Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

17945896 .. 17948071

Gene Structure 2176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0192300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCCACTGCCTAATTTCGATCATGATGGTAAGACTTTCTGCAAGCTTGGGGTTTATGGAGGGTGCCTGTGTGTATCGCGTTATCCGGTTGGTGTTTGGGACTCTATTGATTTCTGGGTCATGAGAGAATATGGCGTCAGTGGCTCATGGATTATGCTCTTTAGCTTAAAGCTCTCCTTTGATTCCAGAGAATTCTTGGTTGTGGAAAGTTATGCAGTTGCCGCGAATTGGACTGCCGAGGGGTTCGAGTTGATAAGGATTGATCATAAAGAAGACGAGAAGCTTGGGCGGTATATGCTTAAGGGGGTTTACATGTGTATGGTTGAATATGAAGAGAGTCTACTTTGGATTAGTGGTTATCATTCAGGAAAAGAGATAGAGCAGGGCAAGATACTCGAAACCCATCACAAGGCCTCAGGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

141

Amino Acids

16.18

Weight (kDa)

5.32

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	340
AccII	CGCG	2 cut(s)	79, 224
AciI	CCGC	2 cut(s)	222, 289
AcsI	RAATTY	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	228, 409
AflII	CTTAAG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	1 cut(s)	326
AluBI	AGCT	5 cut(s)	46, 165, 172, 283, 423
AluI	AGCT	5 cut(s)	46, 165, 172, 283, 423
AoxI	GGCC	1 cut(s)	411
ApoI	RAATTY	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	63
BarI	GAAGNNNNNNTAC	2 cut(s)	324, 356
BbsI	GAAGAC	1 cut(s)	279
BccI	CCATC	2 cut(s)	20, 411
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BclI	TGATCA	1 cut(s)	262
BfrI	CTTAAG	1 cut(s)	299
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 409
Bse21I	CCTNAGG	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	228, 409
Bsh1236I	CGCG	2 cut(s)	79, 224
BshFI	GGCC	1 cut(s)	413
BshNI	GGYRCC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	228, 409
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	413
Bsp143I	GATC	2 cut(s)	19, 262
BspACI	CCGC	2 cut(s)	222, 289
BspANI	GGCC	1 cut(s)	413
BspFNI	CGCG	2 cut(s)	79, 224
BspHI	TCATGA	2 cut(s)	22, 120
BspLI	GGNNCC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	63
BspTI	CTTAAG	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	2 cut(s)	19, 262
BssNI	GRCGYC	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	327
BstACI	GRCGYC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	415
BstFNI	CGCG	2 cut(s)	79, 224
BstKTI	GATC	2 cut(s)	22, 265
BstMBI	GATC	2 cut(s)	19, 262
BstMWI	GCNNNNNNNGC	3 cut(s)	141, 221, 295
BstNSI	RCATGY	1 cut(s)	316
BstUI	CGCG	2 cut(s)	79, 224
BstV2I	GAAGAC	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	413
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	5, 145
Cac8I	GCNNGC	1 cut(s)	44
CciI	TCATGA	2 cut(s)	22, 120
CseI	GACGC	1 cut(s)	124
CviAII	CATG	4 cut(s)	23, 121, 147, 313
CviJI	RGCY	7 cut(s)	46, 144, 165, 172, 283, 413, 423
CviKI_1	RGCY	7 cut(s)	46, 144, 165, 172, 283, 413, 423
DdeI	CTNAG	1 cut(s)	415
DpnI	GATC	2 cut(s)	21, 264
DpnII	GATC	2 cut(s)	19, 262
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	413
Eco81I	CCTNAGG	1 cut(s)	415
EcoRI	GAATTC	1 cut(s)	191
FaeI	CATG	4 cut(s)	26, 124, 150, 316
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	4 cut(s)	22, 120, 146, 312
FbaI	TGATCA	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	413
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	26, 124, 150, 316
HindIII	AAGCTT	2 cut(s)	44, 281
HinfI	GANTC	3 cut(s)	101, 182, 337
HpaII	CCGG	1 cut(s)	86
Hpy166II	GTNNAC	2 cut(s)	310, 341
Hpy188III	TCNNGA	5 cut(s)	23, 121, 186, 366, 417
Hpy8I	GTNNAC	2 cut(s)	310, 341
HpyCH4V	TGCA	2 cut(s)	42, 215
HpyF10VI	GCNNNNNNNGC	3 cut(s)	141, 221, 295
HpyF3I	CTNAG	1 cut(s)	415
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	26, 124, 150, 316
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	19, 262
LpnPI	CCDG	7 cut(s)	80, 99, 100, 199, 351, 368, 402
MalI	GATC	2 cut(s)	21, 264
MboI	GATC	2 cut(s)	19, 262
MboII	GAAGA	2 cut(s)	284, 344
MluCI	AATT	3 cut(s)	13, 191, 226
MlyI	GAGTC	2 cut(s)	95, 346
MnlI	CCTC	3 cut(s)	53, 232, 424
MseI	TTAA	2 cut(s)	167, 300
MslI	CAYNNNNRTG	1 cut(s)	317
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	1 cut(s)	86
MvnI	CGCG	2 cut(s)	79, 224
MwoI	GCNNNNNNNGC	3 cut(s)	141, 221, 295
NdeII	GATC	2 cut(s)	19, 262
NlaIII	CATG	4 cut(s)	26, 124, 150, 316
NlaIV	GGNNCC	1 cut(s)	65
NmeAIII	GCCGAG	1 cut(s)	262
NspI	RCATGY	1 cut(s)	316
PagI	TCATGA	2 cut(s)	22, 120
PceI	AGGCCT	1 cut(s)	413
PciI	ACATGT	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	95, 345
PpsI	GAGTC	2 cut(s)	95, 345
PscI	ACATGT	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	167, 300
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	19, 262
SchI	GAGTC	2 cut(s)	95, 346
SetI	ASST	5 cut(s)	48, 167, 174, 285, 425
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	13, 191, 226
SseBI	AGGCCT	1 cut(s)	413
SsiI	CCGC	2 cut(s)	222, 289
StuI	AGGCCT	1 cut(s)	413
TaqI	TCGA	3 cut(s)	18, 246, 396
TasI	AATT	3 cut(s)	13, 191, 226
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	167, 300
Tru9I	TTAA	2 cut(s)	167, 300
TscAI	CASTG	2 cut(s)	12, 145
TspDTI	ATGAA	1 cut(s)	345
TspRI	CASTG	2 cut(s)	12, 145
Vha464I	CTTAAG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.