Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

6206918 .. 6210578

Gene Structure 3661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0037500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGAAGACTAAAAAGTCAAGTAAGAAGCGTGCAGCACTGGAGCTAGATACTCCGGCTATTAAAGACAAGGTTGAAATTGGTCATGGAGAGACTGCAGATGGAGTCCTTGTTGATCAGGATTTGAACGAACCAACCATGGGAGAAAAACTTGCTAGTTTGAATATAGTACCTGATGATAGAGTGGAGAGCCAAAATAAAGAAGGCTCTTCTCTCCATGCAAAGCCTCCGAGTGCAGACTCTGTTCATATTTTGCTTAAGCAAGCACTACATGCTGATGACCGTGCCCTTCTATTCGAGTGCTTATACACCCAAGATGAGAAGGTCATTGCAAAGTCTGTCTCTCAATTGAATCCAGCTGGTGTTTTGAAGCTCTTACAATCTCTCATATCTCTTATTGAGTCAAGGGGTGCAATTTTGGCGTGTGCACTTCCATGGCTGAGAAGTCTACTTCTTCAACACGCAAGTGGGATAGTGTCTCAAGAATCTTCTTTAAGTGCCTTGAACTCTTTATATCAGCTCATTGAGTCCAGAGTTTCCACTTTTCAGTCAGCTCTTCAACTATCAAGTGTTTTAGACTTGCTGTATACAGGGGTTGTTGATGATTTGGATGATGAGAATGGCACTACAGGTCCGGTTATTTACGAGGACAAAGATAGTGATGAAGAGGAATCTGAGGACGCCATGGAGACTGATCAAGATGATGAAGATGGTGAGGATTTGGATGCAGAACTTGGTGGTGTTAGCGACTTCGAAGGAATTGAAGGACTTGATGACTTGAGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

261

Amino Acids

28.22

Weight (kDa)

4.21

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp12	PF04003	93 - 194	9e-17	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AccI	GTMKAC	2 cut(s)	445, 584
AcyI	GRCGYC	1 cut(s)	678
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	9 cut(s)	74, 124, 160, 349, 367, 455, 502, 557, 761
AleI	CACNNNNGTG	1 cut(s)	462
AluBI	AGCT	5 cut(s)	43, 356, 370, 517, 551
AluI	AGCT	5 cut(s)	43, 356, 370, 517, 551
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	4 cut(s)	83, 343, 480, 680
Alw44I	GTGCAC	1 cut(s)	423
AlwNI	CAGNNNCTG	1 cut(s)	239
ApaLI	GTGCAC	1 cut(s)	423
ApeKI	GCWGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	629
AsuHPI	GGTGA	1 cut(s)	722
AsuII	TTCGAA	1 cut(s)	750
AvaII	GGWCC	1 cut(s)	629
BaeGI	GKGCMC	2 cut(s)	286, 427
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	2 cut(s)	92, 701
BclI	TGATCA	2 cut(s)	112, 691
BcoDI	GTCTC	4 cut(s)	83, 343, 480, 680
BfaI	CTAG	2 cut(s)	44, 153
BfmI	CTRYAG	2 cut(s)	93, 624
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	629
BmgT120I	GGNCC	1 cut(s)	629
BmsI	GCATC	1 cut(s)	712
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	59
Bpu14I	TTCGAA	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	678
BsaJI	CCNNGG	3 cut(s)	135, 431, 681
BsaWI	WCCGGW	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	324
BseDI	CCNNGG	3 cut(s)	135, 431, 681
BseGI	GGATG	2 cut(s)	613, 727
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	428, 663
BseNI	ACTGG	1 cut(s)	42
BseSI	GKGCMC	2 cut(s)	286, 427
BseXI	GCAGC	1 cut(s)	44
BsgI	GTGCAG	2 cut(s)	51, 252
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	2 cut(s)	53, 632
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	4 cut(s)	83, 343, 480, 680
Bsp119I	TTCGAA	1 cut(s)	750
Bsp1286I	GDGCHC	2 cut(s)	286, 427
Bsp143I	GATC	2 cut(s)	112, 691
Bsp19I	CCATGG	3 cut(s)	135, 431, 681
BspCNI	CTCAG	2 cut(s)	429, 664
BspMAI	CTGCAG	1 cut(s)	97
BspQI	GCTCTTC	2 cut(s)	211, 558
BspT104I	TTCGAA	1 cut(s)	750
BspTI	CTTAAG	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	3 cut(s)	135, 431, 681
BssMI	GATC	2 cut(s)	112, 691
BssNAI	GTATAC	1 cut(s)	585
BssNI	GRCGYC	1 cut(s)	678
BssT1I	CCWWGG	3 cut(s)	135, 431, 681
Bst1107I	GTATAC	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	3 cut(s)	211, 558, 657
BstACI	GRCGYC	1 cut(s)	678
BstAFI	CTTAAG	1 cut(s)	254
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	750
BstC8I	GCNNGC	2 cut(s)	30, 261
BstDEI	CTNAG	2 cut(s)	437, 672
BstDSI	CCRYGG	3 cut(s)	135, 431, 681
BstF5I	GGATG	2 cut(s)	613, 727
BstKTI	GATC	2 cut(s)	115, 694
BstMAI	GTCTC	4 cut(s)	83, 343, 480, 680
BstMBI	GATC	2 cut(s)	112, 691
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 416
BstNSI	RCATGY	1 cut(s)	272
BstSFI	CTRYAG	2 cut(s)	93, 624
BstSLI	GKGCMC	2 cut(s)	286, 427
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	11
BstZ17I	GTATAC	1 cut(s)	585
BtgI	CCRYGG	3 cut(s)	135, 431, 681
BtsCI	GGATG	2 cut(s)	613, 727
BtsIMutI	CAGTG	1 cut(s)	35
Cac8I	GCNNGC	2 cut(s)	30, 261
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	629
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	6 cut(s)	83, 136, 215, 269, 432, 682
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	2 cut(s)	437, 672
DpnI	GATC	2 cut(s)	114, 693
DpnII	GATC	2 cut(s)	112, 691
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	3 cut(s)	211, 558, 657
EarI	CTCTTC	3 cut(s)	211, 558, 657
Eco130I	CCWWGG	3 cut(s)	135, 431, 681
Eco47I	GGWCC	1 cut(s)	629
EcoT14I	CCWWGG	3 cut(s)	135, 431, 681
ErhI	CCWWGG	3 cut(s)	135, 431, 681
FaeI	CATG	6 cut(s)	86, 139, 218, 272, 435, 685
FatI	CATG	6 cut(s)	82, 135, 214, 268, 431, 681
FbaI	TGATCA	2 cut(s)	112, 691
FblI	GTMKAC	2 cut(s)	445, 584
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	2 cut(s)	620, 734
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	2 cut(s)	44, 153
GluI	GCNGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	59
HapII	CCGG	2 cut(s)	53, 632
HgaI	GACGC	1 cut(s)	686
Hin1I	GRCGYC	1 cut(s)	678
Hin1II	CATG	6 cut(s)	86, 139, 218, 272, 435, 685
HinfI	GANTC	7 cut(s)	102, 236, 349, 398, 482, 524, 668
HpaII	CCGG	2 cut(s)	53, 632
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	3 cut(s)	425, 446, 585
Hpy188I	TCNGA	2 cut(s)	228, 673
Hpy188III	TCNNGA	4 cut(s)	116, 479, 528, 695
Hpy8I	GTNNAC	3 cut(s)	425, 446, 585
HpyAV	CCTTC	5 cut(s)	194, 296, 313, 746, 755
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	8 cut(s)	32, 95, 218, 233, 329, 410, 425, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 416
HpyF3I	CTNAG	2 cut(s)	437, 672
Hsp92I	GRCGYC	1 cut(s)	678
Hsp92II	CATG	6 cut(s)	86, 139, 218, 272, 435, 685
Ksp22I	TGATCA	2 cut(s)	112, 691
Kzo9I	GATC	2 cut(s)	112, 691
LguI	GCTCTTC	2 cut(s)	211, 558
LmnI	GCTCC	1 cut(s)	40
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	2 cut(s)	44, 153
MalI	GATC	2 cut(s)	114, 693
MboI	GATC	2 cut(s)	112, 691
MboII	GAAGA	7 cut(s)	16, 198, 443, 477, 545, 674, 716
MfeI	CAATTG	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	286, 427
MluCI	AATT	4 cut(s)	75, 344, 411, 756
MlyI	GAGTC	4 cut(s)	111, 230, 407, 533
MnlI	CCTC	5 cut(s)	234, 637, 658, 667, 706
MseI	TTAA	3 cut(s)	60, 255, 491
MslI	CAYNNNNRTG	3 cut(s)	273, 430, 462
MspA1I	CMGCKG	1 cut(s)	356
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	53, 632
MunI	CAATTG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	269, 416
NcoI	CCATGG	3 cut(s)	135, 431, 681
NdeII	GATC	2 cut(s)	112, 691
NlaIII	CATG	6 cut(s)	86, 139, 218, 272, 435, 685
NspI	RCATGY	1 cut(s)	272
NspV	TTCGAA	1 cut(s)	750
OliI	CACNNNNGTG	1 cut(s)	462
PciSI	GCTCTTC	2 cut(s)	211, 558
PfeI	GAWTC	3 cut(s)	349, 482, 668
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	4 cut(s)	110, 230, 406, 532
PpsI	GAGTC	4 cut(s)	110, 230, 406, 532
PspPI	GGNCC	1 cut(s)	629
PstI	CTGCAG	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	3 cut(s)	273, 430, 462
SapI	GCTCTTC	2 cut(s)	211, 558
SaqAI	TTAA	3 cut(s)	60, 255, 491
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	112, 691
Sau96I	GGNCC	1 cut(s)	629
SchI	GAGTC	4 cut(s)	111, 230, 407, 533
SduI	GDGCHC	2 cut(s)	286, 427
SetI	ASST	9 cut(s)	45, 72, 172, 324, 358, 372, 519, 553, 631
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	2 cut(s)	93, 624
SfuI	TTCGAA	1 cut(s)	750
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	3 cut(s)	273, 430, 462
SmlI	CTYRAG	3 cut(s)	254, 477, 775
SmoI	CTYRAG	3 cut(s)	254, 477, 775
Sse9I	AATT	4 cut(s)	75, 344, 411, 756
SspMI	CTAG	2 cut(s)	44, 153
StyI	CCWWGG	3 cut(s)	135, 431, 681
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	294, 750
TasI	AATT	4 cut(s)	75, 344, 411, 756
TfiI	GAWTC	3 cut(s)	349, 482, 668
Tru1I	TTAA	3 cut(s)	60, 255, 491
Tru9I	TTAA	3 cut(s)	60, 255, 491
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	4 cut(s)	17, 233, 675, 717
TspRI	CASTG	1 cut(s)	42
Vha464I	CTTAAG	1 cut(s)	254
VneI	GTGCAC	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	629
XceI	RCATGY	1 cut(s)	272
XmiI	GTMKAC	2 cut(s)	445, 584
XspI	CTAG	2 cut(s)	44, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.