Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

24310878 .. 24313105

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0259300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGAAGCCTGTTTTTCACCCCATAATCTTTGTCAAGAAACCTCTGCAGCCACACTTCAGCAACACCTCCAGTTCATACTTCAAAACCGTCCTGAATTTTGGGTCTACTCCATTTTCTGGCAAGCCTCAAAAGACGGCCACAATGCCATTTCGTTATCATGGGCCGGTGGTCATTTCCGAGGGACCAGAGACTTCTCATCCAAAACATCAACCACTAATAAGCTGGATAACAATTACCAACCAACAATAGGGTTCGATCTGGGGACACCAAAGGGGATCAACAAAGAAGTCGAAGCTTTGTTCCATGAAGACATGAACATGGACGGACTGTTCGACATTAATGGAGATGTCACTGACTCGGAGTGGTTTTACTTCTACACCGTTTCCAATTTGACACAGTCCTTTGCTGCAGGCCTTGAGAGTAACAACATTCTTGGCCATGCATTTTGTTCTGGTGCTTTTGTTTGGTTGGCAGGCGACCACGAGCTTAAGTTCTATGAGTGTGAGAGAGTTAAAGAGGCCCGCATGCATGGAATTCAAACTCTTGTTTGTATTGCAACACCCTTTGGTGTGCTTGAACTGGCTTCTTTAGAAGTGATTAAACAAGACTGGGGTTTTGTGCAGCTTTGTAAGTCTATTTTTGGATCTGACCTAGTAACAACCACCGCCAGCGTCTCAAACTCAAAGCAGGGTCATGTTCATGTTCCTCAGTTACAAGATGGGATATTTTCAAGATCGGTTCAGAAGGAGTGGACCACACAAGGTGATATGAGAAAAACTGTCAACCTAAGTGGATCTTCATCTGATTCCGGGCCTTATGAAAGCACATCAAACACTAGATTAAAAGAGAGAAGATCTGATAAGCATGTCAATGCCAACCAAGATTCACCAATAAGCCATTCGAAGGCAGAGAGACAACGCCGGGATAAGCTTAATCATCTATTTTATGCCCTTAGGTCCGTTGTTCCTAATGTCTCAAAGATGGATAAAGCTTCGACACTATCTGATGCAATTGTATACATCAATAAATTGAAGACAACGATCGAGGAGTTGGAGGCCAAAATCCAAGCAAAACCCAAGAAACCCAAAGTAAGCATCATGATTGACAATATTCTTGATAGCCAAAGCACCAGCACTGCTATGGAGGTGGGTGTGGATGTGAAGATTGTAGGGTCGGAAGCCATAATCCGAGTTTGGTGTCCGAATCATCAGGATGATCCATGTGCTAGATTGATGAATGCACTCAGAGACCTTGAATTACAAATTCATCGTGCAAGCATATCTAGTGTGAATGAGTTGATACTTCAAGATGTTATGGTAAGAGTTCCTGATGGATTCGCAAGCGAGGAGGTCATCAAAACCGCAATTATTAATAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

460

Amino Acids

51.52

Weight (kDa)

6.03

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	19 - 214	1.2e-38	bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH	PF00010	299 - 345	1.1e-12	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	385 - 456	8.2e-09	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccI	GTMKAC	2 cut(s)	105, 1017
AciI	CCGC	3 cut(s)	523, 666, 1362
AclWI	GGATC	4 cut(s)	284, 652, 802, 1211
AcoI	YGGCCR	2 cut(s)	136, 436
AcsI	RAATTY	3 cut(s)	95, 534, 1263
AcuI	CTGAAG	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	764
AfiI	CCNNNNNNNGG	3 cut(s)	117, 248, 904
AflII	CTTAAG	1 cut(s)	488
AgsI	TTSAA	7 cut(s)	83, 539, 578, 732, 1033, 1256, 1307
AjuI	GAANNNNNNNTTGG	2 cut(s)	883, 915
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
AluBI	AGCT	6 cut(s)	223, 296, 487, 625, 931, 992
AluI	AGCT	6 cut(s)	223, 296, 487, 625, 931, 992
Alw26I	GTCTC	5 cut(s)	183, 679, 907, 979, 1242
AlwI	GGATC	4 cut(s)	284, 652, 802, 1211
AoxI	GGCC	7 cut(s)	136, 162, 412, 436, 519, 812, 1056
ApeKI	GCWGC	3 cut(s)	47, 407, 622
ApoI	RAATTY	3 cut(s)	95, 534, 1263
ArsI	GACNNNNNNTTYG	4 cut(s)	314, 346, 599, 631
AseI	ATTAAT	2 cut(s)	339, 1371
AspS9I	GGNCC	6 cut(s)	162, 183, 520, 753, 812, 957
AsuC2I	CCSGG	2 cut(s)	811, 923
AsuHPI	GGTGA	3 cut(s)	9, 776, 879
AsuII	TTCGAA	1 cut(s)	902
AvaII	GGWCC	3 cut(s)	183, 753, 957
AxyI	CCTNAGG	1 cut(s)	953
BalI	TGGCCA	1 cut(s)	438
BauI	CACGAG	1 cut(s)	482
BbsI	GAAGAC	2 cut(s)	315, 1040
BbvI	GCAGC	3 cut(s)	59, 394, 634
BccI	CCATC	3 cut(s)	713, 976, 1325
BceAI	ACGGC	1 cut(s)	151
BcnI	CCSGG	2 cut(s)	811, 923
BcoDI	GTCTC	5 cut(s)	183, 679, 907, 979, 1242
BfaI	CTAG	4 cut(s)	653, 837, 1227, 1284
BfmI	CTRYAG	2 cut(s)	45, 408
BfrI	CTTAAG	1 cut(s)	488
BglII	AGATCT	1 cut(s)	854
BisI	GCNGC	3 cut(s)	48, 408, 623
BlsI	GCNGC	3 cut(s)	49, 409, 624
Bme1390I	CCNGG	2 cut(s)	811, 923
Bme18I	GGWCC	3 cut(s)	183, 753, 957
BmgT120I	GGNCC	6 cut(s)	162, 183, 520, 753, 812, 957
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	2 cut(s)	811, 923
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	2 cut(s)	997, 1104
BmuI	ACTGGG	1 cut(s)	619
BpiI	GAAGAC	2 cut(s)	315, 1040
BpmI	CTGGAG	1 cut(s)	53
Bpu14I	TTCGAA	1 cut(s)	902
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	2 cut(s)	811, 923
BsaBI	GATNNNNATC	1 cut(s)	799
BsaI	GGTCTC	1 cut(s)	1242
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 248, 904
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	3 cut(s)	70, 585, 614
Bse21I	CCTNAGG	1 cut(s)	953
Bse8I	GATNNNNATC	1 cut(s)	799
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	3 cut(s)	197, 1162, 1219
BseJI	GATNNNNATC	1 cut(s)	799
BseLI	CCNNNNNNNGG	3 cut(s)	117, 248, 904
BseMII	CTCAG	2 cut(s)	722, 1258
BseNI	ACTGG	3 cut(s)	70, 585, 614
BseRI	GAGGAG	2 cut(s)	1061, 1361
BseXI	GCAGC	3 cut(s)	59, 394, 634
BsgI	GTGCAG	1 cut(s)	641
Bsh1285I	CGRYCG	1 cut(s)	1044
BshFI	GGCC	7 cut(s)	138, 164, 414, 438, 521, 814, 1058
BsiEI	CGRYCG	1 cut(s)	1044
BsiSI	CCGG	3 cut(s)	165, 810, 922
BslFI	GGGAC	2 cut(s)	196, 277
BslI	CCNNNNNNNGG	3 cut(s)	117, 248, 904
BsmAI	GTCTC	5 cut(s)	183, 679, 907, 979, 1242
BsmBI	CGTCTC	1 cut(s)	679
BsmFI	GGGAC	2 cut(s)	196, 277
BsmI	GAATGC	1 cut(s)	1243
BsnI	GGCC	7 cut(s)	138, 164, 414, 438, 521, 814, 1058
Bso31I	GGTCTC	1 cut(s)	1242
Bsp119I	TTCGAA	1 cut(s)	902
Bsp143I	GATC	8 cut(s)	256, 276, 644, 734, 794, 854, 1041, 1216
BspACI	CCGC	3 cut(s)	523, 666, 1362
BspANI	GGCC	7 cut(s)	138, 164, 414, 438, 521, 814, 1058
BspCNI	CTCAG	2 cut(s)	721, 1257
BspHI	TCATGA	1 cut(s)	1098
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	2 cut(s)	49, 412
BspPI	GGATC	4 cut(s)	284, 652, 802, 1211
BspT104I	TTCGAA	1 cut(s)	902
BspTI	CTTAAG	1 cut(s)	488
BspTNI	GGTCTC	1 cut(s)	1242
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	3 cut(s)	70, 585, 614
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	8 cut(s)	256, 276, 644, 734, 794, 854, 1041, 1216
BssNAI	GTATAC	1 cut(s)	1018
BssSI	CACGAG	1 cut(s)	482
Bst1107I	GTATAC	1 cut(s)	1018
Bst2BI	CACGAG	1 cut(s)	482
Bst4CI	ACNGT	5 cut(s)	89, 330, 382, 399, 781
BstAFI	CTTAAG	1 cut(s)	488
BstBI	TTCGAA	1 cut(s)	902
BstC8I	GCNNGC	8 cut(s)	123, 412, 475, 523, 527, 670, 1276, 1342
BstDEI	CTNAG	4 cut(s)	708, 788, 953, 1244
BstF5I	GGATG	3 cut(s)	197, 1162, 1219
BstKTI	GATC	8 cut(s)	259, 279, 647, 737, 797, 857, 1044, 1219
BstMAI	GTCTC	5 cut(s)	183, 679, 907, 979, 1242
BstMBI	GATC	8 cut(s)	256, 276, 644, 734, 794, 854, 1041, 1216
BstMCI	CGRYCG	1 cut(s)	1044
BstNSI	RCATGY	2 cut(s)	529, 869
BstSCI	CCNGG	2 cut(s)	809, 921
BstSFI	CTRYAG	2 cut(s)	45, 408
BstV1I	GCAGC	3 cut(s)	59, 394, 634
BstV2I	GAAGAC	2 cut(s)	315, 1040
BstX2I	RGATCY	3 cut(s)	644, 794, 854
BstYI	RGATCY	3 cut(s)	644, 794, 854
BstZ17I	GTATAC	1 cut(s)	1018
Bsu36I	CCTNAGG	1 cut(s)	953
BsuRI	GGCC	7 cut(s)	138, 164, 414, 438, 521, 814, 1058
BtsCI	GGATG	3 cut(s)	197, 1162, 1219
BtsI	GCAGTG	1 cut(s)	1134
BtsIMutI	CAGTG	2 cut(s)	351, 1134
Cac8I	GCNNGC	8 cut(s)	123, 412, 475, 523, 527, 670, 1276, 1342
CciI	TCATGA	1 cut(s)	1098
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	6 cut(s)	162, 183, 520, 753, 812, 957
CseI	GACGC	1 cut(s)	661
CspCI	CAANNNNNGTGG	2 cut(s)	772, 807
DdeI	CTNAG	4 cut(s)	708, 788, 953, 1244
DpnI	GATC	8 cut(s)	258, 278, 646, 736, 796, 856, 1043, 1218
DpnII	GATC	8 cut(s)	256, 276, 644, 734, 794, 854, 1041, 1216
DraIII	CACNNNGTG	1 cut(s)	764
EaeI	YGGCCR	2 cut(s)	136, 436
Eco147I	AGGCCT	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	1242
Eco47I	GGWCC	3 cut(s)	183, 753, 957
Eco57I	CTGAAG	1 cut(s)	41
Eco81I	CCTNAGG	1 cut(s)	953
EcoRI	GAATTC	1 cut(s)	534
EcoT22I	ATGCAT	2 cut(s)	445, 531
Esp3I	CGTCTC	1 cut(s)	679
FalI	AAGNNNNNCTT	2 cut(s)	781, 813
FaqI	GGGAC	2 cut(s)	196, 277
FauI	CCCGC	1 cut(s)	530
FblI	GTMKAC	2 cut(s)	105, 1017
Fnu4HI	GCNGC	3 cut(s)	48, 408, 623
FokI	GGATG	3 cut(s)	184, 1169, 1226
Fsp4HI	GCNGC	3 cut(s)	48, 408, 623
FspBI	CTAG	4 cut(s)	653, 837, 1227, 1284
GluI	GCNGC	3 cut(s)	48, 408, 623
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	7 cut(s)	138, 164, 414, 438, 521, 814, 1058
HapII	CCGG	3 cut(s)	165, 810, 922
HgaI	GACGC	1 cut(s)	661
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	3 cut(s)	294, 929, 990
HinfI	GANTC	5 cut(s)	356, 806, 884, 1204, 1335
HpaII	CCGG	3 cut(s)	165, 810, 922
HphI	GGTGA	3 cut(s)	9, 776, 879
Hpy166II	GTNNAC	4 cut(s)	106, 753, 784, 1018
Hpy188III	TCNNGA	8 cut(s)	35, 92, 732, 1099, 1115, 1211, 1307, 1328
Hpy8I	GTNNAC	4 cut(s)	106, 753, 784, 1018
HpyAV	CCTTC	2 cut(s)	739, 898
HpyCH4III	ACNGT	5 cut(s)	89, 330, 382, 399, 781
HpyCH4V	TGCA	9 cut(s)	47, 410, 443, 529, 557, 622, 1010, 1241, 1274
HpyF3I	CTNAG	4 cut(s)	708, 788, 953, 1244
Kzo9I	GATC	8 cut(s)	256, 276, 644, 734, 794, 854, 1041, 1216
Lsp1109I	GCAGC	3 cut(s)	59, 394, 634
LweI	GCATC	2 cut(s)	997, 1104
MaeI	CTAG	4 cut(s)	653, 837, 1227, 1284
MaeIII	GTNAC	4 cut(s)	349, 422, 655, 711
MalI	GATC	8 cut(s)	258, 278, 646, 736, 796, 856, 1043, 1218
MboI	GATC	8 cut(s)	256, 276, 644, 734, 794, 854, 1041, 1216
MboII	GAAGA	5 cut(s)	320, 789, 864, 1045, 1174
MfeI	CAATTG	1 cut(s)	1011
MflI	RGATCY	3 cut(s)	644, 794, 854
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	9 cut(s)	95, 232, 388, 534, 1011, 1028, 1256, 1263, 1365
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	1032, 1155
Mox20I	TGGCCA	1 cut(s)	438
Mph1103I	ATGCAT	2 cut(s)	445, 531
MscI	TGGCCA	1 cut(s)	438
MseI	TTAA	7 cut(s)	339, 489, 513, 600, 842, 933, 1371
MslI	CAYNNNNRTG	5 cut(s)	317, 699, 870, 1139, 1212
Msp20I	TGGCCA	1 cut(s)	438
MspCI	CTTAAG	1 cut(s)	488
MspI	CCGG	3 cut(s)	165, 810, 922
MspR9I	CCNGG	2 cut(s)	811, 923
MunI	CAATTG	1 cut(s)	1011
Mva1269I	GAATGC	1 cut(s)	1243
NciI	CCSGG	2 cut(s)	811, 923
NdeII	GATC	8 cut(s)	256, 276, 644, 734, 794, 854, 1041, 1216
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	349
NsiI	ATGCAT	2 cut(s)	445, 531
NspI	RCATGY	2 cut(s)	529, 869
NspV	TTCGAA	1 cut(s)	902
PaeI	GCATGC	1 cut(s)	529
PagI	TCATGA	1 cut(s)	1098
PceI	AGGCCT	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PctI	GAATGC	1 cut(s)	1243
PfeI	GAWTC	4 cut(s)	806, 884, 1204, 1335
PflFI	GACNNNGTC	1 cut(s)	397
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	49, 409, 624
Ple19I	CGATCG	1 cut(s)	1044
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PshBI	ATTAAT	2 cut(s)	339, 1371
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	6 cut(s)	162, 183, 520, 753, 812, 957
PstI	CTGCAG	2 cut(s)	49, 412
PsuI	RGATCY	3 cut(s)	644, 794, 854
PsyI	GACNNNGTC	1 cut(s)	397
PvuI	CGATCG	1 cut(s)	1044
RseI	CAYNNNNRTG	5 cut(s)	317, 699, 870, 1139, 1212
SaqAI	TTAA	7 cut(s)	339, 489, 513, 600, 842, 933, 1371
SatI	GCNGC	3 cut(s)	48, 408, 623
Sau3AI	GATC	8 cut(s)	256, 276, 644, 734, 794, 854, 1041, 1216
Sau96I	GGNCC	6 cut(s)	162, 183, 520, 753, 812, 957
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	811, 923
SfaNI	GCATC	2 cut(s)	997, 1104
SfcI	CTRYAG	2 cut(s)	45, 408
SfuI	TTCGAA	1 cut(s)	902
SinI	GGWCC	3 cut(s)	183, 753, 957
SmiMI	CAYNNNNRTG	5 cut(s)	317, 699, 870, 1139, 1212
SmlI	CTYRAG	2 cut(s)	416, 488
SmoI	CTYRAG	2 cut(s)	416, 488
SphI	GCATGC	1 cut(s)	529
Sse9I	AATT	9 cut(s)	95, 232, 388, 534, 1011, 1028, 1256, 1263, 1365
SseBI	AGGCCT	1 cut(s)	414
SsiI	CCGC	3 cut(s)	523, 666, 1362
SspI	AATATT	1 cut(s)	1111
SspMI	CTAG	4 cut(s)	653, 837, 1227, 1284
StuI	AGGCCT	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	809, 921
TaaI	ACNGT	5 cut(s)	89, 330, 382, 399, 781
TaqI	TCGA	6 cut(s)	255, 291, 333, 902, 995, 1044
TasI	AATT	9 cut(s)	95, 232, 388, 534, 1011, 1028, 1256, 1263, 1365
TfiI	GAWTC	4 cut(s)	806, 884, 1204, 1335
Tru1I	TTAA	7 cut(s)	339, 489, 513, 600, 842, 933, 1371
Tru9I	TTAA	7 cut(s)	339, 489, 513, 600, 842, 933, 1371
TscAI	CASTG	2 cut(s)	358, 1141
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	47, 407, 622
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	8 cut(s)	64, 321, 329, 689, 789, 834, 1250, 1256
TspGWI	ACGGA	2 cut(s)	339, 949
TspRI	CASTG	2 cut(s)	358, 1141
Tth111I	GACNNNGTC	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	117
Vha464I	CTTAAG	1 cut(s)	488
VpaK11BI	GGWCC	3 cut(s)	183, 753, 957
VspI	ATTAAT	2 cut(s)	339, 1371
XapI	RAATTY	3 cut(s)	95, 534, 1263
XceI	RCATGY	2 cut(s)	529, 869
XcmI	CCANNNNNNNNNTGG	2 cut(s)	220, 1138
XmiI	GTMKAC	2 cut(s)	105, 1017
XspI	CTAG	4 cut(s)	653, 837, 1227, 1284
Zsp2I	ATGCAT	2 cut(s)	445, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.