Rorug01G0093000

Wall-associated receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000066
Physical Location & Seq
Forward (+)
15144180 .. 15148568
4389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0093000.1

Sequence Viewer

Length: 2034 bp
ATGAAGGTGTTGTCGTGGATGATTAGAAACGTGGCTGCTACTCGCTTGAAGTTGAAGCCCATCATGTTCAGAACAAGTACAATCAGACCTCTTTCTTCCGTCTCTATCTCAAGTAACCAGACAGCAGATGATGATGAAATGAAAAGAATCATGTTAATACTCGCGAAACGTCCTTGGATTCTTGGTTGTCAAAATGGGTATAATGTCTATCGGAACCAGTTCAATGTAATACACATTTTGAACTATTTGTTTGAGGAGAGTTTGGATGCTAATCTTGCTTTATACTTTTTCAAGTGGTCAGAATGTTGCGCCGCATCAAAGCATACAGTTTGGACTGTATGCCGAATGGTACATATTTTGGTTTCTGGGAACTTGAATCACAGAGCAGTGGACCTGCTACTGCGGCTTTTGAGAAATCATGCTGAAGAGGAGACAAGTAGTTTGTTACTAGAAGTTCTTTATGGAACCCACAGCGAAAGAAGGGTTTTAGAAACTGTGTGTAGCATGCTAGTCGATCAGTATATTAAGGAAGGCATGGTGAACGTGGCTCTGAATGTCACGTATGAAATGAAGCACCTAAACATTTTTCCTTCTGGTGGAGTTTGCAACACTCTGCTACGAGCATTATTGGAATCAAACCAGTTGGACGTTGCATGGGATTTCTTGGATGTTATGCGGACAAGAGGACTGGGTTTGAATTCTTCTATCATAAGTCTCTTCATTCATAAGTACTGTAGTGAGGGTGATCTGGGAAGTGGTTTCAAGTTGCTTGTTGAAATGAAGAAGTATGGGATTCAACCTGATGTTGTTTCATATACAATTGTTATTCATTCCCTTTGCAAGATGTCTTATTTGAAAGAAGCCACTACTTTATTGTTTAAGATGACTCAGTTGGGTATCTCTCCTGATTCGATCTTGATTAGTTCAGTTATTGATGGCCACTGCCAGTTGAGACAAACAGCGGCTGCAATTAAGATACTGAAGATCTTCCGTCCTCCCCTTAATATTTTTTTGTACAATAGCTTTACTTCAAAGCTATGTACAGATGGCAACATGTTTGAAGCTTCTGAACTTTTTCTTGAGATGTCTGAGTTTGGCTTGCTCCCAGACTGTGTCTGTTATTCAACCATTATAGGGGGCTACTGCAAAGTGAAAGACATGAATAGAGCTTTTCTGTATTTTGGGAAAATGTTGAAAAGCGGAATTACACCATCTGCTACCACATACACGTTGCTCATCGATGCTTACTGCAAGTCTGGAGATATAGAAATGGCCGAAGATATGTTTCAAGCAATGCTTTCAGAGGGTCTACTACCTGATATTGTGACTTACAACACTTTAATGGATGGCTTCGGAAGGAAGGGACACTTACAAAAGGTTTTTGGGGTCTTAGATATGATGAATTCTTCTAATGTTTCCCCTGATGTTGTTACATATAACACTCTCATTCATAGTCTTGCCACAAGAGGATTTGCCAATGAGGCAAAACAAATCATGTTTGAACTTATCAAAAGGGGTTTCTCCCTGGATGTAGCAGCATTCACTAATGTTATAGACGGGTTTTCAAAGAAGGGGAACTTTGAGGAAGTCTTTTTTGTGTGGTTCTGCATGAGTGAGCATGAGGTCAAACCCGATGTAGTGACATGCAGTGCCCTTCTCAATGGATACTGTAAGAAACATCAAATGGAACAAGCCAATGTTTTATTTCGCAAGATGCTTGATATTGGATTACATCCAGACCTGATACTGTATAACACTTTGATTCGTGGATTTTGCAGTGTTGGAAGCATTGATGATGCTTGCAACTTGATATGTATGATGGTTGAAAATGGTATCCTTCCCAATAACATTACTCACCGGGCACTTGTCCTTGGGTTCGGAAAAAAGAGGGTTAGGAATCCTGTTTTAGTGGCAGCTCTTAAATTGCAAGAAATTCTTCTCAGATATGGTATTCATGCTGATTTTGATGAATATTTAATATCAGAAAGCTGCACCCATTTTGGAGCATCTTTAGCAAATCAATCTGTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EGF_CA GUB_WAK_bind Pkinase WAK

Protein Analysis

677

Amino Acids

76.29

Weight (kDa)

6.8

Isoelectric Point (pI)

32.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 200 - 328 1.4e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 240 - 281 5.7e-12 PPR repeat family
PPR_1 PF12854 264 - 295 8.2e-08 PPR repeat
PPR_2 PF13041 267 - 316 8.1e-09 PPR repeat family
PPR_2 PF13041 335 - 383 1.2e-08 PPR repeat family
PPR_3 PF13812 358 - 417 2.4e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 366 - 397 2.7e-07 PPR repeat
PPR_2 PF13041 369 - 418 1.3e-14 PPR repeat family
PPR_long PF17177 385 - 499 8.9e-11 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 396 - 452 6.9e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 401 - 432 2.4e-07 PPR repeat
PPR PF01535 408 - 437 1e-08 PPR repeat
PPR_2 PF13041 408 - 451 9.3e-14 PPR repeat family
TPR_24 PF23276 418 - 528 3e-08 Fungal tetratrico peptide repeats
PPR_3 PF13812 429 - 484 4.8e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 436 - 467 1.3e-07 PPR repeat
PPR_2 PF13041 439 - 487 4.3e-16 PPR repeat family
PPR PF01535 442 - 471 8e-06 PPR repeat
PPR_1 PF12854 471 - 498 4.5e-06 PPR repeat
PPR_2 PF13041 474 - 523 1.1e-08 PPR repeat family
PPR_2 PF13041 510 - 558 4.6e-10 PPR repeat family
PPR_1 PF12854 541 - 572 2.8e-06 PPR repeat
PPR_2 PF13041 544 - 580 7.3e-09 PPR repeat family
PPR_1 PF12854 576 - 607 3.6e-09 PPR repeat
PPR_2 PF13041 579 - 627 8.2e-11 PPR repeat family
PPR PF01535 583 - 612 6.2e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 402
AccI GTMKAC 1 cut(s) 1309
AccII CGCG 1 cut(s) 164
AciI CCGC 5 cut(s) 312, 403, 676, 962, 1200
AcoI YGGCCR 2 cut(s) 937, 1272
AcsI RAATTY 3 cut(s) 697, 1402, 1932
AcuI CTGAAG 2 cut(s) 444, 1001
AfaI GTAC 5 cut(s) 79, 351, 731, 1016, 1042
AfiI CCNNNNNNNGG 2 cut(s) 596, 1134
AflIII ACRYGT 2 cut(s) 1053, 1227
AjnI CCWGG 1 cut(s) 1524
AluBI AGCT 6 cut(s) 1023, 1036, 1064, 1169, 1916, 1989
AluI AGCT 6 cut(s) 1023, 1036, 1064, 1169, 1916, 1989
Alw26I GTCTC 4 cut(s) 106, 425, 719, 946
AlwNI CAGNNNCTG 1 cut(s) 965
AoxI GGCC 2 cut(s) 937, 1272
ApeKI GCWGC 5 cut(s) 35, 965, 1535, 1913, 1989
ApoI RAATTY 3 cut(s) 697, 1402, 1932
ArsI GACNNNNNNTTYG 2 cut(s) 424, 456
Asp700I GAANNNNTTC 4 cut(s) 218, 986, 1074, 1935
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 391
AsuC2I CCSGG 1 cut(s) 1859
AsuHPI GGTGA 3 cut(s) 550, 755, 1847
AvaII GGWCC 1 cut(s) 391
BaeGI GKGCMC 2 cut(s) 1654, 1864
BalI TGGCCA 1 cut(s) 939
BbvI GCAGC 5 cut(s) 22, 952, 1547, 1925, 1976
BccI CCATC 6 cut(s) 68, 929, 1040, 1219, 1340, 1813
BcgI CGANNNNNNTGC 2 cut(s) 493, 527
BciT130I CCWGG 1 cut(s) 1526
BciVI GTATCC 2 cut(s) 1658, 1844
BcnI CCSGG 1 cut(s) 1859
BcoDI GTCTC 4 cut(s) 106, 425, 719, 946
BfaI CTAG 2 cut(s) 449, 509
BfmI CTRYAG 2 cut(s) 733, 2025
BfuAI ACCTGC 1 cut(s) 402
BfuI GTATCC 2 cut(s) 1658, 1844
BglI GCCNNNNNGGC 1 cut(s) 1481
BglII AGATCT 1 cut(s) 984
BisI GCNGC 8 cut(s) 36, 312, 404, 963, 966, 1536, 1914, 1990
BlsI GCNGC 8 cut(s) 37, 313, 405, 964, 967, 1537, 1915, 1991
BmcAI AGTACT 1 cut(s) 731
Bme1390I CCNGG 2 cut(s) 1526, 1859
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 2 cut(s) 215, 466
BmrFI CCNGG 2 cut(s) 1526, 1859
BmrI ACTGGG 1 cut(s) 698
BmsI GCATC 6 cut(s) 256, 323, 1231, 1704, 1786, 2015
BmuI ACTGGG 1 cut(s) 698
BpmI CTGGAG 1 cut(s) 1278
BpuEI CTTGAG 2 cut(s) 94, 1100
BpuMI CCSGG 1 cut(s) 1859
Bsa29I ATCGAT 1 cut(s) 1239
BsaAI YACGTR 1 cut(s) 561
BsaBI GATNNNNATC 1 cut(s) 270
BsaJI CCNNGG 3 cut(s) 173, 1524, 1870
Bsc4I CCNNNNNNNGG 2 cut(s) 596, 1134
Bse1I ACTGG 4 cut(s) 217, 640, 693, 946
Bse3DI GCAATG 1 cut(s) 1299
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 1 cut(s) 1526
BseCI ATCGAT 1 cut(s) 1239
BseDI CCNNGG 3 cut(s) 173, 1524, 1870
BseGI GGATG 6 cut(s) 24, 271, 673, 1351, 1534, 1732
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 2 cut(s) 596, 1134
BseMI GCAATG 1 cut(s) 1299
BseMII CTCAG 3 cut(s) 902, 1080, 1954
BseNI ACTGG 4 cut(s) 217, 640, 693, 946
BseRI GAGGAG 2 cut(s) 269, 443
BseSI GKGCMC 2 cut(s) 1654, 1864
BseXI GCAGC 5 cut(s) 22, 952, 1547, 1925, 1976
BsgI GTGCAG 1 cut(s) 1975
Bsh1236I CGCG 1 cut(s) 164
BshFI GGCC 2 cut(s) 939, 1274
BshVI ATCGAT 1 cut(s) 1239
BsiSI CCGG 1 cut(s) 1858
BslFI GGGAC 1 cut(s) 1377
BslI CCNNNNNNNGG 2 cut(s) 596, 1134
BsmAI GTCTC 4 cut(s) 106, 425, 719, 946
BsmBI CGTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 1377
BsmI GAATGC 1 cut(s) 1538
BsnI GGCC 2 cut(s) 939, 1274
Bsp1286I GDGCHC 2 cut(s) 1654, 1864
Bsp1407I TGTACA 2 cut(s) 1014, 1040
Bsp143I GATC 4 cut(s) 514, 745, 912, 984
Bsp68I TCGCGA 1 cut(s) 164
BspACI CCGC 5 cut(s) 312, 403, 676, 962, 1200
BspANI GGCC 2 cut(s) 939, 1274
BspCNI CTCAG 3 cut(s) 901, 1081, 1953
BspDI ATCGAT 1 cut(s) 1239
BspFNI CGCG 1 cut(s) 164
BspLI GGNNCC 2 cut(s) 215, 466
BspMI ACCTGC 1 cut(s) 402
BsrDI GCAATG 1 cut(s) 1299
BsrGI TGTACA 2 cut(s) 1014, 1040
BsrI ACTGG 4 cut(s) 217, 640, 693, 946
BssECI CCNNGG 3 cut(s) 173, 1524, 1870
BssMI GATC 4 cut(s) 514, 745, 912, 984
BssT1I CCWWGG 2 cut(s) 173, 1870
Bst2UI CCWGG 1 cut(s) 1526
Bst4CI ACNGT 7 cut(s) 328, 337, 496, 734, 1112, 1670, 1749
Bst6I CTCTTC 2 cut(s) 420, 722
BstAUI TGTACA 2 cut(s) 1014, 1040
BstBAI YACGTR 1 cut(s) 561
BstC8I GCNNGC 3 cut(s) 506, 1100, 1801
BstDEI CTNAG 4 cut(s) 888, 1089, 1390, 1940
BstF5I GGATG 6 cut(s) 24, 271, 673, 1351, 1534, 1732
BstFNI CGCG 1 cut(s) 164
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 4 cut(s) 517, 748, 915, 987
BstMAI GTCTC 4 cut(s) 106, 425, 719, 946
BstMBI GATC 4 cut(s) 514, 745, 912, 984
BstMWI GCNNNNNNNGC 4 cut(s) 275, 403, 1481, 2012
BstNI CCWGG 1 cut(s) 1526
BstNSI RCATGY 3 cut(s) 508, 1057, 1647
BstSCI CCNGG 2 cut(s) 1524, 1857
BstSFI CTRYAG 2 cut(s) 733, 2025
BstSLI GKGCMC 2 cut(s) 1654, 1864
BstUI CGCG 1 cut(s) 164
BstV1I GCAGC 5 cut(s) 22, 952, 1547, 1925, 1976
BstX2I RGATCY 1 cut(s) 984
BstYI RGATCY 1 cut(s) 984
Bsu15I ATCGAT 1 cut(s) 1239
BsuI GTATCC 2 cut(s) 1658, 1844
BsuRI GGCC 2 cut(s) 939, 1274
BsuTUI ATCGAT 1 cut(s) 1239
BtsCI GGATG 6 cut(s) 24, 271, 673, 1351, 1534, 1732
BtsI GCAGTG 4 cut(s) 393, 940, 1654, 1783
BtsIMutI CAGTG 4 cut(s) 393, 940, 1654, 1783
BtuMI TCGCGA 1 cut(s) 164
BveI ACCTGC 1 cut(s) 402
Cac8I GCNNGC 3 cut(s) 506, 1100, 1801
CaiI CAGNNNCTG 1 cut(s) 965
CfoI GCGC 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 391
ClaI ATCGAT 1 cut(s) 1239
Csp6I GTAC 5 cut(s) 78, 350, 730, 1015, 1041
CviQI GTAC 5 cut(s) 78, 350, 730, 1015, 1041
DdeI CTNAG 4 cut(s) 888, 1089, 1390, 1940
DpnI GATC 4 cut(s) 516, 747, 914, 986
DpnII GATC 4 cut(s) 514, 745, 912, 984
EaeI YGGCCR 2 cut(s) 937, 1272
Eam1104I CTCTTC 2 cut(s) 420, 722
EarI CTCTTC 2 cut(s) 420, 722
Eco130I CCWWGG 2 cut(s) 173, 1870
Eco47I GGWCC 1 cut(s) 391
Eco57I CTGAAG 2 cut(s) 444, 1001
EcoRI GAATTC 2 cut(s) 697, 1402
EcoRII CCWGG 1 cut(s) 1524
EcoT14I CCWWGG 2 cut(s) 173, 1870
ErhI CCWWGG 2 cut(s) 173, 1870
Esp3I CGTCTC 1 cut(s) 106
FalI AAGNNNNNCTT 8 cut(s) 1281, 1313, 1352, 1384, 1562, 1594, 1920, 1952
FaqI GGGAC 1 cut(s) 1377
FblI GTMKAC 1 cut(s) 1309
Fnu4HI GCNGC 8 cut(s) 36, 312, 404, 963, 966, 1536, 1914, 1990
FokI GGATG 6 cut(s) 31, 278, 680, 1358, 1541, 1719
Fsp4HI GCNGC 8 cut(s) 36, 312, 404, 963, 966, 1536, 1914, 1990
FspBI CTAG 2 cut(s) 449, 509
GlaI GCGC 1 cut(s) 310
GluI GCNGC 8 cut(s) 36, 312, 404, 963, 966, 1536, 1914, 1990
GsuI CTGGAG 1 cut(s) 1278
HaeIII GGCC 2 cut(s) 939, 1274
HapII CCGG 1 cut(s) 1858
HhaI GCGC 1 cut(s) 311
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HindIII AAGCTT 1 cut(s) 1062
HinfI GANTC 9 cut(s) 147, 178, 376, 632, 793, 886, 908, 1762, 1897
HpaII CCGG 1 cut(s) 1858
HphI GGTGA 3 cut(s) 550, 755, 1847
Hpy166II GTNNAC 3 cut(s) 391, 541, 1310
Hpy188III TCNNGA 6 cut(s) 163, 905, 916, 1079, 1257, 1736
Hpy8I GTNNAC 3 cut(s) 391, 541, 1310
HpyAV CCTTC 8 cut(s) 474, 524, 600, 1350, 1354, 1564, 1664, 1847
HpyCH4III ACNGT 7 cut(s) 328, 337, 496, 734, 1112, 1670, 1749
HpyCH4IV ACGT 6 cut(s) 30, 169, 543, 560, 648, 1229
HpyF10VI GCNNNNNNNGC 4 cut(s) 275, 403, 1481, 2012
HpyF3I CTNAG 4 cut(s) 888, 1089, 1390, 1940
HpySE526I ACGT 6 cut(s) 30, 169, 543, 560, 648, 1229
HspAI GCGC 1 cut(s) 309
Kzo9I GATC 4 cut(s) 514, 745, 912, 984
LmnI GCTCC 2 cut(s) 1107, 2003
Lsp1109I GCAGC 5 cut(s) 22, 952, 1547, 1925, 1976
LweI GCATC 6 cut(s) 256, 323, 1231, 1704, 1786, 2015
MaeI CTAG 2 cut(s) 449, 509
MaeII ACGT 6 cut(s) 30, 169, 543, 560, 648, 1229
MaeIII GTNAC 6 cut(s) 113, 444, 556, 1324, 1429, 1639
MalI GATC 4 cut(s) 516, 747, 914, 986
MboI GATC 4 cut(s) 514, 745, 912, 984
MfeI CAATTG 1 cut(s) 819
MflI RGATCY 1 cut(s) 984
MhlI GDGCHC 2 cut(s) 1654, 1864
MlsI TGGCCA 1 cut(s) 939
MluCI AATT 7 cut(s) 697, 819, 969, 1203, 1402, 1922, 1932
MluNI TGGCCA 1 cut(s) 939
MlyI GAGTC 1 cut(s) 880
MmeI TCCRAC 2 cut(s) 624, 1762
Mox20I TGGCCA 1 cut(s) 939
MroXI GAANNNNTTC 4 cut(s) 218, 986, 1074, 1935
MscI TGGCCA 1 cut(s) 939
MseI TTAA 8 cut(s) 155, 525, 879, 972, 1002, 1340, 1920, 1976
MslI CAYNNNNRTG 1 cut(s) 1340
Msp20I TGGCCA 1 cut(s) 939
MspA1I CMGCKG 1 cut(s) 962
MspI CCGG 1 cut(s) 1858
MspR9I CCNGG 2 cut(s) 1526, 1859
MunI CAATTG 1 cut(s) 819
Mva1269I GAATGC 1 cut(s) 1538
MvaI CCWGG 1 cut(s) 1526
MvnI CGCG 1 cut(s) 164
MwoI GCNNNNNNNGC 4 cut(s) 275, 403, 1481, 2012
NciI CCSGG 1 cut(s) 1859
NdeII GATC 4 cut(s) 514, 745, 912, 984
NlaIV GGNNCC 2 cut(s) 215, 466
NmuCI GTSAC 3 cut(s) 556, 1324, 1639
NruI TCGCGA 1 cut(s) 164
NspI RCATGY 3 cut(s) 508, 1057, 1647
PaeI GCATGC 1 cut(s) 508
PciI ACATGT 1 cut(s) 1053
PctI GAATGC 1 cut(s) 1538
PdmI GAANNNNTTC 4 cut(s) 218, 986, 1074, 1935
PfeI GAWTC 8 cut(s) 147, 178, 376, 632, 793, 908, 1762, 1897
PflFI GACNNNGTC 1 cut(s) 1112
PkrI GCNGC 8 cut(s) 37, 313, 405, 964, 967, 1537, 1915, 1991
PleI GAGTC 1 cut(s) 880
PpsI GAGTC 1 cut(s) 880
Ppu21I YACGTR 1 cut(s) 561
PscI ACATGT 1 cut(s) 1053
Psp6I CCWGG 1 cut(s) 1524
PspGI CCWGG 1 cut(s) 1524
PspN4I GGNNCC 2 cut(s) 215, 466
PspPI GGNCC 1 cut(s) 391
PstNI CAGNNNCTG 1 cut(s) 965
PsuI RGATCY 1 cut(s) 984
PsyI GACNNNGTC 1 cut(s) 1112
RruI TCGCGA 1 cut(s) 164
RsaI GTAC 5 cut(s) 79, 351, 731, 1016, 1042
RsaNI GTAC 5 cut(s) 78, 350, 730, 1015, 1041
RseI CAYNNNNRTG 1 cut(s) 1340
SaqAI TTAA 8 cut(s) 155, 525, 879, 972, 1002, 1340, 1920, 1976
SatI GCNGC 8 cut(s) 36, 312, 404, 963, 966, 1536, 1914, 1990
Sau3AI GATC 4 cut(s) 514, 745, 912, 984
Sau96I GGNCC 1 cut(s) 391
ScaI AGTACT 1 cut(s) 731
SchI GAGTC 1 cut(s) 880
ScrFI CCNGG 2 cut(s) 1526, 1859
SduI GDGCHC 2 cut(s) 1654, 1864
SfaNI GCATC 6 cut(s) 256, 323, 1231, 1704, 1786, 2015
SfcI CTRYAG 2 cut(s) 733, 2025
SinI GGWCC 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 1340
SmlI CTYRAG 2 cut(s) 109, 1079
SmoI CTYRAG 2 cut(s) 109, 1079
SphI GCATGC 1 cut(s) 508
Sse9I AATT 7 cut(s) 697, 819, 969, 1203, 1402, 1922, 1932
SsiI CCGC 5 cut(s) 312, 403, 676, 962, 1200
SspI AATATT 2 cut(s) 1006, 1973
SspMI CTAG 2 cut(s) 449, 509
StyD4I CCNGG 2 cut(s) 1524, 1857
StyI CCWWGG 2 cut(s) 173, 1870
TaaI ACNGT 7 cut(s) 328, 337, 496, 734, 1112, 1670, 1749
TaiI ACGT 6 cut(s) 33, 172, 546, 563, 651, 1232
TaqI TCGA 3 cut(s) 513, 911, 1239
TasI AATT 7 cut(s) 697, 819, 969, 1203, 1402, 1922, 1932
TatI WGTACW 4 cut(s) 77, 729, 1014, 1040
TauI GCSGC 3 cut(s) 314, 406, 965
TfiI GAWTC 8 cut(s) 147, 178, 376, 632, 793, 908, 1762, 1897
Tru1I TTAA 8 cut(s) 155, 525, 879, 972, 1002, 1340, 1920, 1976
Tru9I TTAA 8 cut(s) 155, 525, 879, 972, 1002, 1340, 1920, 1976
TscAI CASTG 4 cut(s) 393, 947, 1654, 1783
TseFI GTSAC 3 cut(s) 556, 1324, 1639
TseI GCWGC 5 cut(s) 35, 965, 1535, 1913, 1989
Tsp45I GTSAC 3 cut(s) 556, 1324, 1639
TspGWI ACGGA 2 cut(s) 88, 980
TspRI CASTG 4 cut(s) 393, 947, 1654, 1783
Tth111I GACNNNGTC 1 cut(s) 1112
VpaK11BI GGWCC 1 cut(s) 391
XapI RAATTY 3 cut(s) 697, 1402, 1932
XceI RCATGY 3 cut(s) 508, 1057, 1647
XmiI GTMKAC 1 cut(s) 1309
XmnI GAANNNNTTC 4 cut(s) 218, 986, 1074, 1935
XspI CTAG 2 cut(s) 449, 509
ZrmI AGTACT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.