Rroxscaffold_1G00025710

Wall-associated receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000066
Physical Location & Seq
Reverse (-)
32253896 .. 32257467
3572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025710.1

Sequence Viewer

Length: 1920 bp
ATGGCTGTGCACGGGAGGATGCTAGTTATGCAACTGATCATAGCGGTGGCCATAGCAGCAGCAGCAGCTGATCGAACCCCACCTTCTCAAGCGCGACCTAACTGCCCCGACCACTGTGGTAATCTCACAATCCCATATCCTTTCGGCATCGGGCAGGGTTGTTCCCAGCGAGGATGGTTCAACCTCACTTGTGACGAATCCACCGAACCCCCAACAACACTCTGGGGCGATGGTAGTTTCACGGTTACTAATATATCGCTTGCTGAAGGTGAGTTGCAGGTTATGAATTACAGAGCCTATGATTGTTATGTTCAGCAGGGTAATCAAACAGAAGATTTGTACAGTACCCCTTCTCTCCAGTTGGTTCCTCCTTTCACCATCTCCTGGACCAGAAACAAGCTTATTGCCGTTGGCTGCGACACTTGGGCAATTTTCGTAGGGTACCGCCCTCACCCTCATGACGAAGATAGGTACATCACCGGATGCATGACTGTATGTGACAGTCTTGACAGTGCAGTTAACGATTCGTGCTCCGGCATTGGGTGTTGCGAAATTTCCATCCCTAGTGGATTCAAAAATCTCACAGTGAGTTTGAGTAGCTACTTTCAACATAAGGACGTATGGAAATTCAACCCATGCAGCTACGCCTTCATTGTGGAAGAAGAAAAGTTCACATTCAACCCTAAAACAAGTTTTGAAGAACTCAAGGACATTGAAAAACTTCCCATGATTATTAACTGGGATATTAATGAAGGGTCATGTGCTCTAGCTCAAAACAGCCCTGGTTATGCTTGCAAAGCAAATAGCAGCTGTGTTAATCGGACCATCGATAACCAGACTGAACCAATTGGTTATTATTGCCGGTGCTTCCCAGGCTTCGAAGGGAACCCATATCTCCCAGATGGTTGCCAAGATATTGACGAGTGCATGGCTCCATCAAGTCCCTGCAACAATGGAATATGCCAAAATTCACCTGGAGGATATAGCTGTTTATGTAACAAAGGTTTCAAAAACCAGGACCCAAAGAGTTGCATAGAAAACACTCCCGTGTACAAGCCGCTGAAAATTTCGTTGGGTTTGAGCTTGAGCCTTGGACTCTTATTGTTGCTTATTGGTGTATGGTTTGGATACAAACTCCTGAAGAAAAAGAATGAGATAAAACGAAAAAAGATGTTCTTCAAGCGAAATGGTGGTTTATTATTAGAACAACAATTATCGTCAGGTGAAGTTAATGTCGAGAAAATTAAATTGTTCAAATCACAAGAGTTAGAGAAGTCTACCGATAATTTTAATGTGGATAGAATTCTTGGCCAAGGAGGTCAAGGTACTGTATACAAAGGCATGTTGGAGAACGGGAGAATTGTTGCTGTGAAGAAGTGTAAAATAGTTGAGGAAAGCCAACTTTCAGAATTCATCAATGAGGTTGTCATTCTTTCCCAAATTAACCATAGAAATGTGGTTCAACTATTGGGTTGTTGTTTAGAGACAGAAGTTCCTCTTTTGGTTTATGAATTTATACCAAATGGAACTCTTTCCAAGTATATCACCGAGCAGGTTGAAGACTTTCCACTCACATGGAAAATGCGCTTACGAATTGCCACAGAAATTGCAGGAGCTCTCTCGTACTTACACTATACAGCTTCCTTTCCAATTTATCATAGAGATATCAAGTCTACAAACATACTCTTAGATGATAAATACAGAGCAAAAGTTGCTGACTTTGGAACTTCAAGATCAATTGCTATTGACCAAACTCACCTAACCACATCACTTGAACATGGCACATTCAGTTACTTGGACCCCGAATACTTTCAATCACGTCAATTTACAGAGAAAAGTGATGTGTATAGCTTTGGGGTTGTTCTTGTTGAGCTATTAACAGGACAAAAACCAATTTCTTTTCTAAGGTCGAGAGGATGA

Protein Analysis

639

Amino Acids

71.42

Weight (kDa)

5.72

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 35 - 95 6.1e-14 Wall-associated receptor kinase galacturonan-binding
EGF_CA PF07645 305 - 344 4.7e-09 Calcium-binding EGF domain
Pkinase PF00069 430 - 633 9.5e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 432 - 633 1.1e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 268, 1543
Acc65I GGTACC 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 441
AccB7I CCANNNNNTGG 1 cut(s) 384
AccI GTMKAC 3 cut(s) 1277, 1332, 1673
AccII CGCG 1 cut(s) 94
AciI CCGC 3 cut(s) 44, 445, 1058
AcoI YGGCCR 2 cut(s) 48, 1309
AcsI RAATTY 7 cut(s) 552, 626, 967, 1065, 1302, 1409, 1511
AcuI CTGAAG 2 cut(s) 285, 1160
AfaI GTAC 7 cut(s) 341, 346, 443, 473, 1052, 1327, 1625
AfiI CCNNNNNNNGG 2 cut(s) 384, 540
AjiI CACGTC 1 cut(s) 1820
AjnI CCWGG 5 cut(s) 383, 781, 871, 973, 1014
AjuI GAANNNNNNNTTGG 2 cut(s) 1055, 1087
AleI CACNNNNGTG 1 cut(s) 1046
Alw21I GWGCWC 4 cut(s) 12, 533, 766, 1618
Alw26I GTCTC 1 cut(s) 1478
Alw44I GTGCAC 1 cut(s) 8
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 2 cut(s) 48, 1309
ApaLI GTGCAC 1 cut(s) 8
ApeKI GCWGC 7 cut(s) 56, 59, 62, 65, 414, 639, 807
ApoI RAATTY 7 cut(s) 552, 626, 967, 1065, 1302, 1409, 1511
AseI ATTAAT 1 cut(s) 747
Asp700I GAANNNNTTC 4 cut(s) 720, 1531, 1563, 1809
Asp718I GGTACC 1 cut(s) 441
AspLEI GCGC 2 cut(s) 94, 1587
AspS9I GGNCC 4 cut(s) 387, 822, 1018, 1798
AsuHPI GGTGA 8 cut(s) 281, 367, 443, 469, 963, 1235, 1537, 1748
AsuII TTCGAA 1 cut(s) 879
AvaII GGWCC 4 cut(s) 387, 822, 1018, 1798
BaeGI GKGCMC 1 cut(s) 12
BalI TGGCCA 2 cut(s) 50, 1311
BanI GGYRCC 1 cut(s) 441
BanII GRGCYC 1 cut(s) 1618
BbsI GAAGAC 1 cut(s) 1566
Bbv12I GWGCWC 4 cut(s) 12, 533, 766, 1618
BbvI GCAGC 7 cut(s) 68, 71, 74, 77, 401, 651, 819
BccI CCATC 7 cut(s) 168, 224, 386, 566, 833, 896, 943
BceAI ACGGC 1 cut(s) 392
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 5 cut(s) 385, 783, 873, 975, 1016
BciVI GTATCC 1 cut(s) 1121
BclI TGATCA 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 1478
BfaI CTAG 3 cut(s) 23, 564, 767
BfuAI ACCTGC 2 cut(s) 268, 1543
BfuI GTATCC 1 cut(s) 1121
BisI GCNGC 8 cut(s) 57, 60, 63, 66, 415, 640, 808, 1058
BlsI GCNGC 8 cut(s) 58, 61, 64, 67, 416, 641, 809, 1059
Bme1390I CCNGG 5 cut(s) 385, 783, 873, 975, 1016
Bme18I GGWCC 4 cut(s) 387, 822, 1018, 1798
BmgBI CACGTC 1 cut(s) 1820
BmgT120I GGNCC 4 cut(s) 387, 822, 1018, 1798
BmiI GGNNCC 6 cut(s) 366, 443, 887, 933, 1020, 1800
BmrFI CCNGG 5 cut(s) 385, 783, 873, 975, 1016
BmrI ACTGGG 1 cut(s) 748
BmsI GCATC 3 cut(s) 9, 156, 473
BmuI ACTGGG 1 cut(s) 748
BpiI GAAGAC 1 cut(s) 1566
BpmI CTGGAG 2 cut(s) 341, 996
Bpu14I TTCGAA 1 cut(s) 879
BpuEI CTTGAG 3 cut(s) 72, 689, 1105
Bsa29I ATCGAT 1 cut(s) 828
BsaJI CCNNGG 4 cut(s) 781, 871, 1090, 1312
BsaWI WCCGGW 1 cut(s) 479
Bsc4I CCNNNNNNNGG 2 cut(s) 384, 540
Bse118I RCCGGY 1 cut(s) 861
Bse1I ACTGG 2 cut(s) 358, 743
BseBI CCWGG 5 cut(s) 385, 783, 873, 975, 1016
BseCI ATCGAT 1 cut(s) 828
BseDI CCNNGG 4 cut(s) 781, 871, 1090, 1312
BseGI GGATG 4 cut(s) 24, 179, 488, 558
BseLI CCNNNNNNNGG 2 cut(s) 384, 540
BseNI ACTGG 2 cut(s) 358, 743
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 7 cut(s) 68, 71, 74, 77, 401, 651, 819
BseYI CCCAGC 1 cut(s) 165
BsgI GTGCAG 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 94
BshFI GGCC 2 cut(s) 50, 1311
BshNI GGYRCC 1 cut(s) 441
BshVI ATCGAT 1 cut(s) 828
BsiHKAI GWGCWC 4 cut(s) 12, 533, 766, 1618
BsiSI CCGG 3 cut(s) 480, 534, 862
BslFI GGGAC 1 cut(s) 927
BslI CCNNNNNNNGG 2 cut(s) 384, 540
BsmAI GTCTC 1 cut(s) 1478
BsmFI GGGAC 1 cut(s) 927
BsnI GGCC 2 cut(s) 50, 1311
Bsp119I TTCGAA 1 cut(s) 879
Bsp1286I GDGCHC 4 cut(s) 12, 533, 766, 1618
Bsp1407I TGTACA 2 cut(s) 339, 1050
Bsp143I GATC 3 cut(s) 36, 70, 1733
BspACI CCGC 3 cut(s) 44, 445, 1058
BspANI GGCC 2 cut(s) 50, 1311
BspDI ATCGAT 1 cut(s) 828
BspFNI CGCG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 6 cut(s) 366, 443, 887, 933, 1020, 1800
BspMI ACCTGC 2 cut(s) 268, 1543
BspT104I TTCGAA 1 cut(s) 879
BspT107I GGYRCC 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 861
BsrGI TGTACA 2 cut(s) 339, 1050
BsrI ACTGG 2 cut(s) 358, 743
BssAI RCCGGY 1 cut(s) 861
BssECI CCNNGG 4 cut(s) 781, 871, 1090, 1312
BssMI GATC 3 cut(s) 36, 70, 1733
BssNAI GTATAC 1 cut(s) 1333
BssT1I CCWWGG 2 cut(s) 1090, 1312
Bst1107I GTATAC 1 cut(s) 1333
Bst2UI CCWGG 5 cut(s) 385, 783, 873, 975, 1016
Bst4CI ACNGT 8 cut(s) 116, 244, 344, 493, 503, 512, 586, 1330
BstAPI GCANNNNNTGC 1 cut(s) 1712
BstAUI TGTACA 2 cut(s) 339, 1050
BstBI TTCGAA 1 cut(s) 879
BstC8I GCNNGC 2 cut(s) 261, 793
BstDEI CTNAG 2 cut(s) 1687, 1904
BstF5I GGATG 4 cut(s) 24, 179, 488, 558
BstFNI CGCG 1 cut(s) 94
BstHHI GCGC 2 cut(s) 94, 1587
BstKTI GATC 3 cut(s) 39, 73, 1736
BstMAI GTCTC 1 cut(s) 1478
BstMBI GATC 3 cut(s) 36, 70, 1733
BstMWI GCNNNNNNNGC 7 cut(s) 28, 56, 62, 65, 797, 873, 1712
BstNI CCWGG 5 cut(s) 385, 783, 873, 975, 1016
BstNSI RCATGY 1 cut(s) 1345
BstSCI CCNGG 5 cut(s) 383, 781, 871, 973, 1014
BstSLI GKGCMC 1 cut(s) 12
BstUI CGCG 1 cut(s) 94
BstV1I GCAGC 7 cut(s) 68, 71, 74, 77, 401, 651, 819
BstV2I GAAGAC 1 cut(s) 1566
BstXI CCANNNNNNTGG 1 cut(s) 1575
BstZ17I GTATAC 1 cut(s) 1333
Bsu15I ATCGAT 1 cut(s) 828
BsuI GTATCC 1 cut(s) 1121
BsuRI GGCC 2 cut(s) 50, 1311
BsuTUI ATCGAT 1 cut(s) 828
BtgZI GCGATG 1 cut(s) 243
BtrI CACGTC 1 cut(s) 1820
BtsCI GGATG 4 cut(s) 24, 179, 488, 558
BtsIMutI CAGTG 3 cut(s) 112, 517, 591
BveI ACCTGC 2 cut(s) 268, 1543
Cac8I GCNNGC 2 cut(s) 261, 793
CaiI CAGNNNCTG 1 cut(s) 68
CciI TCATGA 1 cut(s) 457
CfoI GCGC 2 cut(s) 94, 1587
Cfr10I RCCGGY 1 cut(s) 861
Cfr13I GGNCC 4 cut(s) 387, 822, 1018, 1798
ClaI ATCGAT 1 cut(s) 828
Csp6I GTAC 7 cut(s) 340, 345, 442, 472, 1051, 1326, 1624
CspCI CAANNNNNGTGG 4 cut(s) 1588, 1623, 1753, 1788
CviAII CATG 9 cut(s) 458, 487, 636, 727, 759, 928, 1342, 1575, 1778
CviQI GTAC 7 cut(s) 340, 345, 442, 472, 1051, 1326, 1624
DdeI CTNAG 2 cut(s) 1687, 1904
DpnI GATC 3 cut(s) 38, 72, 1735
DpnII GATC 3 cut(s) 36, 70, 1733
EaeI YGGCCR 2 cut(s) 48, 1309
Ecl136II GAGCTC 1 cut(s) 1616
Eco130I CCWWGG 2 cut(s) 1090, 1312
Eco24I GRGCYC 1 cut(s) 1618
Eco32I GATATC 1 cut(s) 1666
Eco47I GGWCC 4 cut(s) 387, 822, 1018, 1798
Eco53kI GAGCTC 1 cut(s) 1616
Eco57I CTGAAG 2 cut(s) 285, 1160
EcoICRI GAGCTC 1 cut(s) 1616
EcoO109I RGGNCCY 1 cut(s) 1018
EcoRI GAATTC 2 cut(s) 1302, 1409
EcoRII CCWGG 5 cut(s) 383, 781, 871, 973, 1014
EcoRV GATATC 1 cut(s) 1666
EcoT14I CCWWGG 2 cut(s) 1090, 1312
EcoT22I ATGCAT 1 cut(s) 488
EcoT38I GRGCYC 1 cut(s) 1618
ErhI CCWWGG 2 cut(s) 1090, 1312
FaeI CATG 9 cut(s) 461, 490, 639, 730, 762, 931, 1345, 1578, 1781
FalI AAGNNNNNCTT 4 cut(s) 1160, 1192, 1482, 1514
FaqI GGGAC 1 cut(s) 927
FatI CATG 9 cut(s) 457, 486, 635, 726, 758, 927, 1341, 1574, 1777
FbaI TGATCA 1 cut(s) 36
FblI GTMKAC 3 cut(s) 1277, 1332, 1673
Fnu4HI GCNGC 8 cut(s) 57, 60, 63, 66, 415, 640, 808, 1058
FokI GGATG 4 cut(s) 31, 186, 495, 545
FriOI GRGCYC 1 cut(s) 1618
Fsp4HI GCNGC 8 cut(s) 57, 60, 63, 66, 415, 640, 808, 1058
FspBI CTAG 3 cut(s) 23, 564, 767
GlaI GCGC 2 cut(s) 93, 1586
GluI GCNGC 8 cut(s) 57, 60, 63, 66, 415, 640, 808, 1058
GsaI CCCAGC 1 cut(s) 169
GsuI CTGGAG 2 cut(s) 341, 996
HaeIII GGCC 2 cut(s) 50, 1311
HapII CCGG 3 cut(s) 480, 534, 862
HhaI GCGC 2 cut(s) 94, 1587
Hin1II CATG 9 cut(s) 461, 490, 639, 730, 762, 931, 1345, 1578, 1781
Hin6I GCGC 2 cut(s) 92, 1585
HinP1I GCGC 2 cut(s) 92, 1585
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 4 cut(s) 197, 524, 570, 1095
HpaI GTTAAC 1 cut(s) 520
HpaII CCGG 3 cut(s) 480, 534, 862
HphI GGTGA 8 cut(s) 281, 367, 443, 469, 963, 1235, 1537, 1748
Hpy166II GTNNAC 7 cut(s) 10, 520, 672, 1051, 1278, 1333, 1674
Hpy188I TCNGA 2 cut(s) 822, 1408
Hpy188III TCNNGA 6 cut(s) 458, 506, 1138, 1237, 1731, 1911
Hpy8I GTNNAC 7 cut(s) 10, 520, 672, 1051, 1278, 1333, 1674
HpyAV CCTTC 6 cut(s) 93, 260, 360, 658, 746, 875
HpyCH4III ACNGT 8 cut(s) 116, 244, 344, 493, 503, 512, 586, 1330
HpyCH4IV ACGT 2 cut(s) 618, 1819
HpyF10VI GCNNNNNNNGC 7 cut(s) 28, 56, 62, 65, 797, 873, 1712
HpyF3I CTNAG 2 cut(s) 1687, 1904
HpySE526I ACGT 2 cut(s) 618, 1819
Hsp92II CATG 9 cut(s) 461, 490, 639, 730, 762, 931, 1345, 1578, 1781
HspAI GCGC 2 cut(s) 92, 1585
KpnI GGTACC 1 cut(s) 445
Ksp22I TGATCA 1 cut(s) 36
KspAI GTTAAC 1 cut(s) 520
Kzo9I GATC 3 cut(s) 36, 70, 1733
LmnI GCTCC 3 cut(s) 536, 937, 1613
Lsp1109I GCAGC 7 cut(s) 68, 71, 74, 77, 401, 651, 819
LweI GCATC 3 cut(s) 9, 156, 473
MaeI CTAG 3 cut(s) 23, 564, 767
MaeII ACGT 2 cut(s) 618, 1819
MaeIII GTNAC 5 cut(s) 191, 244, 497, 995, 1790
MalI GATC 3 cut(s) 38, 72, 1735
MboI GATC 3 cut(s) 36, 70, 1733
MboII GAAGA 9 cut(s) 344, 476, 671, 674, 710, 1153, 1168, 1384, 1571
MfeI CAATTG 2 cut(s) 846, 1737
MhlI GDGCHC 4 cut(s) 12, 533, 766, 1618
MlsI TGGCCA 2 cut(s) 50, 1311
MluNI TGGCCA 2 cut(s) 50, 1311
MlyI GAGTC 1 cut(s) 1089
MmeI TCCRAC 1 cut(s) 1326
Mox20I TGGCCA 2 cut(s) 50, 1311
Mph1103I ATGCAT 1 cut(s) 488
MroXI GAANNNNTTC 4 cut(s) 720, 1531, 1563, 1809
MscI TGGCCA 2 cut(s) 50, 1311
MseI TTAA 9 cut(s) 519, 735, 747, 816, 1230, 1245, 1290, 1443, 1877
MslI CAYNNNNRTG 5 cut(s) 44, 456, 1046, 1452, 1573
Msp20I TGGCCA 2 cut(s) 50, 1311
MspA1I CMGCKG 3 cut(s) 68, 810, 1060
MspI CCGG 3 cut(s) 480, 534, 862
MspR9I CCNGG 5 cut(s) 385, 783, 873, 975, 1016
MunI CAATTG 2 cut(s) 846, 1737
MvaI CCWGG 5 cut(s) 385, 783, 873, 975, 1016
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 7 cut(s) 28, 56, 62, 65, 797, 873, 1712
NdeII GATC 3 cut(s) 36, 70, 1733
NlaIII CATG 9 cut(s) 461, 490, 639, 730, 762, 931, 1345, 1578, 1781
NlaIV GGNNCC 6 cut(s) 366, 443, 887, 933, 1020, 1800
NmuCI GTSAC 2 cut(s) 191, 497
NsiI ATGCAT 1 cut(s) 488
NspI RCATGY 1 cut(s) 1345
NspV TTCGAA 1 cut(s) 879
OliI CACNNNNGTG 1 cut(s) 1046
PagI TCATGA 1 cut(s) 457
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdmI GAANNNNTTC 4 cut(s) 720, 1531, 1563, 1809
PfeI GAWTC 3 cut(s) 197, 524, 570
PflMI CCANNNNNTGG 1 cut(s) 384
PfoI TCCNGGA 1 cut(s) 383
PkrI GCNGC 8 cut(s) 58, 61, 64, 67, 416, 641, 809, 1059
PleI GAGTC 1 cut(s) 1089
PpsI GAGTC 1 cut(s) 1089
PpuMI RGGWCCY 1 cut(s) 1018
PshBI ATTAAT 1 cut(s) 747
Psp124BI GAGCTC 1 cut(s) 1618
Psp5II RGGWCCY 1 cut(s) 1018
Psp6I CCWGG 5 cut(s) 383, 781, 871, 973, 1014
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 5 cut(s) 383, 781, 871, 973, 1014
PspN4I GGNNCC 6 cut(s) 366, 443, 887, 933, 1020, 1800
PspPI GGNCC 4 cut(s) 387, 822, 1018, 1798
PspPPI RGGWCCY 1 cut(s) 1018
PstNI CAGNNNCTG 1 cut(s) 68
PvuII CAGCTG 2 cut(s) 68, 810
RsaI GTAC 7 cut(s) 341, 346, 443, 473, 1052, 1327, 1625
RsaNI GTAC 7 cut(s) 340, 345, 442, 472, 1051, 1326, 1624
RseI CAYNNNNRTG 5 cut(s) 44, 456, 1046, 1452, 1573
SacI GAGCTC 1 cut(s) 1618
SaqAI TTAA 9 cut(s) 519, 735, 747, 816, 1230, 1245, 1290, 1443, 1877
SatI GCNGC 8 cut(s) 57, 60, 63, 66, 415, 640, 808, 1058
Sau3AI GATC 3 cut(s) 36, 70, 1733
Sau96I GGNCC 4 cut(s) 387, 822, 1018, 1798
SchI GAGTC 1 cut(s) 1089
ScrFI CCNGG 5 cut(s) 385, 783, 873, 975, 1016
SduI GDGCHC 4 cut(s) 12, 533, 766, 1618
SfaNI GCATC 3 cut(s) 9, 156, 473
SfuI TTCGAA 1 cut(s) 879
SinI GGWCC 4 cut(s) 387, 822, 1018, 1798
SmiMI CAYNNNNRTG 5 cut(s) 44, 456, 1046, 1452, 1573
SmlI CTYRAG 3 cut(s) 87, 704, 1084
SmoI CTYRAG 3 cut(s) 87, 704, 1084
SsiI CCGC 3 cut(s) 44, 445, 1058
SspMI CTAG 3 cut(s) 23, 564, 767
SstI GAGCTC 1 cut(s) 1618
StyD4I CCNGG 5 cut(s) 383, 781, 871, 973, 1014
StyI CCWWGG 2 cut(s) 1090, 1312
TaaI ACNGT 8 cut(s) 116, 244, 344, 493, 503, 512, 586, 1330
TaiI ACGT 2 cut(s) 621, 1822
TaqI TCGA 5 cut(s) 73, 828, 879, 1236, 1910
TatI WGTACW 2 cut(s) 339, 1050
TauI GCSGC 1 cut(s) 1060
TfiI GAWTC 3 cut(s) 197, 524, 570
Tru1I TTAA 9 cut(s) 519, 735, 747, 816, 1230, 1245, 1290, 1443, 1877
Tru9I TTAA 9 cut(s) 519, 735, 747, 816, 1230, 1245, 1290, 1443, 1877
TscAI CASTG 3 cut(s) 119, 517, 591
TseFI GTSAC 2 cut(s) 191, 497
TseI GCWGC 7 cut(s) 56, 59, 62, 65, 414, 639, 807
Tsp45I GTSAC 2 cut(s) 191, 497
TspDTI ATGAA 5 cut(s) 299, 640, 765, 1402, 1524
TspRI CASTG 3 cut(s) 119, 517, 591
Van91I CCANNNNNTGG 1 cut(s) 384
VneI GTGCAC 1 cut(s) 8
VpaK11BI GGWCC 4 cut(s) 387, 822, 1018, 1798
VspI ATTAAT 1 cut(s) 747
XapI RAATTY 7 cut(s) 552, 626, 967, 1065, 1302, 1409, 1511
XceI RCATGY 1 cut(s) 1345
XcmI CCANNNNNNNNNTGG 2 cut(s) 219, 971
XmiI GTMKAC 3 cut(s) 1277, 1332, 1673
XmnI GAANNNNTTC 4 cut(s) 720, 1531, 1563, 1809
XspI CTAG 3 cut(s) 23, 564, 767
Zsp2I ATGCAT 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.