Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

23198982 .. 23199302

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0162600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGCACGTGATGTACTATCAATTCCTATAACCTCTGTTGCTTCAGAATACGCCTTTAGTTCTGCTAAAAGGGTGCTTGATCCATTTAGAAGCTCTTTAACACCATCTATCACCGAGGCTTTGTTGTGCACCCAAGATTGGATTAAAGGTTCAACATTACCAATAACTGTTGAAGAAAGACTTGAAGATCTTGAGGCAATTGAGCAAGTTGTTCTTCGAGATATGGAAGCTTTATCAATTGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

82

Amino Acids

9.0

Weight (kDa)

4.39

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimer_Tnp_hAT	PF05699	1 - 48	2.1e-17	hAT family C-terminal dimerisation region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	27
AcvI	CACGTG	1 cut(s)	8
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	153, 173, 185
AloI	GAACNNNNNNTCC	2 cut(s)	133, 165
AluBI	AGCT	3 cut(s)	93, 230, 245
AluI	AGCT	3 cut(s)	93, 230, 245
Alw21I	GWGCWC	1 cut(s)	131
Alw44I	GTGCAC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	131
BbrPI	CACGTG	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	131
BccI	CCATC	1 cut(s)	112
BglII	AGATCT	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	79, 187
BspPI	GGATC	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	2 cut(s)	79, 187
Bst4CI	ACNGT	1 cut(s)	169
BstBAI	YACGTR	1 cut(s)	8
BstKTI	GATC	2 cut(s)	82, 190
BstMBI	GATC	2 cut(s)	79, 187
BstSLI	GKGCMC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	14
CviJI	RGCY	4 cut(s)	93, 119, 230, 245
CviKI_1	RGCY	4 cut(s)	93, 119, 230, 245
CviQI	GTAC	1 cut(s)	14
DpnI	GATC	2 cut(s)	81, 189
DpnII	GATC	2 cut(s)	79, 187
Eco57I	CTGAAG	1 cut(s)	27
Eco72I	CACGTG	1 cut(s)	8
FaiI	YATR	2 cut(s)	29, 224
FalI	AAGNNNNNCTT	4 cut(s)	165, 197, 198, 230
HindIII	AAGCTT	1 cut(s)	228
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	191, 218
Hpy8I	GTNNAC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	129
HpySE526I	ACGT	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	79, 187
LmnI	GCTCC	1 cut(s)	242
MaeII	ACGT	1 cut(s)	7
MalI	GATC	2 cut(s)	81, 189
MboI	GATC	2 cut(s)	79, 187
MboII	GAAGA	3 cut(s)	185, 197, 206
MfeI	CAATTG	2 cut(s)	198, 237
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	3 cut(s)	21, 198, 237
MnlI	CCTC	3 cut(s)	43, 109, 187
MseI	TTAA	3 cut(s)	98, 144, 247
MunI	CAATTG	2 cut(s)	198, 237
NdeII	GATC	2 cut(s)	79, 187
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	8
PspCI	CACGTG	1 cut(s)	8
PsuI	RGATCY	1 cut(s)	187
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	98, 144, 247
Sau3AI	GATC	2 cut(s)	79, 187
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	6 cut(s)	10, 35, 95, 151, 232, 247
SgeI	CNNG	9 cut(s)	18, 20, 89, 127, 146, 194, 203, 218, 230
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	21, 198, 237
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	217
TasI	AATT	3 cut(s)	21, 198, 237
TatI	WGTACW	1 cut(s)	13
Tru1I	TTAA	3 cut(s)	98, 144, 247
Tru9I	TTAA	3 cut(s)	98, 144, 247
VneI	GTGCAC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.