Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000868

Physical Location & Seq

Genomic Coordinates Reverse (-)

20749803 .. 20753416

Gene Structure 3614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0216200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCCGTCCCATTGGTGTAAAGGAATCTGGTCATCAGATCTGAGGAAGAATGTGCATCTGGTGTTGAAGAAGTGTGAGAGCCCATCACCACGGTCACCTCCTCGGACTCGACCTTGGCCGCAATGGTCGTCGCCCATTTCCTCATCTCCGCCTGTGCAGGAAGATATCTTGCCGAACTATGATTTCCAGCCCATCCGTCCCATCACTGGAGCCTCTTCGCAATCCCCAAGTTTTGATGCTACACCTAATCTCGGAGGTGGAGGAGGATCCACTAGGGCTTGGAACTCCCAAGAGTCCAAGTCCAACACCAATACTCCCATCAGAAATTATGGTTCTGTGGATTCCTTCAAACGTTCAAAAGATGTTGTGGAGAAGGACCGAAATGTTCCTGATGCTACAATCATATCAGAGATTGACCACACCATGAAGAAGTATGCTGATAATTTACTTCAAGTTATGGAAGGTATTAGTGCACGACTAACACAACTTGAGAGCAGAACCCGCCACCTTGAGAATTATGTTGATGATTTGAAGGTATCTGTGGGAAACAATCATGGAAATGCTGATGGAAAGATGAGACAAATGGAGACTATTCTTAGAGATGTGCAAACAGGTGTTCAGGATTTGAAGGATAAGCAATCAATAGTAGAGGCTCAGAAACCAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

222

Amino Acids

24.81

Weight (kDa)

8.83

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000868)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0012800 Rorug01G0014700 Rorug01G0030600 Rorug01G0033400 Rorug01G0037400 Rorug01G0037500 Rorug01G0038500 Rorug01G0039300 Rorug01G0043500 Rorug01G0076500 Rorug01G0079900 Rorug01G0090400 Rorug01G0093000 Rorug01G0093100 Rorug01G0111200 Rorug01G0111400 Rorug01G0224300 Rorug02G0001600 Rorug02G0090400 Rorug02G0192300 Rorug02G0216200 Rorug02G0247800 Rorug02G0291300 Rorug02G0297600 Rorug02G0322500 Rorug02G0415300 Rorug02G0514600 Rorug02G0560900 Rorug03G0049700 Rorug03G0126700 Rorug03G0202000.1 Rorug03G0219400 Rorug03G0227700 Rorug03G0245600.1 Rorug03G0258200 Rorug03G0290600 Rorug03G0308500 Rorug03G0333100 Rorug03G0338000 Rorug04G0074000 Rorug04G0087900 Rorug04G0108100 Rorug04G0150600 Rorug05G0152800 Rorug05G0237200 Rorug05G0284800 Rorug05G0398700 Rorug05G0398700 Rorug05G0498600 Rorug05G0514000 Rorug05G0540000 Rorug05G0540900 Rorug05G0541000 Rorug05G0541300 Rorug05G0555900 Rorug05G0559600 Rorug06G0033800 Rorug06G0162600 Rorug06G0199900 Rorug06G0324900 Rorug07G0094200 Rorug07G0146100 Rorug07G0183400 Rorug07G0255100 Rorug07G0259300 Rorug07G0271300 Rorug07G0294900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	119, 149, 502
AclI	AACGTT	1 cut(s)	352
AclWI	GGATC	2 cut(s)	261, 274
AcoI	YGGCCR	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	206, 251
AgsI	TTSAA	6 cut(s)	67, 349, 357, 452, 532, 628
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	2 cut(s)	571, 581
Alw44I	GTGCAC	1 cut(s)	471
AlwI	GGATC	2 cut(s)	261, 274
AoxI	GGCC	1 cut(s)	116
ApaLI	GTGCAC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	2 cut(s)	78, 87
AvaII	GGWCC	1 cut(s)	376
BaeGI	GKGCMC	1 cut(s)	475
BamHI	GGATCC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	475
BccI	CCATC	5 cut(s)	91, 200, 209, 326, 560
BcoDI	GTCTC	2 cut(s)	571, 581
BfaI	CTAG	2 cut(s)	273, 667
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	2 cut(s)	211, 268
BmsI	GCATC	3 cut(s)	64, 226, 382
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	509, 530
BsaJI	CCNNGG	3 cut(s)	89, 101, 113
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 251
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	128
BseDI	CCNNGG	3 cut(s)	89, 101, 113
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	206, 251
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	2 cut(s)	32, 668
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	2 cut(s)	90, 276
BseSI	GKGCMC	1 cut(s)	475
BsgI	GTGCAG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	475
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	206, 251
BsmAI	GTCTC	2 cut(s)	571, 581
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	83, 475
Bsp143I	GATC	2 cut(s)	37, 266
BspACI	CCGC	3 cut(s)	119, 149, 502
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	2 cut(s)	33, 667
BspLI	GGNNCC	2 cut(s)	211, 268
BspPI	GGATC	2 cut(s)	261, 274
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	3 cut(s)	89, 101, 113
BssMI	GATC	2 cut(s)	37, 266
BssT1I	CCWWGG	1 cut(s)	113
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	220
BstDEI	CTNAG	3 cut(s)	41, 596, 654
BstDSI	CCRYGG	1 cut(s)	89
BstEII	GGTNACC	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	2 cut(s)	40, 269
BstMAI	GTCTC	2 cut(s)	571, 581
BstMBI	GATC	2 cut(s)	37, 266
BstMWI	GCNNNNNNNGC	1 cut(s)	501
BstPI	GGTNACC	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	475
BstX2I	RGATCY	2 cut(s)	37, 266
BstYI	RGATCY	2 cut(s)	37, 266
BsuRI	GGCC	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	376
CviAII	CATG	2 cut(s)	424, 554
CviJI	RGCY	6 cut(s)	81, 118, 190, 212, 278, 653
CviKI_1	RGCY	6 cut(s)	81, 118, 190, 212, 278, 653
DdeI	CTNAG	3 cut(s)	41, 596, 654
DpnI	GATC	2 cut(s)	39, 268
DpnII	GATC	2 cut(s)	37, 266
EaeI	YGGCCR	1 cut(s)	116
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
EciI	GGCGGA	1 cut(s)	138
Eco130I	CCWWGG	1 cut(s)	113
Eco24I	GRGCYC	1 cut(s)	83
Eco32I	GATATC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	93
EcoO65I	GGTNACC	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	2 cut(s)	427, 557
FaiI	YATR	8 cut(s)	180, 330, 404, 425, 435, 458, 519, 555
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	2 cut(s)	423, 553
FauI	CCCGC	1 cut(s)	509
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	2 cut(s)	273, 667
GluI	GCNGC	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	427, 557
HinfI	GANTC	4 cut(s)	24, 106, 293, 341
HphI	GGTGA	2 cut(s)	78, 87
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	7 cut(s)	37, 42, 105, 254, 323, 409, 657
Hpy188III	TCNNGA	2 cut(s)	389, 620
Hpy8I	GTNNAC	1 cut(s)	473
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	5 cut(s)	355, 367, 455, 526, 622
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	4 cut(s)	55, 157, 473, 607
HpyF10VI	GCNNNNNNNGC	1 cut(s)	501
HpyF3I	CTNAG	3 cut(s)	41, 596, 654
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	2 cut(s)	427, 557
Kzo9I	GATC	2 cut(s)	37, 266
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	9 cut(s)	13, 44, 143, 165, 192, 200, 402, 597, 605
LweI	GCATC	3 cut(s)	64, 226, 382
MaeI	CTAG	2 cut(s)	273, 667
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	2 cut(s)	39, 268
MboI	GATC	2 cut(s)	37, 266
MboII	GAAGA	5 cut(s)	58, 79, 173, 207, 439
MflI	RGATCY	2 cut(s)	37, 266
MhlI	GDGCHC	2 cut(s)	83, 475
MluCI	AATT	3 cut(s)	325, 442, 514
MlyI	GAGTC	2 cut(s)	100, 302
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	9 cut(s)	36, 108, 111, 151, 223, 248, 254, 257, 643
MslI	CAYNNNNRTG	1 cut(s)	558
MwoI	GCNNNNNNNGC	1 cut(s)	501
NdeII	GATC	2 cut(s)	37, 266
NlaIII	CATG	2 cut(s)	427, 557
NlaIV	GGNNCC	2 cut(s)	211, 268
NmuCI	GTSAC	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	24, 341
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	2 cut(s)	100, 301
PpsI	GAGTC	2 cut(s)	100, 301
Psp1406I	AACGTT	1 cut(s)	352
PspEI	GGTNACC	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	211, 268
PspPI	GGNCC	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	37, 266
RseI	CAYNNNNRTG	1 cut(s)	558
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	2 cut(s)	37, 266
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	2 cut(s)	100, 302
SduI	GDGCHC	2 cut(s)	83, 475
SetI	ASST	9 cut(s)	100, 115, 247, 259, 355, 466, 510, 537, 616
SfaNI	GCATC	3 cut(s)	64, 226, 382
SinI	GGWCC	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	558
SmlI	CTYRAG	2 cut(s)	488, 509
SmoI	CTYRAG	2 cut(s)	488, 509
Sse9I	AATT	3 cut(s)	325, 442, 514
SsiI	CCGC	3 cut(s)	119, 149, 502
SspMI	CTAG	2 cut(s)	273, 667
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	109
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	3 cut(s)	325, 442, 514
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	2 cut(s)	24, 341
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	440
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	376
XspI	CTAG	2 cut(s)	273, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.