Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

72976248 .. 72977366

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0541300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGCCGGAGTGTTCGGTACGACGTGGAAGAAGAGATCGCGGCAAGGAGTACCGGAAGAAAGTGCTGAGAGACCTCAACTCTTTGATTTCCGGGGTCGACACCACCGCCAAGGACGACGTTGTAGATCAGGAGATCACTGATACAAAATGGTTCTTCCTTGTTTCCATGACCCAGAACTTCATCAACGGTGGCGGGTTGCCGGGTCAGGCTTTTTTCATTCCGGCGCCTTATTGTGCGAGCAGGCTAGACAAGGTCAGGTGTTCAGCCTACAGATTATGGTCTGCGTCCCGACGGCGAATGGGGTTGTCAAATTGGGCTCGACGGAGCTCGGATCTGATGAACAAGGTCCAAGTATTGTTTGGTTTTAATAACCTTAAAGTCGGTTCTTGGTCTATGGGTAGCGTCGCCGATCAGGGCAAGAACGACCCGTCATCGTTGTGGATCAACAACAACCAGGCCAGCACAATTAAAGTTGTCAAGGAATCGGTGAACATGGGTCCGGTGACTTCAGGACCCAGTACCACTAACCATCACATCTCGAAGCTGATTCAGTTCGATAACCACCCTAGTTCTAGTAGCTTCTCGAAGCTTTTTCACCAGGGAGCTCAACTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

205

Amino Acids

22.93

Weight (kDa)

10.01

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	11 - 75	1e-10	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	39
AciI	CCGC	3 cut(s)	39, 105, 192
AclWI	GGATC	2 cut(s)	339, 449
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	224
AfaI	GTAC	3 cut(s)	18, 50, 520
AjiI	CACGTC	1 cut(s)	23
AjnI	CCWGG	2 cut(s)	453, 597
AluBI	AGCT	5 cut(s)	327, 544, 579, 589, 605
AluI	AGCT	5 cut(s)	327, 544, 579, 589, 605
Alw21I	GWGCWC	2 cut(s)	329, 607
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	339, 449
AoxI	GGCC	1 cut(s)	456
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	3 cut(s)	346, 497, 512
AsuC2I	CCSGG	2 cut(s)	91, 201
AsuHPI	GGTGA	3 cut(s)	499, 514, 587
AvaII	GGWCC	3 cut(s)	346, 497, 512
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	3 cut(s)	319, 329, 607
Bbv12I	GWGCWC	2 cut(s)	329, 607
BccI	CCATC	1 cut(s)	537
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	2 cut(s)	455, 599
BcnI	CCSGG	2 cut(s)	91, 201
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	3 cut(s)	245, 567, 573
BfmI	CTRYAG	1 cut(s)	268
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
Bme1390I	CCNGG	4 cut(s)	91, 201, 455, 599
Bme18I	GGWCC	3 cut(s)	346, 497, 512
BmgBI	CACGTC	1 cut(s)	23
BmgT120I	GGNCC	3 cut(s)	346, 497, 512
BmiI	GGNNCC	3 cut(s)	225, 498, 514
BmrFI	CCNGG	4 cut(s)	91, 201, 455, 599
BmrI	ACTGGG	1 cut(s)	510
BmuI	ACTGGG	1 cut(s)	510
BpuMI	CCSGG	2 cut(s)	91, 201
BsaHI	GRCGYC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	3 cut(s)	90, 108, 598
BsaWI	WCCGGW	2 cut(s)	51, 499
Bse1I	ACTGG	1 cut(s)	516
BseBI	CCWGG	2 cut(s)	455, 599
BseDI	CCNNGG	3 cut(s)	90, 108, 598
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	223
BsiHKAI	GWGCWC	2 cut(s)	329, 607
BsiSI	CCGG	6 cut(s)	5, 52, 90, 200, 221, 500
BslFI	GGGAC	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	458
Bso31I	GGTCTC	1 cut(s)	63
Bsp1286I	GDGCHC	3 cut(s)	319, 329, 607
Bsp143I	GATC	6 cut(s)	34, 124, 132, 331, 409, 441
BspACI	CCGC	3 cut(s)	39, 105, 192
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	225, 498, 514
BspPI	GGATC	2 cut(s)	339, 449
BspT107I	GGYRCC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	516
BssECI	CCNNGG	3 cut(s)	90, 108, 598
BssMI	GATC	6 cut(s)	34, 124, 132, 331, 409, 441
BssNI	GRCGYC	1 cut(s)	224
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	455, 599
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	238, 242, 460
BstDEI	CTNAG	1 cut(s)	65
BstFNI	CGCG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	6 cut(s)	37, 127, 135, 334, 412, 444
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	6 cut(s)	34, 124, 132, 331, 409, 441
BstNI	CCWGG	2 cut(s)	455, 599
BstSCI	CCNGG	4 cut(s)	89, 199, 453, 597
BstSFI	CTRYAG	1 cut(s)	268
BstUI	CGCG	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	458
BtrI	CACGTC	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	238, 242, 460
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	3 cut(s)	346, 497, 512
CseI	GACGC	2 cut(s)	273, 391
Csp6I	GTAC	3 cut(s)	17, 49, 519
CviAII	CATG	2 cut(s)	166, 493
CviQI	GTAC	3 cut(s)	17, 49, 519
DdeI	CTNAG	1 cut(s)	65
DinI	GGCGCC	1 cut(s)	225
DpnI	GATC	6 cut(s)	36, 126, 134, 333, 411, 443
DpnII	GATC	6 cut(s)	34, 124, 132, 331, 409, 441
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Ecl136II	GAGCTC	2 cut(s)	327, 605
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	3 cut(s)	319, 329, 607
Eco31I	GGTCTC	1 cut(s)	63
Eco47I	GGWCC	3 cut(s)	346, 497, 512
Eco53kI	GAGCTC	2 cut(s)	327, 605
Eco57I	CTGAAG	1 cut(s)	492
EcoICRI	GAGCTC	2 cut(s)	327, 605
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	453, 597
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	3 cut(s)	319, 329, 607
EgeI	GGCGCC	1 cut(s)	225
EheI	GGCGCC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	169, 496
FaiI	YATR	4 cut(s)	167, 277, 395, 494
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	2 cut(s)	165, 492
FauI	CCCGC	1 cut(s)	185
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	40
FriOI	GRGCYC	3 cut(s)	319, 329, 607
Fsp4HI	GCNGC	1 cut(s)	40
FspBI	CTAG	3 cut(s)	245, 567, 573
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	6 cut(s)	5, 52, 90, 200, 221, 500
HgaI	GACGC	2 cut(s)	273, 391
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	169, 496
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	2 cut(s)	482, 547
HpaII	CCGG	6 cut(s)	5, 52, 90, 200, 221, 500
HphI	GGTGA	3 cut(s)	499, 514, 587
Hpy166II	GTNNAC	2 cut(s)	97, 490
Hpy188I	TCNGA	3 cut(s)	331, 336, 617
Hpy188III	TCNNGA	5 cut(s)	128, 288, 510, 538, 583
Hpy8I	GTNNAC	2 cut(s)	97, 490
Hpy99I	CGWCG	5 cut(s)	24, 119, 294, 324, 407
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	2 cut(s)	22, 117
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	2 cut(s)	22, 117
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	169, 496
HspAI	GCGC	1 cut(s)	224
KasI	GGCGCC	1 cut(s)	223
Kzo9I	GATC	6 cut(s)	34, 124, 132, 331, 409, 441
LmnI	GCTCC	2 cut(s)	324, 602
MaeI	CTAG	3 cut(s)	245, 567, 573
MaeII	ACGT	2 cut(s)	22, 117
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	6 cut(s)	36, 126, 134, 333, 411, 443
MboI	GATC	6 cut(s)	34, 124, 132, 331, 409, 441
MboII	GAAGA	4 cut(s)	39, 42, 67, 145
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	3 cut(s)	319, 329, 607
MluCI	AATT	2 cut(s)	310, 465
Mly113I	GGCGCC	1 cut(s)	224
MnlI	CCTC	1 cut(s)	83
MseI	TTAA	3 cut(s)	366, 375, 468
MslI	CAYNNNNRTG	1 cut(s)	436
MspI	CCGG	6 cut(s)	5, 52, 90, 200, 221, 500
MspR9I	CCNGG	4 cut(s)	91, 201, 455, 599
MvaI	CCWGG	2 cut(s)	455, 599
MvnI	CGCG	1 cut(s)	39
NarI	GGCGCC	1 cut(s)	224
NciI	CCSGG	2 cut(s)	91, 201
NdeII	GATC	6 cut(s)	34, 124, 132, 331, 409, 441
NlaIII	CATG	2 cut(s)	169, 496
NlaIV	GGNNCC	3 cut(s)	225, 498, 514
NmuCI	GTSAC	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	482, 547
PflFI	GACNNNGTC	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	41
PluTI	GGCGCC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	512
Psp124BI	GAGCTC	2 cut(s)	329, 607
Psp5II	RGGWCCY	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	453, 597
PspGI	CCWGG	2 cut(s)	453, 597
PspN4I	GGNNCC	3 cut(s)	225, 498, 514
PspPI	GGNCC	3 cut(s)	346, 497, 512
PspPPI	RGGWCCY	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	1 cut(s)	251
RsaI	GTAC	3 cut(s)	18, 50, 520
RsaNI	GTAC	3 cut(s)	17, 49, 519
RseI	CAYNNNNRTG	1 cut(s)	436
SacI	GAGCTC	2 cut(s)	329, 607
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	3 cut(s)	366, 375, 468
SatI	GCNGC	1 cut(s)	40
Sau3AI	GATC	6 cut(s)	34, 124, 132, 331, 409, 441
Sau96I	GGNCC	3 cut(s)	346, 497, 512
ScrFI	CCNGG	4 cut(s)	91, 201, 455, 599
SduI	GDGCHC	3 cut(s)	319, 329, 607
SfcI	CTRYAG	1 cut(s)	268
SfoI	GGCGCC	1 cut(s)	225
SinI	GGWCC	3 cut(s)	346, 497, 512
SmiMI	CAYNNNNRTG	1 cut(s)	436
Sse9I	AATT	2 cut(s)	310, 465
SsiI	CCGC	3 cut(s)	39, 105, 192
SspDI	GGCGCC	1 cut(s)	223
SspMI	CTAG	3 cut(s)	245, 567, 573
SstI	GAGCTC	2 cut(s)	329, 607
StyD4I	CCNGG	4 cut(s)	89, 199, 453, 597
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	2 cut(s)	25, 120
TaqI	TCGA	5 cut(s)	96, 319, 539, 555, 584
TasI	AATT	2 cut(s)	310, 465
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	2 cut(s)	482, 547
Tru1I	TTAA	3 cut(s)	366, 375, 468
Tru9I	TTAA	3 cut(s)	366, 375, 468
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	3 cut(s)	169, 205, 353
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	1 cut(s)	142
Tth111I	GACNNNGTC	1 cut(s)	251
VpaK11BI	GGWCC	3 cut(s)	346, 497, 512
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	3 cut(s)	245, 567, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.