DNA RNA polymerases superfamily protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pkinase | PF00069 | 52 - 112 | 9.1e-09 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 55 - 111 | 3.3e-09 | Protein tyrosine and serine/threonine kinase |
| Pkinase | PF00069 | 119 - 226 | 4.6e-10 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 125 - 230 | 8.2e-10 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 353 |
| AciI | CCGC | 2 cut(s) | 159, 770 |
| AclI | AACGTT | 2 cut(s) | 203, 522 |
| AclWI | GGATC | 2 cut(s) | 380, 393 |
| AcsI | RAATTY | 2 cut(s) | 14, 82 |
| AcyI | GRCGYC | 1 cut(s) | 773 |
| AfaI | GTAC | 1 cut(s) | 38 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 887 |
| AflII | CTTAAG | 1 cut(s) | 128 |
| AgsI | TTSAA | 6 cut(s) | 43, 88, 401, 599, 646, 783 |
| AluBI | AGCT | 6 cut(s) | 104, 127, 460, 605, 680, 688 |
| AluI | AGCT | 6 cut(s) | 104, 127, 460, 605, 680, 688 |
| Alw26I | GTCTC | 1 cut(s) | 746 |
| AlwI | GGATC | 2 cut(s) | 380, 393 |
| AoxI | GGCC | 2 cut(s) | 615, 659 |
| ApoI | RAATTY | 2 cut(s) | 14, 82 |
| AseI | ATTAAT | 1 cut(s) | 279 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 38 |
| AspS9I | GGNCC | 2 cut(s) | 92, 616 |
| AsuC2I | CCSGG | 1 cut(s) | 723 |
| AsuHPI | GGTGA | 6 cut(s) | 182, 298, 334, 768, 821, 830 |
| AvaII | GGWCC | 1 cut(s) | 92 |
| AxyI | CCTNAGG | 1 cut(s) | 498 |
| BamHI | GGATCC | 1 cut(s) | 385 |
| BccI | CCATC | 1 cut(s) | 627 |
| BciVI | GTATCC | 1 cut(s) | 371 |
| BclI | TGATCA | 1 cut(s) | 568 |
| BcnI | CCSGG | 1 cut(s) | 723 |
| BcoDI | GTCTC | 1 cut(s) | 746 |
| BfaI | CTAG | 4 cut(s) | 332, 374, 515, 689 |
| BfmI | CTRYAG | 1 cut(s) | 433 |
| BfrI | CTTAAG | 1 cut(s) | 128 |
| BfuI | GTATCC | 1 cut(s) | 371 |
| BisI | GCNGC | 1 cut(s) | 771 |
| BlsI | GCNGC | 1 cut(s) | 772 |
| BmcAI | AGTACT | 1 cut(s) | 38 |
| Bme1390I | CCNGG | 1 cut(s) | 723 |
| Bme18I | GGWCC | 1 cut(s) | 92 |
| BmgT120I | GGNCC | 2 cut(s) | 92, 616 |
| BmiI | GGNNCC | 2 cut(s) | 329, 387 |
| BmrFI | CCNGG | 1 cut(s) | 723 |
| BmsI | GCATC | 2 cut(s) | 360, 727 |
| BpuEI | CTTGAG | 1 cut(s) | 11 |
| BpuMI | CCSGG | 1 cut(s) | 723 |
| BsaBI | GATNNNNATC | 1 cut(s) | 342 |
| BsaHI | GRCGYC | 1 cut(s) | 773 |
| BsaI | GGTCTC | 1 cut(s) | 746 |
| BsaJI | CCNNGG | 1 cut(s) | 722 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 887 |
| Bse1I | ACTGG | 1 cut(s) | 831 |
| Bse21I | CCTNAGG | 1 cut(s) | 498 |
| Bse3DI | GCAATG | 1 cut(s) | 253 |
| Bse8I | GATNNNNATC | 1 cut(s) | 342 |
| BseDI | CCNNGG | 1 cut(s) | 722 |
| BseGI | GGATG | 2 cut(s) | 375, 718 |
| BseJI | GATNNNNATC | 1 cut(s) | 342 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 887 |
| BseMI | GCAATG | 1 cut(s) | 253 |
| BseMII | CTCAG | 3 cut(s) | 381, 489, 572 |
| BseNI | ACTGG | 1 cut(s) | 831 |
| BseRI | GAGGAG | 1 cut(s) | 730 |
| BshFI | GGCC | 2 cut(s) | 617, 661 |
| BsiSI | CCGG | 1 cut(s) | 722 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 887 |
| BsmAI | GTCTC | 1 cut(s) | 746 |
| BsmI | GAATGC | 1 cut(s) | 139 |
| BsnI | GGCC | 2 cut(s) | 617, 661 |
| Bso31I | GGTCTC | 1 cut(s) | 746 |
| Bsp143I | GATC | 3 cut(s) | 337, 385, 568 |
| BspACI | CCGC | 2 cut(s) | 159, 770 |
| BspANI | GGCC | 2 cut(s) | 617, 661 |
| BspCNI | CTCAG | 3 cut(s) | 382, 490, 571 |
| BspHI | TCATGA | 2 cut(s) | 571, 825 |
| BspLI | GGNNCC | 2 cut(s) | 329, 387 |
| BspPI | GGATC | 2 cut(s) | 380, 393 |
| BspQI | GCTCTTC | 1 cut(s) | 117 |
| BspTI | CTTAAG | 1 cut(s) | 128 |
| BspTNI | GGTCTC | 1 cut(s) | 746 |
| BsrDI | GCAATG | 1 cut(s) | 253 |
| BsrI | ACTGG | 1 cut(s) | 831 |
| BssECI | CCNNGG | 1 cut(s) | 722 |
| BssMI | GATC | 3 cut(s) | 337, 385, 568 |
| BssNI | GRCGYC | 1 cut(s) | 773 |
| Bst4CI | ACNGT | 1 cut(s) | 890 |
| Bst6I | CTCTTC | 3 cut(s) | 117, 416, 537 |
| BstACI | GRCGYC | 1 cut(s) | 773 |
| BstAFI | CTTAAG | 1 cut(s) | 128 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 370 |
| BstC8I | GCNNGC | 2 cut(s) | 768, 854 |
| BstDEI | CTNAG | 3 cut(s) | 390, 498, 558 |
| BstF5I | GGATG | 2 cut(s) | 375, 718 |
| BstKTI | GATC | 3 cut(s) | 340, 388, 571 |
| BstMAI | GTCTC | 1 cut(s) | 746 |
| BstMBI | GATC | 3 cut(s) | 337, 385, 568 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 370, 623, 710 |
| BstNSI | RCATGY | 1 cut(s) | 856 |
| BstSCI | CCNGG | 1 cut(s) | 721 |
| BstSFI | CTRYAG | 1 cut(s) | 433 |
| BstX2I | RGATCY | 1 cut(s) | 385 |
| BstYI | RGATCY | 1 cut(s) | 385 |
| Bsu36I | CCTNAGG | 1 cut(s) | 498 |
| BsuI | GTATCC | 1 cut(s) | 371 |
| BsuRI | GGCC | 2 cut(s) | 617, 661 |
| BtsCI | GGATG | 2 cut(s) | 375, 718 |
| BtsIMutI | CAGTG | 1 cut(s) | 410 |
| Cac8I | GCNNGC | 2 cut(s) | 768, 854 |
| CciI | TCATGA | 2 cut(s) | 571, 825 |
| Cfr13I | GGNCC | 2 cut(s) | 92, 616 |
| CseI | GACGC | 1 cut(s) | 762 |
| Csp6I | GTAC | 1 cut(s) | 37 |
| CviAII | CATG | 4 cut(s) | 572, 667, 826, 853 |
| CviQI | GTAC | 1 cut(s) | 37 |
| DdeI | CTNAG | 3 cut(s) | 390, 498, 558 |
| DpnI | GATC | 3 cut(s) | 339, 387, 570 |
| DpnII | GATC | 3 cut(s) | 337, 385, 568 |
| Eam1104I | CTCTTC | 3 cut(s) | 117, 416, 537 |
| EarI | CTCTTC | 3 cut(s) | 117, 416, 537 |
| Eco147I | AGGCCT | 1 cut(s) | 661 |
| Eco31I | GGTCTC | 1 cut(s) | 746 |
| Eco47I | GGWCC | 1 cut(s) | 92 |
| Eco81I | CCTNAGG | 1 cut(s) | 498 |
| FaeI | CATG | 4 cut(s) | 575, 670, 829, 856 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 111, 143 |
| FatI | CATG | 4 cut(s) | 571, 666, 825, 852 |
| FbaI | TGATCA | 1 cut(s) | 568 |
| FblI | GTMKAC | 1 cut(s) | 353 |
| Fnu4HI | GCNGC | 1 cut(s) | 771 |
| FokI | GGATG | 2 cut(s) | 382, 705 |
| Fsp4HI | GCNGC | 1 cut(s) | 771 |
| FspBI | CTAG | 4 cut(s) | 332, 374, 515, 689 |
| GluI | GCNGC | 1 cut(s) | 771 |
| HaeIII | GGCC | 2 cut(s) | 617, 661 |
| HapII | CCGG | 1 cut(s) | 722 |
| HgaI | GACGC | 1 cut(s) | 762 |
| Hin1I | GRCGYC | 1 cut(s) | 773 |
| Hin1II | CATG | 4 cut(s) | 575, 670, 829, 856 |
| HinfI | GANTC | 5 cut(s) | 469, 547, 562, 737, 859 |
| HpaII | CCGG | 1 cut(s) | 722 |
| HphI | GGTGA | 6 cut(s) | 182, 298, 334, 768, 821, 830 |
| Hpy166II | GTNNAC | 2 cut(s) | 193, 354 |
| Hpy188I | TCNGA | 1 cut(s) | 561 |
| Hpy188III | TCNNGA | 4 cut(s) | 389, 566, 572, 826 |
| Hpy8I | GTNNAC | 2 cut(s) | 193, 354 |
| Hpy99I | CGWCG | 1 cut(s) | 538 |
| HpyAV | CCTTC | 3 cut(s) | 167, 789, 809 |
| HpyCH4III | ACNGT | 1 cut(s) | 890 |
| HpyCH4IV | ACGT | 3 cut(s) | 203, 522, 533 |
| HpyCH4V | TGCA | 2 cut(s) | 364, 856 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 370, 623, 710 |
| HpyF3I | CTNAG | 3 cut(s) | 390, 498, 558 |
| HpySE526I | ACGT | 3 cut(s) | 203, 522, 533 |
| Hsp92I | GRCGYC | 1 cut(s) | 773 |
| Hsp92II | CATG | 4 cut(s) | 575, 670, 829, 856 |
| Ksp22I | TGATCA | 1 cut(s) | 568 |
| Kzo9I | GATC | 3 cut(s) | 337, 385, 568 |
| LguI | GCTCTTC | 1 cut(s) | 117 |
| LmnI | GCTCC | 3 cut(s) | 333, 457, 685 |
| LpnPI | CCDG | 8 cut(s) | 4, 222, 402, 510, 735, 747, 844, 881 |
| LweI | GCATC | 2 cut(s) | 360, 727 |
| MaeI | CTAG | 4 cut(s) | 332, 374, 515, 689 |
| MaeII | ACGT | 3 cut(s) | 203, 522, 533 |
| MaeIII | GTNAC | 3 cut(s) | 63, 529, 774 |
| MalI | GATC | 3 cut(s) | 339, 387, 570 |
| MboI | GATC | 3 cut(s) | 337, 385, 568 |
| MboII | GAAGA | 7 cut(s) | 16, 21, 134, 347, 389, 433, 554 |
| MflI | RGATCY | 1 cut(s) | 385 |
| MluCI | AATT | 4 cut(s) | 14, 74, 82, 165 |
| MlyI | GAGTC | 2 cut(s) | 478, 731 |
| MroXI | GAANNNNTTC | 1 cut(s) | 38 |
| MseI | TTAA | 4 cut(s) | 129, 231, 279, 638 |
| MslI | CAYNNNNRTG | 2 cut(s) | 233, 315 |
| MspA1I | CMGCKG | 1 cut(s) | 159 |
| MspCI | CTTAAG | 1 cut(s) | 128 |
| MspI | CCGG | 1 cut(s) | 722 |
| MspR9I | CCNGG | 1 cut(s) | 723 |
| Mva1269I | GAATGC | 1 cut(s) | 139 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 370, 623, 710 |
| NciI | CCSGG | 1 cut(s) | 723 |
| NdeII | GATC | 3 cut(s) | 337, 385, 568 |
| NlaIII | CATG | 4 cut(s) | 575, 670, 829, 856 |
| NlaIV | GGNNCC | 2 cut(s) | 329, 387 |
| NmuCI | GTSAC | 1 cut(s) | 774 |
| NspI | RCATGY | 1 cut(s) | 856 |
| PaeI | GCATGC | 1 cut(s) | 856 |
| PagI | TCATGA | 2 cut(s) | 571, 825 |
| PceI | AGGCCT | 1 cut(s) | 661 |
| PciSI | GCTCTTC | 1 cut(s) | 117 |
| PctI | GAATGC | 1 cut(s) | 139 |
| PdmI | GAANNNNTTC | 1 cut(s) | 38 |
| PfeI | GAWTC | 3 cut(s) | 547, 562, 859 |
| PkrI | GCNGC | 1 cut(s) | 772 |
| PleI | GAGTC | 2 cut(s) | 477, 731 |
| PpsI | GAGTC | 2 cut(s) | 477, 731 |
| PshBI | ATTAAT | 1 cut(s) | 279 |
| Psp1406I | AACGTT | 2 cut(s) | 203, 522 |
| PspN4I | GGNNCC | 2 cut(s) | 329, 387 |
| PspPI | GGNCC | 2 cut(s) | 92, 616 |
| PsuI | RGATCY | 1 cut(s) | 385 |
| RsaI | GTAC | 1 cut(s) | 38 |
| RsaNI | GTAC | 1 cut(s) | 37 |
| RseI | CAYNNNNRTG | 2 cut(s) | 233, 315 |
| SapI | GCTCTTC | 1 cut(s) | 117 |
| SaqAI | TTAA | 4 cut(s) | 129, 231, 279, 638 |
| SatI | GCNGC | 1 cut(s) | 771 |
| Sau3AI | GATC | 3 cut(s) | 337, 385, 568 |
| Sau96I | GGNCC | 2 cut(s) | 92, 616 |
| ScaI | AGTACT | 1 cut(s) | 38 |
| SchI | GAGTC | 2 cut(s) | 478, 731 |
| ScrFI | CCNGG | 1 cut(s) | 723 |
| SfaNI | GCATC | 2 cut(s) | 360, 727 |
| SfcI | CTRYAG | 1 cut(s) | 433 |
| SinI | GGWCC | 1 cut(s) | 92 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 233, 315 |
| SmlI | CTYRAG | 2 cut(s) | 26, 128 |
| SmoI | CTYRAG | 2 cut(s) | 26, 128 |
| SphI | GCATGC | 1 cut(s) | 856 |
| Sse9I | AATT | 4 cut(s) | 14, 74, 82, 165 |
| SseBI | AGGCCT | 1 cut(s) | 661 |
| SsiI | CCGC | 2 cut(s) | 159, 770 |
| SspMI | CTAG | 4 cut(s) | 332, 374, 515, 689 |
| StuI | AGGCCT | 1 cut(s) | 661 |
| StyD4I | CCNGG | 1 cut(s) | 721 |
| TaaI | ACNGT | 1 cut(s) | 890 |
| TaiI | ACGT | 3 cut(s) | 206, 525, 536 |
| TaqI | TCGA | 1 cut(s) | 150 |
| TaqII | GACCGA | 1 cut(s) | 770 |
| TasI | AATT | 4 cut(s) | 14, 74, 82, 165 |
| TatI | WGTACW | 1 cut(s) | 36 |
| TauI | GCSGC | 1 cut(s) | 773 |
| TfiI | GAWTC | 3 cut(s) | 547, 562, 859 |
| Tru1I | TTAA | 4 cut(s) | 129, 231, 279, 638 |
| Tru9I | TTAA | 4 cut(s) | 129, 231, 279, 638 |
| TscAI | CASTG | 1 cut(s) | 417 |
| TseFI | GTSAC | 1 cut(s) | 774 |
| Tsp45I | GTSAC | 1 cut(s) | 774 |
| TspDTI | ATGAA | 6 cut(s) | 17, 265, 588, 683, 828, 890 |
| TspRI | CASTG | 1 cut(s) | 417 |
| Vha464I | CTTAAG | 1 cut(s) | 128 |
| VpaK11BI | GGWCC | 1 cut(s) | 92 |
| VspI | ATTAAT | 1 cut(s) | 279 |
| XapI | RAATTY | 2 cut(s) | 14, 82 |
| XceI | RCATGY | 1 cut(s) | 856 |
| XmiI | GTMKAC | 1 cut(s) | 353 |
| XmnI | GAANNNNTTC | 1 cut(s) | 38 |
| XspI | CTAG | 4 cut(s) | 332, 374, 515, 689 |
| ZrmI | AGTACT | 1 cut(s) | 38 |