Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

19848933 .. 19849925

Gene Structure 993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0111200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTATAGCACCATTGAGGACTTTTTGAAGAGTGACAACAACTTTGTGCCAATAAGATACTCATACTCTGACATTAAGAAGATGTCCTTCAAATTCAATGAAAAGTTGGGTGAAGGAGGCTTTGGTTCTGTATATAAAGCAAAGTTACGAAGTGGCCGTTTTGCAGCAATTAAAATGTTGGGCAAGCCTCAATCCAATGGGCAAGAATTCATCAGTGAAGTAGCTACAATTGGAAGAATTCACCATGTTAACGTGGTGCAACTTATTGGTTATTGCGTTGAAGGATCAAAACGAGCTCTAGTATATGAGTTCATGCCAAATGGGTCTCTTGATAAATATGTATTTTCAAAGGAAGGAAGAGTTCCATTAAATTTGGAGAAAATGCATGATATTTCTCTTGGAGTGGCTCGAGGGATTGAATATCTGCATCAAGGTTGTGACGTGCAGATTTTGCACTTTGATATCAAGCCTCACAACATTCTTCTTGATGAAAATTTCATACCAAAGATCTCTGACTTTGGTCTTGCAAAATTATACCCTACAGAAAATAGCATTGTTTCTTTGACAGCAGCAAGAGGAACATTAGGATATATTGCCCCTGAGTTGTTTTATAAAAGTATTGGGAAAATCTCATACAAAGCTGATGTATATAGCTTTGGAATGTTGTTGATGGAAATGGCAAGTAGAAGAAAAAATTTGAATCCATCTGTAGAGCATGATAGCCAAATATATTTTCCATCATGGGTGTATGACCAATACAGCGAGGGAAAAGATTTTGAGACAGGTGCAATGTCAGAGGAGGAAAAAACAATCATGAAAAAGATGGTTATAACTGCTTTATGGTGTATACAAATGACGCCAAGTGATCGTCCTTCAATGAAAAAAGTCATAGAAATGCTTGAAGAAGATGTTGAATGCCTACAAATGCCTCCCAAGCCATTACTTTATCCACGAGAGATGTCCATATGCGAGGTTCCAGATAACACAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

330

Amino Acids

37.6

Weight (kDa)

6.21

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	30 - 298	1.4e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 300	1e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	612, 830
AccI	GTMKAC	1 cut(s)	847
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	6 cut(s)	92, 206, 237, 370, 493, 694
AcyI	GRCGYC	1 cut(s)	857
AjiI	CACGTC	1 cut(s)	442
AjuI	GAANNNNNNNTTGG	4 cut(s)	105, 137, 717, 749
AluBI	AGCT	4 cut(s)	224, 296, 641, 654
AluI	AGCT	4 cut(s)	224, 296, 641, 654
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	2 cut(s)	330, 773
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	408
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	2 cut(s)	164, 569
ApoI	RAATTY	6 cut(s)	92, 206, 237, 370, 493, 694
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AsuHPI	GGTGA	2 cut(s)	122, 233
AvaI	CYCGRG	1 cut(s)	408
BanII	GRGCYC	1 cut(s)	298
BauI	CACGAG	1 cut(s)	951
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	176, 581
BccI	CCATC	4 cut(s)	664, 712, 745, 817
BceAI	ACGGC	1 cut(s)	141
BcoDI	GTCTC	2 cut(s)	330, 773
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	2 cut(s)	540, 708
BglII	AGATCT	1 cut(s)	507
BisI	GCNGC	2 cut(s)	165, 570
BlsI	GCNGC	2 cut(s)	166, 571
BmeT110I	CYCGRG	1 cut(s)	408
BmgBI	CACGTC	1 cut(s)	442
BmiI	GGNNCC	1 cut(s)	975
BmsI	GCATC	1 cut(s)	436
BoxI	GACNNNNGTC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	857
BsaI	GGTCTC	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	795
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	1 cut(s)	591
BseRI	GAGGAG	1 cut(s)	812
BseXI	GCAGC	2 cut(s)	176, 581
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	408
BsmAI	GTCTC	2 cut(s)	330, 773
BsmI	GAATGC	1 cut(s)	920
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	408
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	3 cut(s)	284, 507, 865
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	592
BspHI	TCATGA	1 cut(s)	813
BspLI	GGNNCC	1 cut(s)	975
BspPI	GGATC	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	795
BssMI	GATC	3 cut(s)	284, 507, 865
BssNAI	GTATAC	1 cut(s)	848
BssNI	GRCGYC	1 cut(s)	857
BssSI	CACGAG	1 cut(s)	951
Bst1107I	GTATAC	1 cut(s)	848
Bst2BI	CACGAG	1 cut(s)	951
Bst6I	CTCTTC	2 cut(s)	23, 352
BstACI	GRCGYC	1 cut(s)	857
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	600
BstKTI	GATC	3 cut(s)	287, 510, 868
BstMAI	GTCTC	2 cut(s)	330, 773
BstMBI	GATC	3 cut(s)	284, 507, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	451, 934
BstPAI	GACNNNNGTC	1 cut(s)	519
BstSFI	CTRYAG	2 cut(s)	540, 708
BstV1I	GCAGC	2 cut(s)	176, 581
BstX2I	RGATCY	1 cut(s)	507
BstYI	RGATCY	1 cut(s)	507
BstZ17I	GTATAC	1 cut(s)	848
BsuRI	GGCC	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	185
CciI	TCATGA	1 cut(s)	813
CseI	GACGC	1 cut(s)	865
CviAII	CATG	6 cut(s)	245, 313, 386, 716, 741, 814
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	3 cut(s)	286, 509, 867
DpnII	GATC	3 cut(s)	284, 507, 865
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	23, 352
EarI	CTCTTC	2 cut(s)	23, 352
Ecl136II	GAGCTC	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	330
Eco32I	GATATC	1 cut(s)	463
Eco53kI	GAGCTC	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	408
EcoICRI	GAGCTC	1 cut(s)	296
EcoRI	GAATTC	2 cut(s)	206, 237
EcoRV	GATATC	1 cut(s)	463
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	298
FaeI	CATG	6 cut(s)	248, 316, 389, 719, 744, 817
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FatI	CATG	6 cut(s)	244, 312, 385, 715, 740, 813
FauNDI	CATATG	1 cut(s)	965
FblI	GTMKAC	1 cut(s)	847
Fnu4HI	GCNGC	2 cut(s)	165, 570
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	165, 570
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	2 cut(s)	165, 570
HaeIII	GGCC	1 cut(s)	156
HgaI	GACGC	1 cut(s)	865
Hin1I	GRCGYC	1 cut(s)	857
Hin1II	CATG	6 cut(s)	248, 316, 389, 719, 744, 817
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	1 cut(s)	700
HpaI	GTTAAC	1 cut(s)	250
HphI	GGTGA	2 cut(s)	122, 233
Hpy166II	GTNNAC	2 cut(s)	250, 848
Hpy188I	TCNGA	3 cut(s)	70, 514, 796
Hpy188III	TCNNGA	4 cut(s)	329, 485, 814, 977
Hpy8I	GTNNAC	2 cut(s)	250, 848
HpyAV	CCTTC	5 cut(s)	97, 107, 275, 347, 882
HpyCH4IV	ACGT	2 cut(s)	252, 441
HpyCH4V	TGCA	8 cut(s)	164, 259, 385, 427, 445, 454, 527, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	451, 934
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	2 cut(s)	252, 441
Hsp92I	GRCGYC	1 cut(s)	857
Hsp92II	CATG	6 cut(s)	248, 316, 389, 719, 744, 817
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	284, 507, 865
LpnPI	CCDG	2 cut(s)	612, 768
Lsp1109I	GCAGC	2 cut(s)	176, 581
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	2 cut(s)	252, 441
MaeIII	GTNAC	3 cut(s)	32, 144, 437
MalI	GATC	3 cut(s)	286, 509, 867
MboI	GATC	3 cut(s)	284, 507, 865
MboII	GAAGA	8 cut(s)	40, 91, 246, 369, 473, 699, 914, 917
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	1 cut(s)	507
MhlI	GDGCHC	1 cut(s)	298
Mph1103I	ATGCAT	1 cut(s)	387
MseI	TTAA	5 cut(s)	75, 171, 249, 368, 991
MslI	CAYNNNNRTG	1 cut(s)	893
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	920
MwoI	GCNNNNNNNGC	2 cut(s)	451, 934
NdeI	CATATG	1 cut(s)	965
NdeII	GATC	3 cut(s)	284, 507, 865
NlaIII	CATG	6 cut(s)	248, 316, 389, 719, 744, 817
NlaIV	GGNNCC	1 cut(s)	975
NmuCI	GTSAC	2 cut(s)	32, 437
NsiI	ATGCAT	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	408
PagI	TCATGA	1 cut(s)	813
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PctI	GAATGC	1 cut(s)	920
PfeI	GAWTC	1 cut(s)	700
PkrI	GCNGC	2 cut(s)	166, 571
PshAI	GACNNNNGTC	1 cut(s)	519
PsiI	TTATAA	2 cut(s)	612, 830
Psp124BI	GAGCTC	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	975
PspXI	VCTCGAGB	1 cut(s)	408
PsuI	RGATCY	1 cut(s)	507
RseI	CAYNNNNRTG	1 cut(s)	893
SacI	GAGCTC	1 cut(s)	298
SaqAI	TTAA	5 cut(s)	75, 171, 249, 368, 991
SatI	GCNGC	2 cut(s)	165, 570
Sau3AI	GATC	3 cut(s)	284, 507, 865
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	9 cut(s)	226, 255, 298, 436, 444, 643, 656, 787, 975
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	2 cut(s)	540, 708
Sfr274I	CTCGAG	1 cut(s)	408
SlaI	CTCGAG	1 cut(s)	408
SmiMI	CAYNNNNRTG	1 cut(s)	893
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	298
TaiI	ACGT	2 cut(s)	255, 444
TaqI	TCGA	1 cut(s)	409
TfiI	GAWTC	1 cut(s)	700
Tru1I	TTAA	5 cut(s)	75, 171, 249, 368, 991
Tru9I	TTAA	5 cut(s)	75, 171, 249, 368, 991
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	2 cut(s)	32, 437
TseI	GCWGC	2 cut(s)	164, 569
Tsp45I	GTSAC	2 cut(s)	32, 437
TspDTI	ATGAA	7 cut(s)	114, 199, 301, 487, 504, 830, 893
TspRI	CASTG	1 cut(s)	220
XapI	RAATTY	6 cut(s)	92, 206, 237, 370, 493, 694
XhoI	CTCGAG	1 cut(s)	408
XmiI	GTMKAC	1 cut(s)	847
XspI	CTAG	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.