Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

26419530 .. 26420422

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0150600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAAAAGTTACAATGACAAAGACATGTGTGGAGATTCGGCAAGGGCAGTTTCGAAGGGTTTGGGTGTAAAGAGATTTGAGAATGGCATACCTAAGTGCGAGAAGAAGTTTGCTGACTTCCATGTATTCGAGCCGGCTCAATGCCCTAAACAAGAGGGCGGTTCTGACTATAGGGTGTATGTGATCAAACACATGCAGTGTTATGGATCTGAGTGGTGGCATCAGTTTAACTCAGAAGAGGTACGCATGGACTTAACCATTGAATTGGTAAGGAACAAATTCAATGAGTGCTGGAAATGGATCGAGGAAGCCATCAAAACTCGGCCACCACCAATATGTTCTACACCTAAGACGGTACAAAGGGAAACTAAAGCAGCACCGAAGAAAGGGACCGTGAAGAACCCAATCGTCCAACCACCTCACACTAGAGCTCAATCCAAGAGAGGTGTGGCATCAAATGTCCGTCATAGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

158

Amino Acids

18.21

Weight (kDa)

9.51

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	462
Acc36I	ACCTGC	1 cut(s)	462
AciI	CCGC	1 cut(s)	159
AclWI	GGATC	2 cut(s)	214, 308
AcoI	YGGCCR	1 cut(s)	323
AcsI	RAATTY	1 cut(s)	278
AfaI	GTAC	2 cut(s)	243, 357
AfiI	CCNNNNNNNGG	1 cut(s)	386
AflIII	ACRYGT	1 cut(s)	24
AgsI	TTSAA	2 cut(s)	263, 283
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
Alw21I	GWGCWC	1 cut(s)	433
AlwI	GGATC	2 cut(s)	214, 308
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	390
AsuII	TTCGAA	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	433
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	183
BfaI	CTAG	1 cut(s)	426
BfmI	CTRYAG	1 cut(s)	169
BfuAI	ACCTGC	1 cut(s)	462
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	391
BmsI	GCATC	2 cut(s)	229, 461
Bpu14I	TTCGAA	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse118I	RCCGGY	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMII	CTCAG	2 cut(s)	201, 246
BseXI	GCAGC	1 cut(s)	386
BshFI	GGCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	325
Bsp119I	TTCGAA	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	3 cut(s)	183, 206, 300
BspACI	CCGC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	2 cut(s)	202, 245
BspLI	GGNNCC	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	462
BspPI	GGATC	2 cut(s)	214, 308
BspT104I	TTCGAA	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssMI	GATC	3 cut(s)	183, 206, 300
Bst4CI	ACNGT	2 cut(s)	355, 394
Bst6I	CTCTTC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	4 cut(s)	93, 210, 232, 348
BstKTI	GATC	3 cut(s)	186, 209, 303
BstMBI	GATC	3 cut(s)	183, 206, 300
BstNSI	RCATGY	2 cut(s)	28, 196
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	386
BstX2I	RGATCY	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	462
Cac8I	GCNNGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	242, 356
CviAII	CATG	4 cut(s)	25, 122, 193, 247
CviJI	RGCY	5 cut(s)	133, 137, 311, 325, 431
CviKI_1	RGCY	5 cut(s)	133, 137, 311, 325, 431
CviQI	GTAC	2 cut(s)	242, 356
DdeI	CTNAG	4 cut(s)	93, 210, 232, 348
DpnI	GATC	3 cut(s)	185, 208, 302
DpnII	GATC	3 cut(s)	183, 206, 300
EaeI	YGGCCR	1 cut(s)	323
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	431
EcoICRI	GAGCTC	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	433
FaeI	CATG	4 cut(s)	28, 125, 196, 250
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	4 cut(s)	24, 121, 192, 246
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	375
FriOI	GRGCYC	1 cut(s)	433
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	426
GluI	GCNGC	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	4 cut(s)	28, 125, 196, 250
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	166, 211, 235
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	2 cut(s)	355, 394
HpyCH4V	TGCA	1 cut(s)	196
HpyF3I	CTNAG	4 cut(s)	93, 210, 232, 348
Hsp92II	CATG	4 cut(s)	28, 125, 196, 250
KroI	GCCGGC	1 cut(s)	133
KroNI	GCCGGC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	183, 206, 300
LpnPI	CCDG	3 cut(s)	147, 277, 457
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	2 cut(s)	229, 461
MaeI	CTAG	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	185, 208, 302
MboI	GATC	3 cut(s)	183, 206, 300
MboII	GAAGA	4 cut(s)	115, 248, 394, 409
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	2 cut(s)	263, 278
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	5 cut(s)	148, 232, 298, 429, 437
MroNI	GCCGGC	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	2 cut(s)	228, 254
MslI	CAYNNNNRTG	1 cut(s)	334
MspI	CCGG	1 cut(s)	134
NaeI	GCCGGC	1 cut(s)	135
NdeII	GATC	3 cut(s)	183, 206, 300
NgoMIV	GCCGGC	1 cut(s)	133
NlaIII	CATG	4 cut(s)	28, 125, 196, 250
NlaIV	GGNNCC	1 cut(s)	391
NmeAIII	GCCGAG	1 cut(s)	301
NspI	RCATGY	2 cut(s)	28, 196
NspV	TTCGAA	1 cut(s)	53
PaqCI	CACCTGC	1 cut(s)	462
PciI	ACATGT	1 cut(s)	24
PdiI	GCCGGC	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	376
PscI	ACATGT	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	206
RsaI	GTAC	2 cut(s)	243, 357
RsaNI	GTAC	2 cut(s)	242, 356
RseI	CAYNNNNRTG	1 cut(s)	334
SacI	GAGCTC	1 cut(s)	433
SaqAI	TTAA	2 cut(s)	228, 254
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	3 cut(s)	183, 206, 300
Sau96I	GGNCC	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	7 cut(s)	94, 243, 349, 421, 433, 448, 476
SfaNI	GCATC	2 cut(s)	229, 461
SfcI	CTRYAG	1 cut(s)	169
SfuI	TTCGAA	1 cut(s)	53
SinI	GGWCC	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	334
Sse9I	AATT	2 cut(s)	263, 278
SsiI	CCGC	1 cut(s)	159
SspMI	CTAG	1 cut(s)	426
SstI	GAGCTC	1 cut(s)	433
TaaI	ACNGT	2 cut(s)	355, 394
TaqI	TCGA	3 cut(s)	53, 129, 303
TasI	AATT	2 cut(s)	263, 278
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	228, 254
Tru9I	TTAA	2 cut(s)	228, 254
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	452
TspRI	CASTG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	2 cut(s)	28, 196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	278
XspI	CTAG	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.