Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Forward (+)

16865953 .. 16866703

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0108100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTCGACGAGCTCTCTGCTAGACTCATGGTGTCCTTGGATATATCCGAGAAGGGAAAAGTCACCTTTGGTGATGTTGGTGCGGCGACGCTTTCACATAATCACTATGCGGTTGGGAGGCTTCTCTTAGCCAAACGCAAGCTCGATATTAGGGTTTTCAGGGCACATCTCCTCCGTCTAGAAATTGAAAAACAGGAGGACCCATATGTGGTTCCAATCTCCTCCTTGCTAGTCTGTGTTGAGATTCTAGGGCTTCCATCGAAGCTGATGACAGAAGAGGCTGTCTACTGGGATCCGAAGAGGCACCAGGCTAAGGTCAGGATCAAACATGATGTTGAGGCACCAATGCGTCAACCTTTTCCGGCAATGGAATTTGAGTTTGTGCCTGGGGTTTCTGCAAAACTTCGATCAAAATTTGATCAATTCGTGGGTTACAGTCGCGTTTGTGGATTGTTGGAGCACAATACTCAAGGTTATGGTGGTCTGCTGGTGCTTACGGTGGCTACGTTGGAGGTGAGAGATGTTTCTGCCCCAAACCCTAACCCTAATACTGCTAGAGTTTCCGGTCTTTTAAGACCTACTTCTAAGCTAGGTGATGGTGGCATCCTATATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

205

Amino Acids

22.75

Weight (kDa)

8.75

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	303, 340
AccI	GTMKAC	2 cut(s)	6, 285
AccII	CGCG	1 cut(s)	441
AciI	CCGC	2 cut(s)	83, 110
AclWI	GGATC	3 cut(s)	287, 300, 329
AcsI	RAATTY	2 cut(s)	371, 413
AfiI	CCNNNNNNNGG	2 cut(s)	208, 313
AgsI	TTSAA	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	306, 385
AluBI	AGCT	4 cut(s)	13, 142, 265, 589
AluI	AGCT	4 cut(s)	13, 142, 265, 589
Alw21I	GWGCWC	2 cut(s)	15, 462
AlwI	GGATC	3 cut(s)	287, 300, 329
ApoI	RAATTY	2 cut(s)	371, 413
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	4 cut(s)	55, 83, 526, 605
AvaII	GGWCC	1 cut(s)	199
BaeGI	GKGCMC	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	292
BanI	GGYRCC	2 cut(s)	303, 340
BanII	GRGCYC	1 cut(s)	15
Bbv12I	GWGCWC	2 cut(s)	15, 462
BccI	CCATC	2 cut(s)	265, 590
BcgI	CGANNNNNNTGC	1 cut(s)	33
BciT130I	CCWGG	2 cut(s)	308, 387
BclI	TGATCA	1 cut(s)	418
BfaI	CTAG	6 cut(s)	21, 179, 230, 248, 555, 590
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	308, 387
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	5 cut(s)	201, 213, 294, 305, 342
BmrFI	CCNGG	2 cut(s)	308, 387
BmrI	ACTGGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	612
BmuI	ACTGGG	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	36, 386
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	2 cut(s)	156, 186
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 313
Bse1I	ACTGG	1 cut(s)	293
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	2 cut(s)	308, 387
BseDI	CCNNGG	2 cut(s)	36, 386
BseGI	GGATG	1 cut(s)	603
BseLI	CCNNNNNNNGG	2 cut(s)	208, 313
BseMI	GCAATG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	2 cut(s)	161, 211
BseSI	GKGCMC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	441
BshNI	GGYRCC	2 cut(s)	303, 340
BsiHKAI	GWGCWC	2 cut(s)	15, 462
BsiSI	CCGG	2 cut(s)	362, 564
BslI	CCNNNNNNNGG	2 cut(s)	208, 313
Bsp1286I	GDGCHC	3 cut(s)	15, 166, 462
Bsp143I	GATC	4 cut(s)	292, 321, 407, 418
BspACI	CCGC	2 cut(s)	83, 110
BspFNI	CGCG	1 cut(s)	441
BspLI	GGNNCC	5 cut(s)	201, 213, 294, 305, 342
BspPI	GGATC	3 cut(s)	287, 300, 329
BspT107I	GGYRCC	2 cut(s)	303, 340
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	2 cut(s)	36, 386
BssMI	GATC	4 cut(s)	292, 321, 407, 418
BssT1I	CCWWGG	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	308, 387
Bst4CI	ACNGT	2 cut(s)	437, 499
Bst6I	CTCTTC	2 cut(s)	270, 293
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	127, 312, 585
BstF5I	GGATG	1 cut(s)	603
BstFNI	CGCG	1 cut(s)	441
BstKTI	GATC	4 cut(s)	295, 324, 410, 421
BstMBI	GATC	4 cut(s)	292, 321, 407, 418
BstNI	CCWGG	2 cut(s)	308, 387
BstSCI	CCNGG	2 cut(s)	306, 385
BstSLI	GKGCMC	1 cut(s)	166
BstUI	CGCG	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	603
Cac8I	GCNNGC	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	199
CseI	GACGC	2 cut(s)	97, 338
CviAII	CATG	2 cut(s)	28, 329
DdeI	CTNAG	3 cut(s)	127, 312, 585
DpnI	GATC	4 cut(s)	294, 323, 409, 420
DpnII	GATC	4 cut(s)	292, 321, 407, 418
Eam1104I	CTCTTC	2 cut(s)	270, 293
EarI	CTCTTC	2 cut(s)	270, 293
Ecl136II	GAGCTC	1 cut(s)	13
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	13
EcoICRI	GAGCTC	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRII	CCWGG	2 cut(s)	306, 385
EcoT14I	CCWWGG	1 cut(s)	36
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	31, 332
FaiI	YATR	9 cut(s)	29, 44, 99, 108, 205, 207, 330, 477, 610
FalI	AAGNNNNNCTT	2 cut(s)	565, 597
FatI	CATG	2 cut(s)	27, 328
FauNDI	CATATG	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	418
FblI	GTMKAC	2 cut(s)	6, 285
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	6 cut(s)	21, 179, 230, 248, 555, 590
GluI	GCNGC	1 cut(s)	84
HapII	CCGG	2 cut(s)	362, 564
HgaI	GACGC	2 cut(s)	97, 338
Hin1II	CATG	2 cut(s)	31, 332
HincII	GTYRAC	2 cut(s)	7, 353
HindII	GTYRAC	2 cut(s)	7, 353
HinfI	GANTC	2 cut(s)	24, 244
HpaII	CCGG	2 cut(s)	362, 564
HphI	GGTGA	4 cut(s)	55, 83, 526, 605
Hpy166II	GTNNAC	3 cut(s)	7, 286, 353
Hpy188I	TCNGA	2 cut(s)	49, 297
Hpy188III	TCNNGA	2 cut(s)	179, 319
Hpy8I	GTNNAC	3 cut(s)	7, 286, 353
Hpy99I	CGWCG	2 cut(s)	11, 91
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	437, 499
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	1 cut(s)	398
HpyF3I	CTNAG	3 cut(s)	127, 312, 585
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	2 cut(s)	31, 332
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	4 cut(s)	292, 321, 407, 418
LmnI	GCTCC	1 cut(s)	457
LweI	GCATC	1 cut(s)	612
MaeI	CTAG	6 cut(s)	21, 179, 230, 248, 555, 590
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	2 cut(s)	61, 431
MalI	GATC	4 cut(s)	294, 323, 409, 420
MboI	GATC	4 cut(s)	292, 321, 407, 418
MboII	GAAGA	2 cut(s)	287, 310
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	3 cut(s)	15, 166, 462
MluCI	AATT	4 cut(s)	183, 371, 413, 422
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	2 cut(s)	435, 489
MnlI	CCTC	8 cut(s)	111, 182, 190, 232, 271, 294, 331, 505
MseI	TTAA	1 cut(s)	572
MspI	CCGG	2 cut(s)	362, 564
MspR9I	CCNGG	2 cut(s)	308, 387
MvaI	CCWGG	2 cut(s)	308, 387
MvnI	CGCG	1 cut(s)	441
NdeI	CATATG	1 cut(s)	205
NdeII	GATC	4 cut(s)	292, 321, 407, 418
NlaIII	CATG	2 cut(s)	31, 332
NlaIV	GGNNCC	5 cut(s)	201, 213, 294, 305, 342
NmuCI	GTSAC	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	503
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
PpuMI	RGGWCCY	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	15
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	306, 385
PspGI	CCWGG	2 cut(s)	306, 385
PspN4I	GGNNCC	5 cut(s)	201, 213, 294, 305, 342
PspPI	GGNCC	1 cut(s)	199
PspPPI	RGGWCCY	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	15
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	4 cut(s)	292, 321, 407, 418
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	308, 387
SduI	GDGCHC	3 cut(s)	15, 166, 462
SfaNI	GCATC	1 cut(s)	612
SinI	GGWCC	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	4 cut(s)	183, 371, 413, 422
SsiI	CCGC	2 cut(s)	83, 110
SspMI	CTAG	6 cut(s)	21, 179, 230, 248, 555, 590
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	306, 385
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	437, 499
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	4 cut(s)	6, 144, 260, 406
TasI	AATT	4 cut(s)	183, 371, 413, 422
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	2 cut(s)	371, 413
XbaI	TCTAGA	1 cut(s)	178
XmiI	GTMKAC	2 cut(s)	6, 285
XspI	CTAG	6 cut(s)	21, 179, 230, 248, 555, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.