Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

74433706 .. 74438004

Gene Structure 4299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0555900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTTTAAATATCTGCAAAGGGAACCGACAGAAGACAAGATGGGTGTTCCTGATCCAGAAGCGATCAAGCAGTTTCAGTTGTTAATGGAAGAAATTGATGAAGCGCTGAAGAAGACATTTGAGAATGTGCACCAAGGGTATGCAAATGAGACATTTGTGCGGTTTCTTAAAGCAAGGGACTGGAATGTTGGCAAAGCCCACAAAATGTTGGTTGACTGTTTGCAATGGAGGATAGACAGCGAAATTGACAATATATTGGCGAAACCAATCATCCCTACTGATTTGTACAGAGCAGTGCGAGATTCTCAGCTTTTGGGATTGTCTGGTTACTCAAAAGAGGGTCTTCCTGTCATTGCTATTGGTGTTGGGCTCAGCACATATGACAAAGCTTCTGTAAATTACTATGTTCAGTCGCACATCCAAATGAATGAATACCGAGATCGTGTAGTTTTACCTGCTGCAACAAAGAAGTATGGCAAATATATTGGAACCTGTGTGAAAGTTTTGGATATGACTGGTTTAAGGCTCTCAGCACTTAATCATATTAAGCTTTTGACTGTTATTTCCACTATCGATGACTTGAATTATCCAGAAAAGACGGATACATACTATATTGTCAATGCCCCATACATATTTTCAGCATGTTGGAAGGTGGTAAAACCTCTTTTGCAAGAAAGGACTAGGAGGAAAATCCAGGTTCTTCAAGGATGTGGGAAAGATGAATTACTGAAAATCATGGATTATTCGTCCCTCCCACATTTTTGTAGAAGACAGGGCTCTGGATCATCTCGGAATTCAGAGAATGGACATACTAGTAATTGTTTCTCGTTGGACCATGCTTTCCATCAAGAGCTCTACAATTTTGTCAAGCAGCAAGCTATTCAAACGGAGTGTGTTGCACCAATCAAACAAGGATCCTTCCACGTCAATTTCCCTGATCCAAACCCTGATGACGCAGAGATAGCGAAAACCATAGAGTCTGAGTTCCACAAGTATGGAAACGGCCTCACCAAGTCACTAAGTGGCCTAAGATTTAACGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

348

Amino Acids

39.63

Weight (kDa)

8.04

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	21 - 72	2.4e-12	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	102 - 254	1e-18	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	463
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	5 cut(s)	47, 790, 909, 922, 932
AcsI	RAATTY	1 cut(s)	793
AcuI	CTGAAG	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	1022
AfaI	GTAC	1 cut(s)	287
AfeI	AGCGCT	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	583, 704, 884
AhlI	ACTAGT	1 cut(s)	812
AjiI	CACGTC	1 cut(s)	925
AjnI	CCWGG	1 cut(s)	693
AluBI	AGCT	5 cut(s)	310, 389, 550, 853, 878
AluI	AGCT	5 cut(s)	310, 389, 550, 853, 878
Alw21I	GWGCWC	2 cut(s)	132, 855
Alw26I	GTCTC	1 cut(s)	143
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	5 cut(s)	47, 790, 909, 922, 932
Aor51HI	AGCGCT	1 cut(s)	105
AoxI	GGCC	2 cut(s)	1003, 1024
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	458, 871
ApoI	RAATTY	1 cut(s)	793
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	832
AsuHPI	GGTGA	1 cut(s)	1000
AvaII	GGWCC	1 cut(s)	832
BaeGI	GKGCMC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	914
BanII	GRGCYC	3 cut(s)	372, 779, 855
BbsI	GAAGAC	4 cut(s)	39, 119, 335, 775
Bbv12I	GWGCWC	2 cut(s)	132, 855
BbvI	GCAGC	2 cut(s)	445, 883
BccI	CCATC	2 cut(s)	34, 852
BceAI	ACGGC	1 cut(s)	1018
BciT130I	CCWGG	1 cut(s)	695
BciVI	GTATCC	1 cut(s)	595
BcoDI	GTCTC	1 cut(s)	143
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	2 cut(s)	681, 813
BfoI	RGCGCY	1 cut(s)	107
BfuAI	ACCTGC	1 cut(s)	463
BfuI	GTATCC	1 cut(s)	595
BisI	GCNGC	2 cut(s)	459, 872
BlpI	GCTNAGC	1 cut(s)	371
BlsI	GCNGC	2 cut(s)	460, 873
Bme1390I	CCNGG	1 cut(s)	695
Bme18I	GGWCC	1 cut(s)	832
BmgBI	CACGTC	1 cut(s)	925
BmgT120I	GGNCC	1 cut(s)	832
BmiI	GGNNCC	3 cut(s)	24, 490, 916
BmrFI	CCNGG	1 cut(s)	695
BpiI	GAAGAC	4 cut(s)	39, 119, 335, 775
Bpu1102I	GCTNAGC	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	185, 520
Bse3DI	GCAATG	2 cut(s)	230, 351
BseBI	CCWGG	1 cut(s)	695
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	3 cut(s)	270, 417, 713
BseMI	GCAATG	2 cut(s)	230, 351
BseMII	CTCAG	4 cut(s)	320, 385, 543, 972
BseNI	ACTGG	2 cut(s)	185, 520
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	445, 883
BshFI	GGCC	2 cut(s)	1005, 1026
BshVI	ATCGAT	1 cut(s)	573
BsiHKAI	GWGCWC	2 cut(s)	132, 855
BslFI	GGGAC	2 cut(s)	191, 733
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	191, 733
BsnI	GGCC	2 cut(s)	1005, 1026
Bsp1286I	GDGCHC	4 cut(s)	132, 372, 779, 855
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	6 cut(s)	52, 63, 439, 782, 914, 937
Bsp1720I	GCTNAGC	1 cut(s)	371
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	2 cut(s)	1005, 1026
BspCNI	CTCAG	4 cut(s)	319, 384, 542, 973
BspDI	ATCGAT	1 cut(s)	573
BspLI	GGNNCC	3 cut(s)	24, 490, 916
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	5 cut(s)	47, 790, 909, 922, 932
BsrDI	GCAATG	2 cut(s)	230, 351
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	185, 520
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	6 cut(s)	52, 63, 439, 782, 914, 937
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	3 cut(s)	218, 559, 1040
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	6 cut(s)	306, 371, 529, 981, 1019, 1028
BstF5I	GGATG	3 cut(s)	270, 417, 713
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	6 cut(s)	55, 66, 442, 785, 917, 940
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	6 cut(s)	52, 63, 439, 782, 914, 937
BstMWI	GCNNNNNNNGC	1 cut(s)	962
BstNI	CCWGG	1 cut(s)	695
BstNSI	RCATGY	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	445, 883
BstV2I	GAAGAC	4 cut(s)	39, 119, 335, 775
BstX2I	RGATCY	1 cut(s)	914
BstXI	CCANNNNNNTGG	1 cut(s)	995
BstYI	RGATCY	1 cut(s)	914
Bsu15I	ATCGAT	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	1005, 1026
BsuTUI	ATCGAT	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	925
BtsCI	GGATG	3 cut(s)	270, 417, 713
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	876
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	832
ClaI	ATCGAT	1 cut(s)	573
CseI	GACGC	1 cut(s)	962
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	3 cut(s)	642, 736, 836
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	6 cut(s)	306, 371, 529, 981, 1019, 1028
DpnI	GATC	6 cut(s)	54, 65, 441, 784, 916, 939
DpnII	GATC	6 cut(s)	52, 63, 439, 782, 914, 937
DraI	TTTAAA	1 cut(s)	7
DraIII	CACNNNGTG	1 cut(s)	1022
Ecl136II	GAGCTC	1 cut(s)	853
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	3 cut(s)	372, 779, 855
Eco47I	GGWCC	1 cut(s)	832
Eco47III	AGCGCT	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	853
Eco57I	CTGAAG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	3 cut(s)	372, 779, 855
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	3 cut(s)	645, 739, 839
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	2 cut(s)	191, 733
FatI	CATG	3 cut(s)	641, 735, 835
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	459, 872
FokI	GGATG	3 cut(s)	257, 404, 720
FriOI	GRGCYC	3 cut(s)	372, 779, 855
Fsp4HI	GCNGC	2 cut(s)	459, 872
FspBI	CTAG	2 cut(s)	681, 813
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	2 cut(s)	459, 872
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	1005, 1026
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	645, 739, 839
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	2 cut(s)	387, 548
HinfI	GANTC	2 cut(s)	302, 977
HphI	GGTGA	1 cut(s)	1000
Hpy166II	GTNNAC	2 cut(s)	130, 214
Hpy188I	TCNGA	3 cut(s)	792, 799, 982
Hpy188III	TCNNGA	6 cut(s)	50, 56, 590, 780, 848, 1044
Hpy8I	GTNNAC	2 cut(s)	130, 214
HpyAV	CCTTC	2 cut(s)	643, 928
HpyCH4III	ACNGT	3 cut(s)	218, 559, 1040
HpyCH4IV	ACGT	1 cut(s)	924
HpyCH4V	TGCA	7 cut(s)	16, 130, 143, 223, 461, 670, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	962
HpyF3I	CTNAG	6 cut(s)	306, 371, 529, 981, 1019, 1028
HpySE526I	ACGT	1 cut(s)	924
Hsp92II	CATG	3 cut(s)	645, 739, 839
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	6 cut(s)	52, 63, 439, 782, 914, 937
Lsp1109I	GCAGC	2 cut(s)	445, 883
MaeI	CTAG	2 cut(s)	681, 813
MaeII	ACGT	1 cut(s)	924
MaeIII	GTNAC	2 cut(s)	326, 1014
MalI	GATC	6 cut(s)	54, 65, 441, 784, 916, 939
MboI	GATC	6 cut(s)	52, 63, 439, 782, 914, 937
MboII	GAAGA	7 cut(s)	44, 101, 121, 124, 335, 692, 780
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	4 cut(s)	132, 372, 779, 855
MluCI	AATT	9 cut(s)	93, 243, 397, 583, 722, 793, 817, 859, 928
MlyI	GAGTC	1 cut(s)	986
MmeI	TCCRAC	2 cut(s)	626, 810
MnlI	CCTC	6 cut(s)	222, 331, 672, 678, 761, 1016
MseI	TTAA	7 cut(s)	6, 83, 168, 521, 537, 546, 1035
MslI	CAYNNNNRTG	2 cut(s)	422, 993
MspR9I	CCNGG	1 cut(s)	695
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	1 cut(s)	962
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	6 cut(s)	52, 63, 439, 782, 914, 937
NlaIII	CATG	3 cut(s)	645, 739, 839
NlaIV	GGNNCC	3 cut(s)	24, 490, 916
NmuCI	GTSAC	1 cut(s)	1014
NspI	RCATGY	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	460, 873
PleI	GAGTC	1 cut(s)	985
PpsI	GAGTC	1 cut(s)	985
Psp124BI	GAGCTC	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	3 cut(s)	24, 490, 916
PspPI	GGNCC	1 cut(s)	832
PsuI	RGATCY	1 cut(s)	914
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	2 cut(s)	422, 993
SacI	GAGCTC	1 cut(s)	855
SaqAI	TTAA	7 cut(s)	6, 83, 168, 521, 537, 546, 1035
SatI	GCNGC	2 cut(s)	459, 872
Sau3AI	GATC	6 cut(s)	52, 63, 439, 782, 914, 937
Sau96I	GGNCC	1 cut(s)	832
SchI	GAGTC	1 cut(s)	986
ScrFI	CCNGG	1 cut(s)	695
SduI	GDGCHC	4 cut(s)	132, 372, 779, 855
SinI	GGWCC	1 cut(s)	832
SmiMI	CAYNNNNRTG	2 cut(s)	422, 993
SpeI	ACTAGT	1 cut(s)	812
Sse9I	AATT	9 cut(s)	93, 243, 397, 583, 722, 793, 817, 859, 928
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	2 cut(s)	681, 813
SstI	GAGCTC	1 cut(s)	855
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	3 cut(s)	218, 559, 1040
TaiI	ACGT	1 cut(s)	927
TaqI	TCGA	1 cut(s)	573
TasI	AATT	9 cut(s)	93, 243, 397, 583, 722, 793, 817, 859, 928
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	7 cut(s)	6, 83, 168, 521, 537, 546, 1035
Tru9I	TTAA	7 cut(s)	6, 83, 168, 521, 537, 546, 1035
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	1014
TseI	GCWGC	2 cut(s)	458, 871
Tsp45I	GTSAC	1 cut(s)	1014
TspDTI	ATGAA	4 cut(s)	114, 440, 444, 735
TspGWI	ACGGA	2 cut(s)	614, 902
TspRI	CASTG	1 cut(s)	300
VneI	GTGCAC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	832
XapI	RAATTY	1 cut(s)	793
XceI	RCATGY	1 cut(s)	645
XspI	CTAG	2 cut(s)	681, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.