Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

213502 .. 214514

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0001600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGGAGCTACTACCACTGCCTTTCTCTCTGCCTGCTGCTTGTCCTGGTGACGACTGCTTCTATTGATCGTGCCCATGGGGCAACTCCAGTCCCACATTTGAAGAGTGTTCGGCTTTGCAACCAGTGCTCCAAATGCGACTCCAGTAAATGCCCTCCAAGTGAAGCCTACCCCCACATGACAGCATTTGACAACACTCTTATTGCTGGTGCTTTACAGTCTGACTATGTGGATTTGCATGACAAAGGAGTTTATTCAGTGCCAAATATCAAAGGTGGCCAGTCAACAAAATACAATGCTTATTTTGGCTGGAAATCTACTTCTGGTTCAGCTTCTGGTTATCACAGGTTTAGCAACTACATGGACAAATGCTCGGGCGGACAAACCTACCTTACTGTGGACAAGCATGACAAGGTCAGCCTTCGATCATTGAAATCACTGGAAAGCTTCGCAGATGCTGACTGGAAGTCTTATAGTCCCCCTAAGAAACTAAATCACCACGAGTTCCGTTTTTGGGTCTCTCGCAGTACAGGAAAATGCCTCACTGTTTTTGGAGGTAAAACAAAGAAACGAACTGTGGGTGTGGCCGACTGCAAGTTTAATGGCTCAAACCGTGGCCAGCTGTTTGCCTTCCGCTTTCATTACCACCAAGCTTTCTGTTGCTGTGGTGTTCACAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

227

Amino Acids

25.25

Weight (kDa)

9.16

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	378, 634
AcoI	YGGCCR	3 cut(s)	277, 585, 616
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	2 cut(s)	397, 514
AgsI	TTSAA	2 cut(s)	103, 433
AhdI	GACNNNNNGTC	1 cut(s)	466
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	5 cut(s)	9, 332, 447, 622, 653
AluI	AGCT	5 cut(s)	9, 332, 447, 622, 653
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	523
AlwNI	CAGNNNCTG	2 cut(s)	335, 458
Ama87I	CYCGRG	1 cut(s)	373
AoxI	GGCC	3 cut(s)	277, 585, 616
ApeKI	GCWGC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	61, 488
AvaI	CYCGRG	1 cut(s)	373
BaeGI	GKGCMC	1 cut(s)	76
BalI	TGGCCA	2 cut(s)	279, 618
BauI	CACGAG	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	24
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	523
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	47
BmeRI	GACNNNNNGTC	1 cut(s)	466
BmeT110I	CYCGRG	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	1 cut(s)	445
BpmI	CTGGAG	2 cut(s)	72, 127
BsaI	GGTCTC	1 cut(s)	523
BsaJI	CCNNGG	2 cut(s)	76, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 514
Bse1I	ACTGG	6 cut(s)	89, 124, 144, 280, 444, 467
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	76, 613
BseLI	CCNNNNNNNGG	2 cut(s)	397, 514
BseNI	ACTGG	6 cut(s)	89, 124, 144, 280, 444, 467
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	24
BshFI	GGCC	3 cut(s)	279, 587, 618
BsiHKAI	GWGCWC	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	373
BslFI	GGGAC	2 cut(s)	77, 462
BslI	CCNNNNNNNGG	2 cut(s)	397, 514
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	2 cut(s)	77, 462
BsnI	GGCC	3 cut(s)	279, 587, 618
Bso31I	GGTCTC	1 cut(s)	523
BsoBI	CYCGRG	1 cut(s)	373
Bsp1286I	GDGCHC	2 cut(s)	76, 131
Bsp143I	GATC	2 cut(s)	67, 425
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	2 cut(s)	378, 634
BspANI	GGCC	3 cut(s)	279, 587, 618
BspTNI	GGTCTC	1 cut(s)	523
BsrI	ACTGG	6 cut(s)	89, 124, 144, 280, 444, 467
BssECI	CCNNGG	2 cut(s)	76, 613
BssMI	GATC	2 cut(s)	67, 425
BssSI	CACGAG	1 cut(s)	500
BssT1I	CCWWGG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	5 cut(s)	219, 397, 547, 577, 614
Bst6I	CTCTTC	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	35, 620
BstDEI	CTNAG	1 cut(s)	483
BstDSI	CCRYGG	2 cut(s)	76, 613
BstKTI	GATC	2 cut(s)	70, 428
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	2 cut(s)	67, 425
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 126, 135
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	279, 587, 618
BtgI	CCRYGG	2 cut(s)	76, 613
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	5 cut(s)	16, 131, 264, 437, 543
Cac8I	GCNNGC	2 cut(s)	35, 620
CaiI	CAGNNNCTG	2 cut(s)	335, 458
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	5 cut(s)	77, 178, 239, 361, 407
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	2 cut(s)	69, 427
DpnII	GATC	2 cut(s)	67, 425
DriI	GACNNNNNGTC	1 cut(s)	466
EaeI	YGGCCR	3 cut(s)	277, 585, 616
Eam1104I	CTCTTC	1 cut(s)	98
Eam1105I	GACNNNNNGTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	5 cut(s)	80, 181, 242, 364, 410
FaiI	YATR	7 cut(s)	78, 179, 228, 240, 362, 408, 474
FaqI	GGGAC	2 cut(s)	77, 462
FatI	CATG	5 cut(s)	76, 177, 238, 360, 406
Fnu4HI	GCNGC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	38
GsuI	CTGGAG	2 cut(s)	72, 127
HaeIII	GGCC	3 cut(s)	279, 587, 618
Hin1II	CATG	5 cut(s)	80, 181, 242, 364, 410
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HindIII	AAGCTT	2 cut(s)	445, 651
HinfI	GANTC	1 cut(s)	140
HphI	GGTGA	2 cut(s)	61, 488
Hpy166II	GTNNAC	3 cut(s)	285, 400, 673
Hpy188I	TCNGA	1 cut(s)	223
Hpy8I	GTNNAC	3 cut(s)	285, 400, 673
HpyAV	CCTTC	2 cut(s)	431, 640
HpyCH4III	ACNGT	5 cut(s)	219, 397, 547, 577, 614
HpyCH4V	TGCA	3 cut(s)	120, 238, 594
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 126, 135
HpyF3I	CTNAG	1 cut(s)	483
Hsp92II	CATG	5 cut(s)	80, 181, 242, 364, 410
Kzo9I	GATC	2 cut(s)	67, 425
LmnI	GCTCC	2 cut(s)	6, 134
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	1 cut(s)	445
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	69, 427
MboI	GATC	2 cut(s)	67, 425
MboII	GAAGA	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	76, 131
MlsI	TGGCCA	2 cut(s)	279, 618
MluNI	TGGCCA	2 cut(s)	279, 618
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	3 cut(s)	165, 548, 551
Mox20I	TGGCCA	2 cut(s)	279, 618
MscI	TGGCCA	2 cut(s)	279, 618
MseI	TTAA	1 cut(s)	600
Msp20I	TGGCCA	2 cut(s)	279, 618
MspA1I	CMGCKG	1 cut(s)	622
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	80, 126, 135
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	2 cut(s)	67, 425
NlaIII	CATG	5 cut(s)	80, 181, 242, 364, 410
NmuCI	GTSAC	1 cut(s)	49
PflFI	GACNNNGTC	1 cut(s)	413
PkrI	GCNGC	1 cut(s)	39
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PstNI	CAGNNNCTG	2 cut(s)	335, 458
PsyI	GACNNNGTC	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	2 cut(s)	67, 425
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	47
SduI	GDGCHC	2 cut(s)	76, 131
SfaNI	GCATC	1 cut(s)	445
SsiI	CCGC	2 cut(s)	378, 634
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	5 cut(s)	219, 397, 547, 577, 614
TaqI	TCGA	1 cut(s)	424
TatI	WGTACW	1 cut(s)	527
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	5 cut(s)	23, 131, 264, 444, 550
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	629
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	5 cut(s)	23, 131, 264, 444, 550
Tth111I	GACNNNGTC	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.