Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

7398390 .. 7403822

Gene Structure 5433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0094200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2769 bp

ATGGCTAGGGTTTTGGTTCAGTCCACGAATATTCCCGGTGTGGTTGCCGGGCGAAGGCTTGGCCAATCTAAAGGATCTGGAAGTGGTAGAAGGTCGACCAGGATGATGTGCACCTTACGAGCACCTGCGTTGAGACTGAGCAGTTTCTCCGGACTACGCAGTGTTAATGCTCTAGATATTATGGCGAGGCCTGGGCAAGACTTGTATTCTAAGGTGGGAGTAGCTATCTCCTCCCGGCGTCAAAAGGCTAGCAGATGTGTGCCTAAAGCCATGTTTGAGCGCTTCACAGAAAAAGCAATAAAGGTGATTATGCTTGCACAAGAGGAAGCAAGGCGACTTGGTCACAACTTTGTTGGTACAGAGCAGATACTTTTGGGTCTTATTGGTGAAGGAACTGGAATTGCTGCCAAGGTCCTTAAATCTATGGGAATCAATCTTAAAGATGCACGCGTTGAAGTGGAAAAGATCATTGGAAGGGGTAGTGGCTTTGTTGCTGTTGAAATCCCATTCACTCCTCGTGCAAAGCGAGTTTTGGAACTGTCACTCGAGGAAGCTCGACAACTGGGCCATAACTATATTGGTTCTGAACACTTGCTTTTGGGACTGCTTCGGGAAGGTGAGGGTGTGGCAGCTCGTGTTCTTGAGAATTTAGGCGCTGACCCCAGCAACATTCGCACACAGGTTATTCGTATGGTGGGTGAGAGCACAGAAGCTGTTGGTGTTGGAGCTGGACAGGGAAGCAGTGGCAACAAGATGCCAACTCTGGAGGAGTATGGTACCAATTTGACTAAGCTAGCAGAGGAGGGAAAGCTGGATCCTGTTGTTGGAAGACAACCACAAATTGAACGTGTTGTCCAAATTTTGGGCAGGCGGACGAAGAATAACCCCTGCCTGATTGGGGAACCTGGTGTTGGGAAGACTGCTATTGCTGAAGGTCTTGCTCAACGAATTGCAAGTGGTGATGTGCCTGAAACAATAGAGGGAAAGAAGGTTATCACTCTGGATATGGGTCTTCTTGTTGCTGGTACAAAATACCGTGGAGAGTTCGAGGAAAGATTAAAGAAGCTGATGGAGGAAATCAAACAAAGTGATGAGATAATTTTGTTCATTGATGAGGTGCACACTTTAATTGGAGCAGGAGCAGCAGAAGGTGCAATTGATGCTGCCAATATATTAAAACCAGCTCTTGCAAGAGGTGAACTGCAGTGTATTGGAGCCACCACTCTAGATGAATACAGAAAGCACATTGAGAAAGACCCAGCATTGGAAAGACGTTTTCAACCAGTTAAAGTTCCTGAACCATCTGTGGACGAAACAATACAGATTTTGCGAGGGCTCCGGGAGCGATATGAGATCCACCACAAACTCCGGTATACTGATGAAGCTCTAGTATCTGCCGCTCAGCTATCATACCAGTACATCAGTGATCGCTTTCTACCTGATAAAGCAATTGACTTGATTGATGAAGCTGGTTCTCGAGTTCGCCTTCGTCATGCACAGCTACCTGAAGAAGCTAGAGACCTTGACAAAGAACTGAGACAGATTACCAAGGAGAAGAATGAAGCTGTTCGAAGCCAAGACTTTGAAAAGGCTGGGGAGTTGCGTGACAGAGAAATGGACCTCAAGACACAGATCACAGCTATAACAGAGAAAGGCAAAGAGATGAGCAAGGCTGAGAGCGAGGCAGGGGATGTAGGACCTATGGTAACTGAAGTGGATATTCAACATATTGTGTCCTCTTGGACTGGTATTCCTGTTGACAAAGTGTCAGCTGATGAATCAGATCGCCTTCTCAAGATGGAAGAGACCCTCCATAAGCGGGTTATTGGTCAGGATGAAGCAGTCAAGGCTATTAGTCGTGCTATTCGTCGAGCCCGTGTTGGACTGAAAAATCCTAATCGTCCAATTGCCAGTTTCATCTTTTCTGGTCCAACTGGTGTTGGAAAATCCGAACTCGCAAAAGCTTTGGCTGCATACTACTTTGGCTCTGAAGAAGCCATGATTCGTCTTGATATGAGTGAATTCATGGAAAGGCACACTGTCTCAAAGCTTATTGGTTCTCCCCCGGGTTATGTTGGTTACACCGAGGGAGGTCAGCTTACTGAAGCTGTTAGACGTCGTCCTTACACGGTGGTGCTTTTTGATGAGATTGAGAAGGCTCATCCAGATGTCTTCAACATGATGCTTCAAATTCTTGAGGATGGAAGATTGACTGACAGCAAGGGCAGAACTGTGGATTTCAAGAATACACTTCTGATCATGACATCAAATGTTGGAAGCAGTGTAATTGAGAAAGGAGGCCGACGTATAGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTACAATCGCATCAAGAGCTTGGTGACAGAGGAGTTGAAACAGTACTTCAGACCAGAGTTCCTAAATAGGTTGGATGAAATGATTGTCTTCCGCCAGCTCACTAAGTTGGAGGTGAAGGATATAGCAGATATAATGCTGAAAGAGGTTTTCGAAAGGCTGAAGACTAAAGAGATAGAGCTTCAAGTGACAGAGAGGTTCAGAGATAGGGTGGTGGATGAAGGATACAATCCAAGTTATGGGGCGAGGCCTCTAAGAAGAGCCATAATGAGGCTTTTGGAGGACAGCATGGCTGAGAAGATGCTAGCAAGGGAGATTAAAGAGGGCGACTCGGTTATTGTTGATGTTGATTCTGATGGAAACGTAACTGTGCTCAATGGTAGCAGTGGTTCTCCCGAATCTTTGCCAGAGGCTCTTCCCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

922

Amino Acids

102.21

Weight (kDa)

6.44

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	94 - 216	1.4e-36	Clp repeat (R) N-terminal domain
Clp_N	PF02861	170 - 242	8.4e-17	Clp repeat (R) N-terminal domain
AAA	PF00004	297 - 409	6.6e-14	ATPase family associated with various cellular activities (AAA)
AAA_lid_9	PF17871	435 - 536	7e-35	AAA lid domain
UVR	PF02151	509 - 544	3.9e-09	UvrB/uvrC motif
AAA_2	PF07724	634 - 808	9.8e-69	AAA domain (Cdc48 subfamily)
AAA_5	PF07728	639 - 760	1.1e-11	AAA domain (dynein-related subfamily)
AAA	PF00004	640 - 759	3.3e-07	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	815 - 895	3.6e-24	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	133
AatII	GACGTC	1 cut(s)	2119
Acc36I	ACCTGC	1 cut(s)	133
Acc65I	GGTACC	1 cut(s)	776
AccB1I	GGYRCC	1 cut(s)	776
AccB7I	CCANNNNNTGG	2 cut(s)	862, 2582
AccBSI	CCGCTC	1 cut(s)	1400
AccI	GTMKAC	2 cut(s)	95, 1373
AccII	CGCG	1 cut(s)	450
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	4 cut(s)	871, 1398, 1819, 2437
AclWI	GGATC	4 cut(s)	82, 809, 822, 1348
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	4 cut(s)	646, 858, 2021, 2190
AcuI	CTGAAG	7 cut(s)	951, 1527, 1731, 2010, 2124, 2377, 2525
AcyI	GRCGYC	2 cut(s)	238, 2116
AfaI	GTAC	5 cut(s)	358, 778, 1027, 1418, 2390
AfeI	AGCGCT	1 cut(s)	281
AfiI	CCNNNNNNNGG	9 cut(s)	54, 824, 862, 898, 911, 1264, 1819, 2582, 2613
AflIII	ACRYGT	2 cut(s)	448, 847
AhdI	GACNNNNNGTC	1 cut(s)	1765
AjnI	CCWGG	3 cut(s)	98, 190, 904
AjuI	GAANNNNNNNTTGG	4 cut(s)	453, 485, 894, 926
AleI	CACNNNNGTG	1 cut(s)	2132
AloI	GAACNNNNNNTCC	2 cut(s)	837, 869
Alw21I	GWGCWC	5 cut(s)	113, 124, 707, 1122, 2718
Alw26I	GTCTC	5 cut(s)	127, 1512, 1531, 1799, 2047
Alw44I	GTGCAC	2 cut(s)	109, 1118
AlwI	GGATC	4 cut(s)	82, 809, 822, 1348
AlwNI	CAGNNNCTG	1 cut(s)	713
Ama87I	CYCGRG	3 cut(s)	545, 1476, 2065
Aor13HI	TCCGGA	1 cut(s)	149
Aor51HI	AGCGCT	1 cut(s)	281
AoxI	GGCC	5 cut(s)	61, 188, 565, 2299, 2591
ApaLI	GTGCAC	2 cut(s)	109, 1118
ApeKI	GCWGC	5 cut(s)	404, 629, 1142, 1163, 1970
ApoI	RAATTY	4 cut(s)	646, 858, 2021, 2190
Asp700I	GAANNNNTTC	1 cut(s)	1566
Asp718I	GGTACC	1 cut(s)	776
AspLEI	GCGC	2 cut(s)	282, 656
AspS9I	GGNCC	5 cut(s)	412, 565, 1618, 1697, 1928
AsuC2I	CCSGG	6 cut(s)	36, 49, 235, 1340, 2066, 2067
AsuHPI	GGTGA	8 cut(s)	316, 398, 629, 710, 971, 1208, 2380, 2470
AsuII	TTCGAA	2 cut(s)	1570, 2496
AsuNHI	GCTAGC	3 cut(s)	248, 793, 2647
AvaI	CYCGRG	3 cut(s)	545, 1476, 2065
AvaII	GGWCC	4 cut(s)	412, 1618, 1697, 1928
BaeGI	GKGCMC	2 cut(s)	113, 1122
BalI	TGGCCA	1 cut(s)	63
BamHI	GGATCC	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	776
BanII	GRGCYC	2 cut(s)	1338, 1876
BauI	CACGAG	2 cut(s)	516, 633
BbsI	GAAGAC	6 cut(s)	835, 923, 1004, 2164, 2425, 2513
Bbv12I	GWGCWC	5 cut(s)	113, 124, 707, 1122, 2718
BbvI	GCAGC	5 cut(s)	391, 641, 1150, 1154, 1957
BccI	CCATC	5 cut(s)	1063, 1309, 1792, 2195, 2693
BciT130I	CCWGG	3 cut(s)	100, 192, 906
BciVI	GTATCC	1 cut(s)	2561
BclI	TGATCA	1 cut(s)	2256
BcnI	CCSGG	6 cut(s)	36, 49, 235, 1340, 2066, 2067
BcoDI	GTCTC	5 cut(s)	127, 1512, 1531, 1799, 2047
BfaI	CTAG	8 cut(s)	6, 173, 249, 794, 1226, 1388, 1515, 2648
BfmI	CTRYAG	1 cut(s)	1202
BfoI	RGCGCY	2 cut(s)	283, 657
BfuAI	ACCTGC	1 cut(s)	133
BfuI	GTATCC	1 cut(s)	2561
BisI	GCNGC	6 cut(s)	405, 630, 1143, 1164, 1398, 1971
BlpI	GCTNAGC	1 cut(s)	1401
BlsI	GCNGC	6 cut(s)	406, 631, 1144, 1165, 1399, 1972
BmcAI	AGTACT	1 cut(s)	2390
Bme1390I	CCNGG	9 cut(s)	36, 49, 100, 192, 235, 906, 1340, 2066, 2067
Bme18I	GGWCC	4 cut(s)	412, 1618, 1697, 1928
BmeRI	GACNNNNNGTC	1 cut(s)	1765
BmeT110I	CYCGRG	3 cut(s)	545, 1476, 2065
BmgT120I	GGNCC	5 cut(s)	412, 565, 1618, 1697, 1928
BmiI	GGNNCC	5 cut(s)	778, 816, 903, 1216, 1337
BmrFI	CCNGG	9 cut(s)	36, 49, 100, 192, 235, 906, 1340, 2066, 2067
BmrI	ACTGGG	1 cut(s)	572
BmsI	GCATC	6 cut(s)	433, 744, 1150, 2172, 2364, 2634
BmtI	GCTAGC	3 cut(s)	252, 797, 2651
BmuI	ACTGGG	1 cut(s)	572
BpiI	GAAGAC	6 cut(s)	835, 923, 1004, 2164, 2425, 2513
BplI	GAGNNNNNCTC	2 cut(s)	2657, 2689
BpmI	CTGGAG	1 cut(s)	785
Bpu1102I	GCTNAGC	1 cut(s)	1401
Bpu14I	TTCGAA	2 cut(s)	1570, 2496
BpuEI	CTTGAG	4 cut(s)	662, 1607, 1778, 2216
BpuMI	CCSGG	6 cut(s)	36, 49, 235, 1340, 2066, 2067
BsaHI	GRCGYC	2 cut(s)	238, 2116
BsaI	GGTCTC	2 cut(s)	1512, 1799
BsaJI	CCNNGG	7 cut(s)	191, 408, 1036, 1548, 2064, 2065, 2085
BsaWI	WCCGGW	2 cut(s)	149, 1368
Bsc4I	CCNNNNNNNGG	9 cut(s)	54, 824, 862, 898, 911, 1264, 1819, 2582, 2613
Bse1I	ACTGG	7 cut(s)	400, 567, 1283, 1414, 1750, 1911, 1939
BseAI	TCCGGA	1 cut(s)	149
BseBI	CCWGG	3 cut(s)	100, 192, 906
BseDI	CCNNGG	7 cut(s)	191, 408, 1036, 1548, 2064, 2065, 2085
BseGI	GGATG	7 cut(s)	108, 1696, 1840, 2161, 2206, 2425, 2566
BseLI	CCNNNNNNNGG	9 cut(s)	54, 824, 862, 898, 911, 1264, 1819, 2582, 2613
BseMII	CTCAG	5 cut(s)	128, 1415, 1526, 1665, 2628
BseNI	ACTGG	7 cut(s)	400, 567, 1283, 1414, 1750, 1911, 1939
BseRI	GAGGAG	5 cut(s)	220, 504, 782, 815, 2390
BseSI	GKGCMC	2 cut(s)	113, 1122
BseXI	GCAGC	5 cut(s)	391, 641, 1150, 1154, 1957
BseYI	CCCAGC	3 cut(s)	662, 1258, 1592
Bsh1236I	CGCG	1 cut(s)	450
BshFI	GGCC	5 cut(s)	63, 190, 567, 2301, 2593
BshNI	GGYRCC	1 cut(s)	776
BsiHKAI	GWGCWC	5 cut(s)	113, 124, 707, 1122, 2718
BsiHKCI	CYCGRG	3 cut(s)	545, 1476, 2065
BsiSI	CCGG	7 cut(s)	36, 48, 150, 235, 1339, 1369, 2066
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	9 cut(s)	54, 824, 862, 898, 911, 1264, 1819, 2582, 2613
BsmAI	GTCTC	5 cut(s)	127, 1512, 1531, 1799, 2047
BsmFI	GGGAC	1 cut(s)	615
BsnI	GGCC	5 cut(s)	63, 190, 567, 2301, 2593
Bso31I	GGTCTC	2 cut(s)	1512, 1799
BsoBI	CYCGRG	3 cut(s)	545, 1476, 2065
Bsp119I	TTCGAA	2 cut(s)	1570, 2496
Bsp1286I	GDGCHC	7 cut(s)	113, 124, 707, 1122, 1338, 1876, 2718
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	8 cut(s)	74, 465, 814, 1353, 1426, 1632, 1783, 2256
Bsp1720I	GCTNAGC	1 cut(s)	1401
BspACI	CCGC	4 cut(s)	871, 1398, 1819, 2437
BspANI	GGCC	5 cut(s)	63, 190, 567, 2301, 2593
BspCNI	CTCAG	5 cut(s)	129, 1414, 1527, 1666, 2629
BspEI	TCCGGA	1 cut(s)	149
BspFNI	CGCG	1 cut(s)	450
BspHI	TCATGA	1 cut(s)	2259
BspLI	GGNNCC	5 cut(s)	778, 816, 903, 1216, 1337
BspMAI	CTGCAG	1 cut(s)	1206
BspMI	ACCTGC	1 cut(s)	133
BspOI	GCTAGC	3 cut(s)	252, 797, 2651
BspPI	GGATC	4 cut(s)	82, 809, 822, 1348
BspQI	GCTCTTC	2 cut(s)	2596, 2763
BspT104I	TTCGAA	2 cut(s)	1570, 2496
BspT107I	GGYRCC	1 cut(s)	776
BspTNI	GGTCTC	2 cut(s)	1512, 1799
BsrBI	CCGCTC	1 cut(s)	1400
BsrI	ACTGG	7 cut(s)	400, 567, 1283, 1414, 1750, 1911, 1939
BssECI	CCNNGG	7 cut(s)	191, 408, 1036, 1548, 2064, 2065, 2085
BssMI	GATC	8 cut(s)	74, 465, 814, 1353, 1426, 1632, 1783, 2256
BssNAI	GTATAC	1 cut(s)	1374
BssNI	GRCGYC	2 cut(s)	238, 2116
BssSI	CACGAG	2 cut(s)	516, 633
BssT1I	CCWWGG	2 cut(s)	408, 1548
Bst1107I	GTATAC	1 cut(s)	1374
Bst2BI	CACGAG	2 cut(s)	516, 633
Bst2UI	CCWGG	3 cut(s)	100, 192, 906
Bst4CI	ACNGT	7 cut(s)	540, 1037, 2041, 2131, 2233, 2388, 2713
Bst6I	CTCTTC	3 cut(s)	1797, 2596, 2763
BstACI	GRCGYC	2 cut(s)	238, 2116
BstAPI	GCANNNNNTGC	2 cut(s)	1151, 1160
BstBI	TTCGAA	2 cut(s)	1570, 2496
BstC8I	GCNNGC	7 cut(s)	250, 315, 448, 795, 869, 2441, 2649
BstDEI	CTNAG	9 cut(s)	137, 210, 789, 1401, 1535, 1674, 2448, 2597, 2637
BstDSI	CCRYGG	1 cut(s)	1036
BstF5I	GGATG	7 cut(s)	108, 1696, 1840, 2161, 2206, 2425, 2566
BstFNI	CGCG	1 cut(s)	450
BstH2I	RGCGCY	2 cut(s)	283, 657
BstHHI	GCGC	2 cut(s)	282, 656
BstKTI	GATC	8 cut(s)	77, 468, 817, 1356, 1429, 1635, 1786, 2259
BstMAI	GTCTC	5 cut(s)	127, 1512, 1531, 1799, 2047
BstMBI	GATC	8 cut(s)	74, 465, 814, 1353, 1426, 1632, 1783, 2256
BstMWI	GCNNNNNNNGC	8 cut(s)	672, 1142, 1151, 1160, 1342, 1847, 1970, 2361
BstNI	CCWGG	3 cut(s)	100, 192, 906
BstSCI	CCNGG	9 cut(s)	34, 47, 98, 190, 233, 904, 1338, 2064, 2065
BstSFI	CTRYAG	1 cut(s)	1202
BstSLI	GKGCMC	2 cut(s)	113, 1122
BstUI	CGCG	1 cut(s)	450
BstV1I	GCAGC	5 cut(s)	391, 641, 1150, 1154, 1957
BstV2I	GAAGAC	6 cut(s)	835, 923, 1004, 2164, 2425, 2513
BstX2I	RGATCY	3 cut(s)	74, 814, 1353
BstYI	RGATCY	3 cut(s)	74, 814, 1353
BstZ17I	GTATAC	1 cut(s)	1374
BsuI	GTATCC	1 cut(s)	2561
BsuRI	GGCC	5 cut(s)	63, 190, 567, 2301, 2593
BtgI	CCRYGG	1 cut(s)	1036
BtsCI	GGATG	7 cut(s)	108, 1696, 1840, 2161, 2206, 2425, 2566
BtsI	GCAGTG	5 cut(s)	166, 748, 1211, 2287, 2734
BtsIMutI	CAGTG	7 cut(s)	166, 748, 1211, 1429, 2037, 2287, 2734
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	7 cut(s)	250, 315, 448, 795, 869, 2441, 2649
CaiI	CAGNNNCTG	1 cut(s)	713
CciI	TCATGA	1 cut(s)	2259
CfoI	GCGC	2 cut(s)	282, 656
Cfr13I	GGNCC	5 cut(s)	412, 565, 1618, 1697, 1928
Cfr9I	CCCGGG	1 cut(s)	2065
CseI	GACGC	1 cut(s)	227
CsiI	ACCWGGT	1 cut(s)	904
Csp6I	GTAC	5 cut(s)	357, 777, 1026, 1417, 2389
CviAII	CATG	7 cut(s)	271, 1493, 1999, 2026, 2179, 2260, 2632
CviQI	GTAC	5 cut(s)	357, 777, 1026, 1417, 2389
DdeI	CTNAG	9 cut(s)	137, 210, 789, 1401, 1535, 1674, 2448, 2597, 2637
DpnI	GATC	8 cut(s)	76, 467, 816, 1355, 1428, 1634, 1785, 2258
DpnII	GATC	8 cut(s)	74, 465, 814, 1353, 1426, 1632, 1783, 2256
DriI	GACNNNNNGTC	1 cut(s)	1765
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	3 cut(s)	1797, 2596, 2763
Eam1105I	GACNNNNNGTC	1 cut(s)	1765
EarI	CTCTTC	3 cut(s)	1797, 2596, 2763
EciI	GGCGGA	2 cut(s)	886, 2426
Eco130I	CCWWGG	2 cut(s)	408, 1548
Eco147I	AGGCCT	2 cut(s)	190, 2593
Eco24I	GRGCYC	2 cut(s)	1338, 1876
Eco31I	GGTCTC	2 cut(s)	1512, 1799
Eco47I	GGWCC	4 cut(s)	412, 1618, 1697, 1928
Eco47III	AGCGCT	1 cut(s)	281
Eco57I	CTGAAG	7 cut(s)	951, 1527, 1731, 2010, 2124, 2377, 2525
Eco88I	CYCGRG	3 cut(s)	545, 1476, 2065
EcoO109I	RGGNCCY	2 cut(s)	412, 1697
EcoRI	GAATTC	1 cut(s)	2021
EcoRII	CCWGG	3 cut(s)	98, 190, 904
EcoT14I	CCWWGG	2 cut(s)	408, 1548
EcoT38I	GRGCYC	2 cut(s)	1338, 1876
ErhI	CCWWGG	2 cut(s)	408, 1548
FaeI	CATG	7 cut(s)	274, 1496, 2002, 2029, 2182, 2263, 2635
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	7 cut(s)	270, 1492, 1998, 2025, 2178, 2259, 2631
FauI	CCCGC	1 cut(s)	1812
FbaI	TGATCA	1 cut(s)	2256
FblI	GTMKAC	2 cut(s)	95, 1373
Fnu4HI	GCNGC	6 cut(s)	405, 630, 1143, 1164, 1398, 1971
FokI	GGATG	7 cut(s)	115, 1703, 1847, 2148, 2213, 2432, 2573
FriOI	GRGCYC	2 cut(s)	1338, 1876
Fsp4HI	GCNGC	6 cut(s)	405, 630, 1143, 1164, 1398, 1971
FspBI	CTAG	8 cut(s)	6, 173, 249, 794, 1226, 1388, 1515, 2648
GlaI	GCGC	2 cut(s)	281, 655
GluI	GCNGC	6 cut(s)	405, 630, 1143, 1164, 1398, 1971
GsaI	CCCAGC	3 cut(s)	666, 1262, 1596
GsuI	CTGGAG	1 cut(s)	785
HaeII	RGCGCY	2 cut(s)	283, 657
HaeIII	GGCC	5 cut(s)	63, 190, 567, 2301, 2593
HapII	CCGG	7 cut(s)	36, 48, 150, 235, 1339, 1369, 2066
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	2 cut(s)	282, 656
Hin1I	GRCGYC	2 cut(s)	238, 2116
Hin1II	CATG	7 cut(s)	274, 1496, 2002, 2029, 2182, 2263, 2635
Hin6I	GCGC	2 cut(s)	280, 654
HinP1I	GCGC	2 cut(s)	280, 654
HincII	GTYRAC	2 cut(s)	96, 1759
HindII	GTYRAC	2 cut(s)	96, 1759
HindIII	AAGCTT	2 cut(s)	1962, 2048
HinfI	GANTC	6 cut(s)	429, 1778, 2002, 2672, 2693, 2741
HpaII	CCGG	7 cut(s)	36, 48, 150, 235, 1339, 1369, 2066
HphI	GGTGA	8 cut(s)	316, 398, 629, 710, 971, 1208, 2380, 2470
Hpy166II	GTNNAC	8 cut(s)	24, 96, 111, 1120, 1199, 1309, 1374, 1759
Hpy188I	TCNGA	8 cut(s)	586, 1783, 1951, 1990, 2256, 2396, 2546, 2698
Hpy8I	GTNNAC	8 cut(s)	24, 96, 111, 1120, 1199, 1309, 1374, 1759
Hpy99I	CGWCG	3 cut(s)	1872, 2121, 2307
HpyCH4III	ACNGT	7 cut(s)	540, 1037, 2041, 2131, 2233, 2388, 2713
HpyCH4IV	ACGT	5 cut(s)	847, 1273, 2116, 2305, 2706
HpyF10VI	GCNNNNNNNGC	8 cut(s)	672, 1142, 1151, 1160, 1342, 1847, 1970, 2361
HpyF3I	CTNAG	9 cut(s)	137, 210, 789, 1401, 1535, 1674, 2448, 2597, 2637
HpySE526I	ACGT	5 cut(s)	847, 1273, 2116, 2305, 2706
Hsp92I	GRCGYC	2 cut(s)	238, 2116
Hsp92II	CATG	7 cut(s)	274, 1496, 2002, 2029, 2182, 2263, 2635
HspAI	GCGC	2 cut(s)	280, 654
Kpn2I	TCCGGA	1 cut(s)	149
KpnI	GGTACC	1 cut(s)	780
Ksp22I	TGATCA	1 cut(s)	2256
Kzo9I	GATC	8 cut(s)	74, 465, 814, 1353, 1426, 1632, 1783, 2256
LguI	GCTCTTC	2 cut(s)	2596, 2763
LmnI	GCTCC	6 cut(s)	725, 1133, 1139, 1214, 1341, 1342
Lsp1109I	GCAGC	5 cut(s)	391, 641, 1150, 1154, 1957
LweI	GCATC	6 cut(s)	433, 744, 1150, 2172, 2364, 2634
MabI	ACCWGGT	1 cut(s)	904
MaeI	CTAG	8 cut(s)	6, 173, 249, 794, 1226, 1388, 1515, 2648
MaeII	ACGT	5 cut(s)	847, 1273, 2116, 2305, 2706
MaeIII	GTNAC	9 cut(s)	341, 540, 1604, 1705, 2078, 2345, 2368, 2530, 2707
MalI	GATC	8 cut(s)	76, 467, 816, 1355, 1428, 1634, 1785, 2258
MbiI	CCGCTC	1 cut(s)	1400
MboI	GATC	8 cut(s)	74, 465, 814, 1353, 1426, 1632, 1783, 2256
MfeI	CAATTG	3 cut(s)	1155, 1449, 1905
MflI	RGATCY	3 cut(s)	74, 814, 1353
MhlI	GDGCHC	7 cut(s)	113, 124, 707, 1122, 1338, 1876, 2718
MlsI	TGGCCA	1 cut(s)	63
MluI	ACGCGT	1 cut(s)	448
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	2666
MmeI	TCCRAC	8 cut(s)	703, 805, 1861, 1921, 1955, 2254, 2397, 2433
Mox20I	TGGCCA	1 cut(s)	63
MroI	TCCGGA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	1566
MscI	TGGCCA	1 cut(s)	63
MseI	TTAA	9 cut(s)	165, 417, 438, 1058, 1127, 1175, 1287, 2661, 2767
MslI	CAYNNNNRTG	2 cut(s)	2132, 2166
Msp20I	TGGCCA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	1772
MspI	CCGG	7 cut(s)	36, 48, 150, 235, 1339, 1369, 2066
MspR9I	CCNGG	9 cut(s)	36, 49, 100, 192, 235, 906, 1340, 2066, 2067
MunI	CAATTG	3 cut(s)	1155, 1449, 1905
MvaI	CCWGG	3 cut(s)	100, 192, 906
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	8 cut(s)	672, 1142, 1151, 1160, 1342, 1847, 1970, 2361
NciI	CCSGG	6 cut(s)	36, 49, 235, 1340, 2066, 2067
NdeII	GATC	8 cut(s)	74, 465, 814, 1353, 1426, 1632, 1783, 2256
NheI	GCTAGC	3 cut(s)	248, 793, 2647
NlaIII	CATG	7 cut(s)	274, 1496, 2002, 2029, 2182, 2263, 2635
NlaIV	GGNNCC	5 cut(s)	778, 816, 903, 1216, 1337
NmuCI	GTSAC	5 cut(s)	341, 540, 1604, 2368, 2530
NspV	TTCGAA	2 cut(s)	1570, 2496
OliI	CACNNNNGTG	1 cut(s)	2132
PaeR7I	CTCGAG	2 cut(s)	545, 1476
PagI	TCATGA	1 cut(s)	2259
PaqCI	CACCTGC	1 cut(s)	133
PceI	AGGCCT	2 cut(s)	190, 2593
PciSI	GCTCTTC	2 cut(s)	2596, 2763
PcsI	WCGNNNNNNNCGW	3 cut(s)	523, 1864, 1873
PdmI	GAANNNNTTC	1 cut(s)	1566
PfeI	GAWTC	5 cut(s)	429, 1778, 2002, 2693, 2741
PflFI	GACNNNGTC	2 cut(s)	339, 2118
PflMI	CCANNNNNTGG	2 cut(s)	862, 2582
PfoI	TCCNGGA	1 cut(s)	1338
PkrI	GCNGC	6 cut(s)	406, 631, 1144, 1165, 1399, 1972
PleI	GAGTC	1 cut(s)	2666
PpsI	GAGTC	1 cut(s)	2666
PpuMI	RGGWCCY	2 cut(s)	412, 1697
Psp5II	RGGWCCY	2 cut(s)	412, 1697
Psp6I	CCWGG	3 cut(s)	98, 190, 904
PspFI	CCCAGC	3 cut(s)	662, 1258, 1592
PspGI	CCWGG	3 cut(s)	98, 190, 904
PspN4I	GGNNCC	5 cut(s)	778, 816, 903, 1216, 1337
PspPI	GGNCC	5 cut(s)	412, 565, 1618, 1697, 1928
PspPPI	RGGWCCY	2 cut(s)	412, 1697
PspXI	VCTCGAGB	1 cut(s)	545
PsrI	GAACNNNNNNTAC	2 cut(s)	2716, 2748
PstI	CTGCAG	1 cut(s)	1206
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	3 cut(s)	74, 814, 1353
PsyI	GACNNNGTC	2 cut(s)	339, 2118
PvuII	CAGCTG	1 cut(s)	1772
RsaI	GTAC	5 cut(s)	358, 778, 1027, 1418, 2390
RsaNI	GTAC	5 cut(s)	357, 777, 1026, 1417, 2389
RseI	CAYNNNNRTG	2 cut(s)	2132, 2166
SalI	GTCGAC	1 cut(s)	94
SapI	GCTCTTC	2 cut(s)	2596, 2763
SaqAI	TTAA	9 cut(s)	165, 417, 438, 1058, 1127, 1175, 1287, 2661, 2767
SatI	GCNGC	6 cut(s)	405, 630, 1143, 1164, 1398, 1971
Sau3AI	GATC	8 cut(s)	74, 465, 814, 1353, 1426, 1632, 1783, 2256
Sau96I	GGNCC	5 cut(s)	412, 565, 1618, 1697, 1928
ScaI	AGTACT	1 cut(s)	2390
SchI	GAGTC	1 cut(s)	2666
ScrFI	CCNGG	9 cut(s)	36, 49, 100, 192, 235, 906, 1340, 2066, 2067
SduI	GDGCHC	7 cut(s)	113, 124, 707, 1122, 1338, 1876, 2718
SexAI	ACCWGGT	1 cut(s)	904
SfaNI	GCATC	6 cut(s)	433, 744, 1150, 2172, 2364, 2634
SfcI	CTRYAG	1 cut(s)	1202
Sfr274I	CTCGAG	2 cut(s)	545, 1476
SfuI	TTCGAA	2 cut(s)	1570, 2496
SinI	GGWCC	4 cut(s)	412, 1618, 1697, 1928
SlaI	CTCGAG	2 cut(s)	545, 1476
SmaI	CCCGGG	1 cut(s)	2067
SmiMI	CAYNNNNRTG	2 cut(s)	2132, 2166
SmlI	CTYRAG	6 cut(s)	545, 641, 1476, 1622, 1793, 2195
SmoI	CTYRAG	6 cut(s)	545, 641, 1476, 1622, 1793, 2195
SseBI	AGGCCT	2 cut(s)	190, 2593
SsiI	CCGC	4 cut(s)	871, 1398, 1819, 2437
SspI	AATATT	1 cut(s)	31
SspMI	CTAG	8 cut(s)	6, 173, 249, 794, 1226, 1388, 1515, 2648
StuI	AGGCCT	2 cut(s)	190, 2593
StyD4I	CCNGG	9 cut(s)	34, 47, 98, 190, 233, 904, 1338, 2064, 2065
StyI	CCWWGG	2 cut(s)	408, 1548
TaaI	ACNGT	7 cut(s)	540, 1037, 2041, 2131, 2233, 2388, 2713
TaiI	ACGT	5 cut(s)	850, 1276, 2119, 2308, 2709
TaqI	TCGA	8 cut(s)	95, 546, 556, 1047, 1477, 1570, 1870, 2496
TatI	WGTACW	2 cut(s)	1416, 2388
TauI	GCSGC	1 cut(s)	1400
TfiI	GAWTC	5 cut(s)	429, 1778, 2002, 2693, 2741
Tru1I	TTAA	9 cut(s)	165, 417, 438, 1058, 1127, 1175, 1287, 2661, 2767
Tru9I	TTAA	9 cut(s)	165, 417, 438, 1058, 1127, 1175, 1287, 2661, 2767
TscAI	CASTG	7 cut(s)	166, 748, 1211, 1429, 2044, 2287, 2734
TseFI	GTSAC	5 cut(s)	341, 540, 1604, 2368, 2530
TseI	GCWGC	5 cut(s)	404, 629, 1142, 1163, 1970
Tsp45I	GTSAC	5 cut(s)	341, 540, 1604, 2368, 2530
TspMI	CCCGGG	1 cut(s)	2065
TspRI	CASTG	7 cut(s)	166, 748, 1211, 1429, 2044, 2287, 2734
Tth111I	GACNNNGTC	2 cut(s)	339, 2118
Van91I	CCANNNNNTGG	2 cut(s)	862, 2582
VneI	GTGCAC	2 cut(s)	109, 1118
VpaK11BI	GGWCC	4 cut(s)	412, 1618, 1697, 1928
XapI	RAATTY	4 cut(s)	646, 858, 2021, 2190
XbaI	TCTAGA	2 cut(s)	172, 1225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XhoI	CTCGAG	2 cut(s)	545, 1476
XmaI	CCCGGG	1 cut(s)	2065
XmiI	GTMKAC	2 cut(s)	95, 1373
XmnI	GAANNNNTTC	1 cut(s)	1566
XspI	CTAG	8 cut(s)	6, 173, 249, 794, 1226, 1388, 1515, 2648
ZraI	GACGTC	1 cut(s)	2117
ZrmI	AGTACT	1 cut(s)	2390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.