specification of plant organ axis polarity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| GUB_WAK_bind | PF13947 | 33 - 92 | 5.9e-10 | Wall-associated receptor kinase galacturonan-binding |
| EGF_CA | PF07645 | 296 - 336 | 7.7e-07 | Calcium-binding EGF domain |
| Pkinase | PF00069 | 422 - 622 | 1.3e-43 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 425 - 618 | 6e-45 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 780 |
| AatII | GACGTC | 1 cut(s) | 1812 |
| Acc36I | ACCTGC | 2 cut(s) | 168, 780 |
| Acc65I | GGTACC | 1 cut(s) | 355 |
| AccB1I | GGYRCC | 3 cut(s) | 355, 792, 1364 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 812 |
| AccI | GTMKAC | 4 cut(s) | 1308, 1318, 1482, 1670 |
| AciI | CCGC | 3 cut(s) | 47, 111, 739 |
| AcsI | RAATTY | 6 cut(s) | 170, 449, 937, 1092, 1224, 1941 |
| AcyI | GRCGYC | 1 cut(s) | 1809 |
| AfaI | GTAC | 6 cut(s) | 55, 357, 365, 562, 1151, 1830 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 812 |
| AgsI | TTSAA | 7 cut(s) | 280, 1023, 1156, 1550, 1785, 1917, 1936 |
| AjnI | CCWGG | 3 cut(s) | 91, 844, 946 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 374, 406 |
| Alw21I | GWGCWC | 2 cut(s) | 935, 1518 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 74, 77, 1005 |
| Ama87I | CYCGRG | 1 cut(s) | 1369 |
| AoxI | GGCC | 4 cut(s) | 717, 803, 1251, 1874 |
| ApeKI | GCWGC | 9 cut(s) | 71, 74, 77, 96, 618, 879, 1005, 1568, 1643 |
| ApoI | RAATTY | 6 cut(s) | 170, 449, 937, 1092, 1224, 1941 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 767 |
| Asp718I | GGTACC | 1 cut(s) | 355 |
| AspLEI | GCGC | 1 cut(s) | 518 |
| AspS9I | GGNCC | 5 cut(s) | 717, 905, 1205, 1251, 1765 |
| AsuHPI | GGTGA | 1 cut(s) | 933 |
| AvaI | CYCGRG | 1 cut(s) | 1369 |
| AvaII | GGWCC | 3 cut(s) | 905, 1205, 1765 |
| AxyI | CCTNAGG | 1 cut(s) | 1878 |
| BaeGI | GKGCMC | 1 cut(s) | 1369 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 347, 380 |
| BanI | GGYRCC | 3 cut(s) | 355, 792, 1364 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 140, 172, 1458, 1490 |
| Bbv12I | GWGCWC | 2 cut(s) | 935, 1518 |
| BbvI | GCAGC | 9 cut(s) | 61, 64, 83, 83, 630, 866, 992, 1580, 1655 |
| BccI | CCATC | 3 cut(s) | 869, 876, 1919 |
| BceAI | ACGGC | 3 cut(s) | 225, 383, 1006 |
| BciT130I | CCWGG | 3 cut(s) | 93, 846, 948 |
| BciVI | GTATCC | 2 cut(s) | 971, 1751 |
| BclI | TGATCA | 1 cut(s) | 304 |
| BfaI | CTAG | 4 cut(s) | 254, 534, 1730, 1832 |
| BfmI | CTRYAG | 4 cut(s) | 616, 819, 1233, 1813 |
| BfoI | RGCGCY | 1 cut(s) | 519 |
| BfuAI | ACCTGC | 2 cut(s) | 168, 780 |
| BfuI | GTATCC | 2 cut(s) | 971, 1751 |
| BmcAI | AGTACT | 2 cut(s) | 55, 1151 |
| Bme1390I | CCNGG | 3 cut(s) | 93, 846, 948 |
| Bme18I | GGWCC | 3 cut(s) | 905, 1205, 1765 |
| BmeT110I | CYCGRG | 1 cut(s) | 1369 |
| BmgT120I | GGNCC | 5 cut(s) | 717, 905, 1205, 1251, 1765 |
| BmiI | GGNNCC | 8 cut(s) | 230, 357, 794, 906, 907, 1207, 1366, 1767 |
| BmrFI | CCNGG | 3 cut(s) | 93, 846, 948 |
| BmrI | ACTGGG | 2 cut(s) | 468, 537 |
| BmsI | GCATC | 3 cut(s) | 546, 1017, 1880 |
| BmuI | ACTGGG | 2 cut(s) | 468, 537 |
| BpmI | CTGGAG | 1 cut(s) | 930 |
| BpuEI | CTTGAG | 3 cut(s) | 66, 1019, 1265 |
| BsaHI | GRCGYC | 1 cut(s) | 1809 |
| BsaJI | CCNNGG | 5 cut(s) | 91, 947, 988, 1209, 1498 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1194, 1224 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 812 |
| Bse118I | RCCGGY | 1 cut(s) | 834 |
| Bse1I | ACTGG | 6 cut(s) | 328, 463, 543, 666, 1194, 1619 |
| Bse21I | CCTNAGG | 1 cut(s) | 1878 |
| Bse3DI | GCAATG | 3 cut(s) | 5, 322, 630 |
| BseBI | CCWGG | 3 cut(s) | 93, 846, 948 |
| BseDI | CCNNGG | 5 cut(s) | 91, 947, 988, 1209, 1498 |
| BseGI | GGATG | 2 cut(s) | 537, 868 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 812 |
| BseMI | GCAATG | 3 cut(s) | 5, 322, 630 |
| BseMII | CTCAG | 2 cut(s) | 767, 1869 |
| BseNI | ACTGG | 6 cut(s) | 328, 463, 543, 666, 1194, 1619 |
| BseRI | GAGGAG | 1 cut(s) | 1594 |
| BseSI | GKGCMC | 1 cut(s) | 1369 |
| BseXI | GCAGC | 9 cut(s) | 61, 64, 83, 83, 630, 866, 992, 1580, 1655 |
| BseYI | CCCAGC | 1 cut(s) | 518 |
| BsgI | GTGCAG | 1 cut(s) | 536 |
| BshFI | GGCC | 4 cut(s) | 719, 805, 1253, 1876 |
| BshNI | GGYRCC | 3 cut(s) | 355, 792, 1364 |
| BsiHKAI | GWGCWC | 2 cut(s) | 935, 1518 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1369 |
| BsiSI | CCGG | 1 cut(s) | 835 |
| BslFI | GGGAC | 5 cut(s) | 617, 891, 1191, 1516, 1762 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 812 |
| BsmFI | GGGAC | 5 cut(s) | 617, 891, 1191, 1516, 1762 |
| BsnI | GGCC | 4 cut(s) | 719, 805, 1253, 1876 |
| BsoBI | CYCGRG | 1 cut(s) | 1369 |
| Bsp1286I | GDGCHC | 3 cut(s) | 935, 1369, 1518 |
| Bsp143I | GATC | 2 cut(s) | 304, 1532 |
| Bsp19I | CCATGG | 1 cut(s) | 1498 |
| BspACI | CCGC | 3 cut(s) | 47, 111, 739 |
| BspANI | GGCC | 4 cut(s) | 719, 805, 1253, 1876 |
| BspCNI | CTCAG | 2 cut(s) | 766, 1870 |
| BspLI | GGNNCC | 8 cut(s) | 230, 357, 794, 906, 907, 1207, 1366, 1767 |
| BspMAI | CTGCAG | 2 cut(s) | 620, 1237 |
| BspMI | ACCTGC | 2 cut(s) | 168, 780 |
| BspT107I | GGYRCC | 3 cut(s) | 355, 792, 1364 |
| BsrDI | GCAATG | 3 cut(s) | 5, 322, 630 |
| BsrFI | RCCGGY | 1 cut(s) | 834 |
| BsrI | ACTGG | 6 cut(s) | 328, 463, 543, 666, 1194, 1619 |
| BssAI | RCCGGY | 1 cut(s) | 834 |
| BssECI | CCNNGG | 5 cut(s) | 91, 947, 988, 1209, 1498 |
| BssMI | GATC | 2 cut(s) | 304, 1532 |
| BssNAI | GTATAC | 4 cut(s) | 1309, 1319, 1483, 1671 |
| BssNI | GRCGYC | 1 cut(s) | 1809 |
| BssT1I | CCWWGG | 1 cut(s) | 1498 |
| Bst1107I | GTATAC | 4 cut(s) | 1309, 1319, 1483, 1671 |
| Bst2UI | CCWGG | 3 cut(s) | 93, 846, 948 |
| Bst4CI | ACNGT | 3 cut(s) | 238, 565, 696 |
| BstACI | GRCGYC | 1 cut(s) | 1809 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 77 |
| BstC8I | GCNNGC | 3 cut(s) | 775, 842, 1191 |
| BstDEI | CTNAG | 2 cut(s) | 753, 1878 |
| BstDSI | CCRYGG | 3 cut(s) | 988, 1209, 1498 |
| BstF5I | GGATG | 2 cut(s) | 537, 868 |
| BstH2I | RGCGCY | 1 cut(s) | 519 |
| BstHHI | GCGC | 1 cut(s) | 518 |
| BstKTI | GATC | 2 cut(s) | 307, 1535 |
| BstMBI | GATC | 2 cut(s) | 304, 1532 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 77, 83, 534, 632, 779, 831, 1293, 1577 |
| BstNI | CCWGG | 3 cut(s) | 93, 846, 948 |
| BstNSI | RCATGY | 1 cut(s) | 777 |
| BstSCI | CCNGG | 3 cut(s) | 91, 844, 946 |
| BstSFI | CTRYAG | 4 cut(s) | 616, 819, 1233, 1813 |
| BstSLI | GKGCMC | 1 cut(s) | 1369 |
| BstV1I | GCAGC | 9 cut(s) | 61, 64, 83, 83, 630, 866, 992, 1580, 1655 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 875 |
| BstZ17I | GTATAC | 4 cut(s) | 1309, 1319, 1483, 1671 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1878 |
| BsuI | GTATCC | 2 cut(s) | 971, 1751 |
| BsuRI | GGCC | 4 cut(s) | 719, 805, 1253, 1876 |
| BtgI | CCRYGG | 3 cut(s) | 988, 1209, 1498 |
| BtgZI | GCGATG | 1 cut(s) | 1008 |
| BtsCI | GGATG | 2 cut(s) | 537, 868 |
| BtsIMutI | CAGTG | 2 cut(s) | 234, 550 |
| BveI | ACCTGC | 2 cut(s) | 168, 780 |
| Cac8I | GCNNGC | 3 cut(s) | 775, 842, 1191 |
| CaiI | CAGNNNCTG | 3 cut(s) | 74, 77, 1005 |
| CfoI | GCGC | 1 cut(s) | 518 |
| Cfr10I | RCCGGY | 1 cut(s) | 834 |
| Cfr13I | GGNCC | 5 cut(s) | 717, 905, 1205, 1251, 1765 |
| Csp6I | GTAC | 6 cut(s) | 54, 356, 364, 561, 1150, 1829 |
| CviAII | CATG | 6 cut(s) | 142, 774, 1098, 1199, 1268, 1499 |
| CviQI | GTAC | 6 cut(s) | 54, 356, 364, 561, 1150, 1829 |
| DdeI | CTNAG | 2 cut(s) | 753, 1878 |
| DpnI | GATC | 2 cut(s) | 306, 1534 |
| DpnII | GATC | 2 cut(s) | 304, 1532 |
| DraI | TTTAAA | 1 cut(s) | 673 |
| Eco130I | CCWWGG | 1 cut(s) | 1498 |
| Eco147I | AGGCCT | 1 cut(s) | 1876 |
| Eco47I | GGWCC | 3 cut(s) | 905, 1205, 1765 |
| Eco81I | CCTNAGG | 1 cut(s) | 1878 |
| Eco88I | CYCGRG | 1 cut(s) | 1369 |
| EcoO109I | RGGNCCY | 2 cut(s) | 905, 1205 |
| EcoRI | GAATTC | 1 cut(s) | 170 |
| EcoRII | CCWGG | 3 cut(s) | 91, 844, 946 |
| EcoT14I | CCWWGG | 1 cut(s) | 1498 |
| ErhI | CCWWGG | 1 cut(s) | 1498 |
| FaeI | CATG | 6 cut(s) | 145, 777, 1101, 1202, 1271, 1502 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1845, 1877 |
| FaqI | GGGAC | 5 cut(s) | 617, 891, 1191, 1516, 1762 |
| FatI | CATG | 6 cut(s) | 141, 773, 1097, 1198, 1267, 1498 |
| FbaI | TGATCA | 1 cut(s) | 304 |
| FblI | GTMKAC | 4 cut(s) | 1308, 1318, 1482, 1670 |
| FokI | GGATG | 2 cut(s) | 524, 855 |
| FspBI | CTAG | 4 cut(s) | 254, 534, 1730, 1832 |
| GlaI | GCGC | 1 cut(s) | 517 |
| GsaI | CCCAGC | 1 cut(s) | 522 |
| GsuI | CTGGAG | 1 cut(s) | 930 |
| HaeII | RGCGCY | 1 cut(s) | 519 |
| HaeIII | GGCC | 4 cut(s) | 719, 805, 1253, 1876 |
| HapII | CCGG | 1 cut(s) | 835 |
| HhaI | GCGC | 1 cut(s) | 518 |
| Hin1I | GRCGYC | 1 cut(s) | 1809 |
| Hin1II | CATG | 6 cut(s) | 145, 777, 1101, 1202, 1271, 1502 |
| Hin6I | GCGC | 1 cut(s) | 516 |
| HinP1I | GCGC | 1 cut(s) | 516 |
| HincII | GTYRAC | 1 cut(s) | 1393 |
| HindII | GTYRAC | 1 cut(s) | 1393 |
| HinfI | GANTC | 4 cut(s) | 12, 1019, 1372, 1504 |
| HpaII | CCGG | 1 cut(s) | 835 |
| HphI | GGTGA | 1 cut(s) | 933 |
| Hpy166II | GTNNAC | 8 cut(s) | 366, 548, 1213, 1309, 1319, 1393, 1483, 1671 |
| Hpy188I | TCNGA | 6 cut(s) | 103, 376, 437, 756, 1377, 1687 |
| Hpy188III | TCNNGA | 3 cut(s) | 308, 872, 1631 |
| Hpy8I | GTNNAC | 8 cut(s) | 366, 548, 1213, 1309, 1319, 1393, 1483, 1671 |
| HpyAV | CCTTC | 4 cut(s) | 142, 637, 757, 848 |
| HpyCH4III | ACNGT | 3 cut(s) | 238, 565, 696 |
| HpyCH4IV | ACGT | 4 cut(s) | 258, 1702, 1751, 1809 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 77, 83, 534, 632, 779, 831, 1293, 1577 |
| HpyF3I | CTNAG | 2 cut(s) | 753, 1878 |
| HpySE526I | ACGT | 4 cut(s) | 258, 1702, 1751, 1809 |
| Hsp92I | GRCGYC | 1 cut(s) | 1809 |
| Hsp92II | CATG | 6 cut(s) | 145, 777, 1101, 1202, 1271, 1502 |
| HspAI | GCGC | 1 cut(s) | 516 |
| KflI | GGGWCCC | 1 cut(s) | 905 |
| KpnI | GGTACC | 1 cut(s) | 359 |
| Ksp22I | TGATCA | 1 cut(s) | 304 |
| Kzo9I | GATC | 2 cut(s) | 304, 1532 |
| LmnI | GCTCC | 4 cut(s) | 39, 1002, 1583, 1694 |
| Lsp1109I | GCAGC | 9 cut(s) | 61, 64, 83, 83, 630, 866, 992, 1580, 1655 |
| LweI | GCATC | 3 cut(s) | 546, 1017, 1880 |
| MaeI | CTAG | 4 cut(s) | 254, 534, 1730, 1832 |
| MaeII | ACGT | 4 cut(s) | 258, 1702, 1751, 1809 |
| MaeIII | GTNAC | 9 cut(s) | 155, 238, 407, 454, 953, 968, 1176, 1805, 1928 |
| MalI | GATC | 2 cut(s) | 306, 1534 |
| MboI | GATC | 2 cut(s) | 304, 1532 |
| MboII | GAAGA | 3 cut(s) | 157, 1573, 1934 |
| MfeI | CAATTG | 1 cut(s) | 181 |
| MhlI | GDGCHC | 3 cut(s) | 935, 1369, 1518 |
| MlyI | GAGTC | 3 cut(s) | 6, 1381, 1498 |
| MroXI | GAANNNNTTC | 1 cut(s) | 767 |
| MseI | TTAA | 6 cut(s) | 609, 672, 711, 1134, 1419, 1962 |
| MslI | CAYNNNNRTG | 6 cut(s) | 594, 873, 993, 1102, 1428, 1632 |
| MspA1I | CMGCKG | 4 cut(s) | 47, 74, 741, 1571 |
| MspI | CCGG | 1 cut(s) | 835 |
| MspR9I | CCNGG | 3 cut(s) | 93, 846, 948 |
| MunI | CAATTG | 1 cut(s) | 181 |
| MvaI | CCWGG | 3 cut(s) | 93, 846, 948 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 77, 83, 534, 632, 779, 831, 1293, 1577 |
| NcoI | CCATGG | 1 cut(s) | 1498 |
| NdeII | GATC | 2 cut(s) | 304, 1532 |
| NlaIII | CATG | 6 cut(s) | 145, 777, 1101, 1202, 1271, 1502 |
| NlaIV | GGNNCC | 8 cut(s) | 230, 357, 794, 906, 907, 1207, 1366, 1767 |
| NmuCI | GTSAC | 3 cut(s) | 407, 968, 1805 |
| NspI | RCATGY | 1 cut(s) | 777 |
| PaeI | GCATGC | 1 cut(s) | 777 |
| PaqCI | CACCTGC | 1 cut(s) | 780 |
| PceI | AGGCCT | 1 cut(s) | 1876 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 433, 1401 |
| PdmI | GAANNNNTTC | 1 cut(s) | 767 |
| PfeI | GAWTC | 1 cut(s) | 1019 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 812 |
| PleI | GAGTC | 3 cut(s) | 6, 1380, 1498 |
| PpsI | GAGTC | 3 cut(s) | 6, 1380, 1498 |
| PpuMI | RGGWCCY | 2 cut(s) | 905, 1205 |
| Psp5II | RGGWCCY | 2 cut(s) | 905, 1205 |
| Psp6I | CCWGG | 3 cut(s) | 91, 844, 946 |
| PspFI | CCCAGC | 1 cut(s) | 518 |
| PspGI | CCWGG | 3 cut(s) | 91, 844, 946 |
| PspN4I | GGNNCC | 8 cut(s) | 230, 357, 794, 906, 907, 1207, 1366, 1767 |
| PspPI | GGNCC | 5 cut(s) | 717, 905, 1205, 1251, 1765 |
| PspPPI | RGGWCCY | 2 cut(s) | 905, 1205 |
| PstI | CTGCAG | 2 cut(s) | 620, 1237 |
| PstNI | CAGNNNCTG | 3 cut(s) | 74, 77, 1005 |
| PvuII | CAGCTG | 2 cut(s) | 74, 1571 |
| RsaI | GTAC | 6 cut(s) | 55, 357, 365, 562, 1151, 1830 |
| RsaNI | GTAC | 6 cut(s) | 54, 356, 364, 561, 1150, 1829 |
| RseI | CAYNNNNRTG | 6 cut(s) | 594, 873, 993, 1102, 1428, 1632 |
| SaqAI | TTAA | 6 cut(s) | 609, 672, 711, 1134, 1419, 1962 |
| Sau3AI | GATC | 2 cut(s) | 304, 1532 |
| Sau96I | GGNCC | 5 cut(s) | 717, 905, 1205, 1251, 1765 |
| ScaI | AGTACT | 2 cut(s) | 55, 1151 |
| SchI | GAGTC | 3 cut(s) | 6, 1381, 1498 |
| ScrFI | CCNGG | 3 cut(s) | 93, 846, 948 |
| SduI | GDGCHC | 3 cut(s) | 935, 1369, 1518 |
| SfaNI | GCATC | 3 cut(s) | 546, 1017, 1880 |
| SfcI | CTRYAG | 4 cut(s) | 616, 819, 1233, 1813 |
| SinI | GGWCC | 3 cut(s) | 905, 1205, 1765 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 594, 873, 993, 1102, 1428, 1632 |
| SmlI | CTYRAG | 3 cut(s) | 81, 1034, 1244 |
| SmoI | CTYRAG | 3 cut(s) | 81, 1034, 1244 |
| SphI | GCATGC | 1 cut(s) | 777 |
| SseBI | AGGCCT | 1 cut(s) | 1876 |
| SsiI | CCGC | 3 cut(s) | 47, 111, 739 |
| SspI | AATATT | 2 cut(s) | 276, 1651 |
| SspMI | CTAG | 4 cut(s) | 254, 534, 1730, 1832 |
| StuI | AGGCCT | 1 cut(s) | 1876 |
| StyD4I | CCNGG | 3 cut(s) | 91, 844, 946 |
| StyI | CCWWGG | 1 cut(s) | 1498 |
| TaaI | ACNGT | 3 cut(s) | 238, 565, 696 |
| TaiI | ACGT | 4 cut(s) | 261, 1705, 1754, 1812 |
| TaqI | TCGA | 2 cut(s) | 427, 1630 |
| TatI | WGTACW | 2 cut(s) | 53, 1149 |
| TauI | GCSGC | 1 cut(s) | 114 |
| TfiI | GAWTC | 1 cut(s) | 1019 |
| Tru1I | TTAA | 6 cut(s) | 609, 672, 711, 1134, 1419, 1962 |
| Tru9I | TTAA | 6 cut(s) | 609, 672, 711, 1134, 1419, 1962 |
| TscAI | CASTG | 2 cut(s) | 241, 550 |
| TseFI | GTSAC | 3 cut(s) | 407, 968, 1805 |
| TseI | GCWGC | 9 cut(s) | 71, 74, 77, 96, 618, 879, 1005, 1568, 1643 |
| Tsp45I | GTSAC | 3 cut(s) | 407, 968, 1805 |
| TspGWI | ACGGA | 1 cut(s) | 351 |
| TspRI | CASTG | 2 cut(s) | 241, 550 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 812 |
| VpaK11BI | GGWCC | 3 cut(s) | 905, 1205, 1765 |
| XapI | RAATTY | 6 cut(s) | 170, 449, 937, 1092, 1224, 1941 |
| XceI | RCATGY | 1 cut(s) | 777 |
| XmiI | GTMKAC | 4 cut(s) | 1308, 1318, 1482, 1670 |
| XmnI | GAANNNNTTC | 1 cut(s) | 767 |
| XspI | CTAG | 4 cut(s) | 254, 534, 1730, 1832 |
| ZraI | GACGTC | 1 cut(s) | 1810 |
| ZrmI | AGTACT | 2 cut(s) | 55, 1151 |