Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

6309590 .. 6311525

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0038500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGTACATATGTGGATTTACAATCTCGATACAGATGTGAGCAACTGATCTTACACTGGGGAGTTGTAATCATTCGAATATTGCGAGTTGTCAACAATATCCAGCCTGCCGGGCATACTGATATTGTGCATATCAATGGTCAGGAAAATGCAGAGGAGGAGGATATGGATAACAATGATGATCTTGCTGGAGATGCCATTGAAAGTGATGACAAGGAAGAACAGTATGAAATTATATTGATTGGTTTTGGCCAACCCTTTACCAAATCTAATTTTTGGATGACCAGCATCAGTGCCCCTGTGATGGTTGAGGTGGAGGGTGAGGCTGACCCACTTGAGATTGCTATGAAAGAGCTTCGTAAAAGGAAGATACCCTTTACCATCCGCCACTACCTACCTGATAGAAGCCCTGATGACAGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

141

Amino Acids

16.24

Weight (kDa)

4.57

Isoelectric Point (pI)

61.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	385
AcoI	YGGCCR	1 cut(s)	250
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
AoxI	GGCC	1 cut(s)	250
AsuC2I	CCSGG	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	332
AsuII	TTCGAA	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	298
BaeI	ACNNNNGTAYC	3 cut(s)	22, 30, 55
BalI	TGGCCA	1 cut(s)	252
BccI	CCATC	2 cut(s)	298, 389
BcnI	CCSGG	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	112
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	2 cut(s)	184, 297
BmuI	ACTGGG	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	62
BseGI	GGATG	2 cut(s)	285, 381
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	170, 173
BseSI	GKGCMC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	304
BsnI	GGCC	1 cut(s)	252
Bsp119I	TTCGAA	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	48, 181
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	252
BspT104I	TTCGAA	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	62
BssMI	GATC	2 cut(s)	48, 181
Bst4CI	ACNGT	1 cut(s)	225
BstBI	TTCGAA	1 cut(s)	76
BstC8I	GCNNGC	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	285, 381
BstKTI	GATC	2 cut(s)	51, 184
BstMBI	GATC	2 cut(s)	48, 181
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 194
BstSCI	CCNGG	1 cut(s)	110
BstSLI	GKGCMC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	2 cut(s)	285, 381
BtsIMutI	CAGTG	2 cut(s)	55, 298
Cac8I	GCNNGC	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	6
CviJI	RGCY	5 cut(s)	106, 252, 326, 355, 408
CviKI_1	RGCY	5 cut(s)	106, 252, 326, 355, 408
CviQI	GTAC	1 cut(s)	6
DpnI	GATC	2 cut(s)	50, 183
DpnII	GATC	2 cut(s)	48, 181
EaeI	YGGCCR	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	374
FaiI	YATR	8 cut(s)	10, 12, 117, 132, 167, 228, 236, 347
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FauNDI	CATATG	1 cut(s)	10
FokI	GGATG	2 cut(s)	292, 368
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	27, 143
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	130, 152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 194
Kzo9I	GATC	2 cut(s)	48, 181
LpnPI	CCDG	9 cut(s)	43, 116, 120, 124, 128, 174, 298, 312, 411
LweI	GCATC	2 cut(s)	184, 297
MalI	GATC	2 cut(s)	50, 183
MboI	GATC	2 cut(s)	48, 181
MboII	GAAGA	2 cut(s)	230, 379
MhlI	GDGCHC	1 cut(s)	298
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	2 cut(s)	231, 271
MluNI	TGGCCA	1 cut(s)	252
MnlI	CCTC	6 cut(s)	148, 151, 154, 304, 310, 316
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	252
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	112, 194
NciI	CCSGG	1 cut(s)	112
NdeI	CATATG	1 cut(s)	10
NdeII	GATC	2 cut(s)	48, 181
NspV	TTCGAA	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	82
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	48, 181
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	4 cut(s)	315, 357, 396, 400
SfaNI	GCATC	2 cut(s)	184, 297
SfuI	TTCGAA	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	231, 271
SsiI	CCGC	1 cut(s)	385
SspI	AATATT	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	110
TaaI	ACNGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	28, 76
TasI	AATT	2 cut(s)	231, 271
TscAI	CASTG	2 cut(s)	62, 298
TspDTI	ATGAA	2 cut(s)	243, 362
TspRI	CASTG	2 cut(s)	62, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.