cut(s) | 182, 282 |
| BsnI | GGCC | 5 cut(s) | 5, 475, 771, 881, 1078 |
| Bsp1286I | GDGCHC | 2 cut(s) | 796, 997 |
| Bsp143I | GATC | 4 cut(s) | 427, 457, 958, 1102 |
| BspACI | CCGC | 2 cut(s) | 6, 596 |
| BspANI | GGCC | 5 cut(s) | 5, 475, 771, 881, 1078 |
| BspCNI | CTCAG | 3 cut(s) | 232, 991, 1121 |
| BspLI | GGNNCC | 5 cut(s) | 143, 316, 459, 806, 1104 |
| BspPI | GGATC | 4 cut(s) | 452, 465, 1097, 1110 |
| BspQI | GCTCTTC | 2 cut(s) | 784, 1034 |
| BspT107I | GGYRCC | 2 cut(s) | 141, 804 |
| BsrI | ACTGG | 1 cut(s) | 1079 |
| BssECI | CCNNGG | 3 cut(s) | 492, 1066, 1094 |
| BssMI | GATC | 4 cut(s) | 427, 457, 958, 1102 |
| BssNI | GRCGYC | 1 cut(s) | 805 |
| BssSI | CACGAG | 1 cut(s) | 165 |
| Bst2BI | CACGAG | 1 cut(s) | 165 |
| Bst2UI | CCWGG | 4 cut(s) | 493, 883, 1032, 1095 |
| Bst4CI | ACNGT | 6 cut(s) | 88, 196, 208, 381, 508, 973 |
| Bst6I | CTCTTC | 4 cut(s) | 58, 784, 870, 1034 |
| BstACI | GRCGYC | 1 cut(s) | 805 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 713 |
| BstC8I | GCNNGC | 4 cut(s) | 399, 678, 773, 985 |
| BstDEI | CTNAG | 3 cut(s) | 240, 978, 1108 |
| BstF5I | GGATG | 3 cut(s) | 310, 958, 1067 |
| BstH2I | RGCGCY | 1 cut(s) | 808 |
| BstHHI | GCGC | 1 cut(s) | 807 |
| BstKTI | GATC | 4 cut(s) | 430, 460, 961, 1105 |
| BstMAI | GTCTC | 3 cut(s) | 123, 175, 285 |
| BstMBI | GATC | 4 cut(s) | 427, 457, 958, 1102 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 713, 791, 1062 |
| BstNI | CCWGG | 4 cut(s) | 493, 883, 1032, 1095 |
| BstNSI | RCATGY | 1 cut(s) | 987 |
| BstSCI | CCNGG | 5 cut(s) | 491, 881, 1030, 1093, 1129 |
| BstSFI | CTRYAG | 3 cut(s) | 696, 852, 941 |
| BstSLI | GKGCMC | 1 cut(s) | 997 |
| BstV1I | GCAGC | 2 cut(s) | 660, 769 |
| BstX2I | RGATCY | 2 cut(s) | 457, 1102 |
| BstYI | RGATCY | 2 cut(s) | 457, 1102 |
| BsuRI | GGCC | 5 cut(s) | 5, 475, 771, 881, 1078 |
| BtsCI | GGATG | 3 cut(s) | 310, 958, 1067 |
| Cac8I | GCNNGC | 4 cut(s) | 399, 678, 773, 985 |
| CfoI | GCGC | 1 cut(s) | 807 |
| Csp6I | GTAC | 2 cut(s) | 335, 759 |
| CviAII | CATG | 5 cut(s) | 669, 740, 776, 962, 984 |
| CviQI | GTAC | 2 cut(s) | 335, 759 |
| DdeI | CTNAG | 3 cut(s) | 240, 978, 1108 |
| DinI | GGCGCC | 1 cut(s) | 806 |
| DpnI | GATC | 4 cut(s) | 429, 459, 960, 1104 |
| DpnII | GATC | 4 cut(s) | 427, 457, 958, 1102 |
| DraI | TTTAAA | 1 cut(s) | 150 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 932 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 932 |
| EaeI | YGGCCR | 2 cut(s) | 3, 1076 |
| Eam1104I | CTCTTC | 4 cut(s) | 58, 784, 870, 1034 |
| EarI | CTCTTC | 4 cut(s) | 58, 784, 870, 1034 |
| Ecl136II | GAGCTC | 1 cut(s) | 794 |
| Eco24I | GRGCYC | 1 cut(s) | 796 |
| Eco53kI | GAGCTC | 1 cut(s) | 794 |
| Eco57I | CTGAAG | 1 cut(s) | 702 |
| EcoICRI | GAGCTC | 1 cut(s) | 794 |
| EcoRII | CCWGG | 4 cut(s) | 491, 881, 1030, 1093 |
| EcoT22I | ATGCAT | 1 cut(s) | 1126 |
| EcoT38I | GRGCYC | 1 cut(s) | 796 |
| EgeI | GGCGCC | 1 cut(s) | 806 |
| EheI | GGCGCC | 1 cut(s) | 806 |
| Esp3I | CGTCTC | 1 cut(s) | 123 |
| FaeI | CATG | 5 cut(s) | 672, 743, 779, 965, 987 |
| FaqI | GGGAC | 2 cut(s) | 182, 282 |
| FatI | CATG | 5 cut(s) | 668, 739, 775, 961, 983 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 674, 783 |
| FokI | GGATG | 3 cut(s) | 317, 965, 1074 |
| FriOI | GRGCYC | 1 cut(s) | 796 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 674, 783 |
| FspBI | CTAG | 1 cut(s) | 434 |
| GlaI | GCGC | 1 cut(s) | 806 |
| GluI | GCNGC | 3 cut(s) | 6, 674, 783 |
| GsaI | CCCAGC | 1 cut(s) | 266 |
| GsuI | CTGGAG | 2 cut(s) | 271, 1134 |
| HaeII | RGCGCY | 1 cut(s) | 808 |
| HaeIII | GGCC | 5 cut(s) | 5, 475, 771, 881, 1078 |
| HapII | CCGG | 1 cut(s) | 1130 |
| HhaI | GCGC | 1 cut(s) | 807 |
| Hin1I | GRCGYC | 1 cut(s) | 805 |
| Hin1II | CATG | 5 cut(s) | 672, 743, 779, 965, 987 |
| Hin6I | GCGC | 1 cut(s) | 805 |
| HinP1I | GCGC | 1 cut(s) | 805 |
| HindIII | AAGCTT | 1 cut(s) | 1025 |
| HinfI | GANTC | 7 cut(s) | 488, 497, 557, 665, 692, 863, 886 |
| HpaII | CCGG | 1 cut(s) | 1130 |
| HphI | GGTGA | 3 cut(s) | 82, 196, 1082 |
| Hpy166II | GTNNAC | 1 cut(s) | 995 |
| Hpy188I | TCNGA | 3 cut(s) | 528, 691, 1018 |
| Hpy188III | TCNNGA | 5 cut(s) | 72, 227, 288, 461, 587 |
| Hpy8I | GTNNAC | 1 cut(s) | 995 |
| HpyAV | CCTTC | 3 cut(s) | 68, 622, 677 |
| HpyCH4III | ACNGT | 6 cut(s) | 88, 196, 208, 381, 508, 973 |
| HpyCH4IV | ACGT | 2 cut(s) | 536, 927 |
| HpyCH4V | TGCA | 9 cut(s) | 46, 308, 520, 743, 818, 869, 923, 995, 1124 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 713, 791, 1062 |
| HpyF3I | CTNAG | 3 cut(s) | 240, 978, 1108 |
| HpySE526I | ACGT | 2 cut(s) | 536, 927 |
| Hsp92I | GRCGYC | 1 cut(s) | 805 |
| Hsp92II | CATG | 5 cut(s) | 672, 743, 779, 965, 987 |
| HspAI | GCGC | 1 cut(s) | 805 |
| KasI | GGCGCC | 1 cut(s) | 804 |
| Kzo9I | GATC | 4 cut(s) | 427, 457, 958, 1102 |
| LguI | GCTCTTC | 2 cut(s) | 784, 1034 |
| LmnI | GCTCC | 2 cut(s) | 320, 779 |
| Lsp1109I | GCAGC | 2 cut(s) | 660, 769 |
| LweI | GCATC | 5 cut(s) | 295, 838, 1052, 1111, 1133 |
| MaeI | CTAG | 1 cut(s) | 434 |
| MaeII | ACGT | 2 cut(s) | 536, 927 |
| MaeIII | GTNAC | 5 cut(s) | 88, 202, 355, 837, 1070 |
| MalI | GATC | 4 cut(s) | 429, 459, 960, 1104 |
| MboI | GATC | 4 cut(s) | 427, 457, 958, 1102 |
| MboII | GAAGA | 7 cut(s) | 45, 437, 460, 801, 872, 887, 1051 |
| MflI | RGATCY | 2 cut(s) | 457, 1102 |
| MhlI | GDGCHC | 2 cut(s) | 796, 997 |
| MlsI | TGGCCA | 1 cut(s) | 1078 |
| MluCI | AATT | 4 cut(s) | 248, 540, 753, 1004 |
| MluNI | TGGCCA | 1 cut(s) | 1078 |
| Mly113I | GGCGCC | 1 cut(s) | 805 |
| MlyI | GAGTC | 3 cut(s) | 497, 506, 895 |
| Mox20I | TGGCCA | 1 cut(s) | 1078 |
| Mph1103I | ATGCAT | 1 cut(s) | 1126 |
| MscI | TGGCCA | 1 cut(s) | 1078 |
| MseI | TTAA | 5 cut(s) | 32, 149, 323, 731, 999 |
| MslI | CAYNNNNRTG | 3 cut(s) | 299, 362, 813 |
| Msp20I | TGGCCA | 1 cut(s) | 1078 |
| MspA1I | CMGCKG | 2 cut(s) | 262, 1112 |
| MspI | CCGG | 1 cut(s) | 1130 |
| MspR9I | CCNGG | 5 cut(s) | 493, 883, 1032, 1095, 1131 |
| MvaI | CCWGG | 4 cut(s) | 493, 883, 1032, 1095 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 713, 791, 1062 |
| NarI | GGCGCC | 1 cut(s) | 805 |
| NciI | CCSGG | 1 cut(s) | 1131 |
| NdeII | GATC | 4 cut(s) | 427, 457, 958, 1102 |
| NlaIII | CATG | 5 cut(s) | 672, 743, 779, 965, 987 |
| NlaIV | GGNNCC | 5 cut(s) | 143, 316, 459, 806, 1104 |
| NmeAIII | GCCGAG | 1 cut(s) | 1091 |
| NmuCI | GTSAC | 5 cut(s) | 88, 202, 355, 837, 1070 |
| NsiI | ATGCAT | 1 cut(s) | 1126 |
| NspI | RCATGY | 1 cut(s) | 987 |
| PaeI | GCATGC | 1 cut(s) | 987 |
| PciSI | GCTCTTC | 2 cut(s) | 784, 1034 |
| PfeI | GAWTC | 4 cut(s) | 557, 665, 692, 863 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 580 |
| PkrI | GCNGC | 3 cut(s) | 7, 675, 784 |
| PleI | GAGTC | 3 cut(s) | 496, 505, 894 |
| PluTI | GGCGCC | 1 cut(s) | 808 |
| PpsI | GAGTC | 3 cut(s) | 496, 505, 894 |
| Psp124BI | GAGCTC | 1 cut(s) | 796 |
| Psp6I | CCWGG | 4 cut(s) | 491, 881, 1030, 1093 |
| PspFI | CCCAGC | 1 cut(s) | 262 |
| PspGI | CCWGG | 4 cut(s) | 491, 881, 1030, 1093 |
| PspN4I | GGNNCC | 5 cut(s) | 143, 316, 459, 806, 1104 |
| PsuI | RGATCY | 2 cut(s) | 457, 1102 |
| PvuII | CAGCTG | 2 cut(s) | 262, 1112 |
| RsaI | GTAC | 2 cut(s) | 336, 760 |
| RsaNI | GTAC | 2 cut(s) | 335, 759 |
| RseI | CAYNNNNRTG | 3 cut(s) | 299, 362, 813 |
| SacI | GAGCTC | 1 cut(s) | 796 |
| SapI | GCTCTTC | 2 cut(s) | 784, 1034 |
| SaqAI | TTAA | 5 cut(s) | 32, 149, 323, 731, 999 |
| SatI | GCNGC | 3 cut(s) | 6, 674, 783 |
| Sau3AI | GATC | 4 cut(s) | 427, 457, 958, 1102 |
| SchI | GAGTC | 3 cut(s) | 497, 506, 895 |
| ScrFI | CCNGG | 5 cut(s) | 493, 883, 1032, 1095, 1131 |
| SduI | GDGCHC | 2 cut(s) | 796, 997 |
| SfaNI | GCATC | 5 cut(s) | 295, 838, 1052, 1111, 1133 |
| SfcI | CTRYAG | 3 cut(s) | 696, 852, 941 |
| SfoI | GGCGCC | 1 cut(s) | 806 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 299, 362, 813 |
| SmlI | CTYRAG | 3 cut(s) | 70, 585, 988 |
| SmoI | CTYRAG | 3 cut(s) | 70, 585, 988 |
| SphI | GCATGC | 1 cut(s) | 987 |
| Sse9I | AATT | 4 cut(s) | 248, 540, 753, 1004 |
| SsiI | CCGC | 2 cut(s) | 6, 596 |
| SspDI | GGCGCC | 1 cut(s) | 804 |
| SspMI | CTAG | 1 cut(s) | 434 |
| SstI | GAGCTC | 1 cut(s) | 796 |
| StyD4I | CCNGG | 5 cut(s) | 491, 881, 1030, 1093, 1129 |
| TaaI | ACNGT | 6 cut(s) | 88, 196, 208, 381, 508, 973 |
| TaiI | ACGT | 2 cut(s) | 539, 930 |
| TasI | AATT | 4 cut(s) | 248, 540, 753, 1004 |
| TatI | WGTACW | 1 cut(s) | 334 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TfiI | GAWTC | 4 cut(s) | 557, 665, 692, 863 |
| Tru1I | TTAA | 5 cut(s) | 32, 149, 323, 731, 999 |
| Tru9I | TTAA | 5 cut(s) | 32, 149, 323, 731, 999 |
| TseFI | GTSAC | 5 cut(s) | 88, 202, 355, 837, 1070 |
| TseI | GCWGC | 2 cut(s) | 673, 782 |
| Tsp45I | GTSAC | 5 cut(s) | 88, 202, 355, 837, 1070 |
| TspDTI | ATGAA | 3 cut(s) | 438, 657, 873 |
| TspGWI | ACGGA | 1 cut(s) | 105 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 580 |
| VneI | GTGCAC | 1 cut(s) | 993 |
| XceI | RCATGY | 1 cut(s) | 987 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 468 |
| XspI | CTAG | 1 cut(s) | 434 |
| Zsp2I | ATGCAT | 1 cut(s) | 1126 |