RLG00000014542

Wall-associated receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
54543265 .. 54552757
9493 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014542

Sequence Viewer

Length: 2361 bp
ATGGCCTTAGTAGATGTGAGGATGTTTGTTATGCAAGTCTCATTGGTAATAGTGGCAGCTTCAATAACCACCACCACCACCACCCAAGTAACAGCTGATCAAGCCAGCCTCTTACCGCCTCAAGCCAAGCGTAACTGCCCCGACCGCTGTGGTGACCTCACAATTCCATACCCATTTGGCATCGGTGACGGCTGTTACCGACAGTTGCCGGAACAAAATCATCAATTCAGCATCACTTGTGACCAGTCCACTAAACCCCCATCAGCGTACTGGAGTCACTGGACAAGTGCTAAAGTCCGGGTTACAAACTTTAATATTTCAGAGGATGAGTTACAAATCATGAGTTACATAGCGAAAGATTGTTACGACGCCCAGGGTAATCGAACATTCAGAACCACCCCTTCGCTCCGAGTTAATCCTCCTTTCACCATCTCCAGTCACAAAAACAAGTTCTTTGCCGTTGGCTGTGACACTAACGCAATTTTTCGAGGTTTTCGAGGGGAAAAAGAGTTGGCAACCGGGTGTATGTCTGTGTGCACCACCCTTGCCGTTGTCGATTGGGAGTCTTGCACTGGCGTCGGCTGTTGCCAAACTCAAGTCCCGCATGGACTGAAAAACAGTACCGTGAGATTGAGTAGCTATAACGGCCACAAGGAGATACGGAGCTTTAACCCTTGCAGTTACGCTTTTATTGTGCAAGATGGCCTCTTCACATTTCATAATACTAGTTTTAAACTACTGAACAACATCCAGGAGCTTCCCATGGTTCTTAATTGGGACATGGGAAACGTGCCATGCGAGGTAGCTGGAAAGAGAAGTGAGGATTATGCATGCAAGGCTAATAGCAAGTGTGCCAATAGGGGAAATTTCATCGGCGGCAATGGTTACTATTGCCAGTGCTTGCCTGGCTACGAAGGAAACCCATATCTCGGTTGCCAAGATATTGACGAGTGCTCGGGGGAAGCTAACCCCTGCGAGAATGGAACGTGCCTAAATTCACCTGCTGGCAATTACTCTTGTGAATGTCATAAAGGGTTCAGGAGTGATGGTCCATGGAAGTGCGTTCCCTCTCCCAAAGCTAACAACACTTCCCTGAAAATTTCATTGGGTATCAGCATAAGCTTCTTTGTATTGATGACTGGAATTTTTGGGATATATTGCCGATTCAAGAGACGACAATTCGAAAGACTTAAAGCAAAGTACTTCAATGCAAATGGCGGCCCAAAGTTGCTAGAAAAATTGTCCACTCAAAATGAATCTCTTGAGACAAAAGCCCAAATCTTTACTGCAGAAGCACTTAAGAAGGCAACAAACAATTACCATGAAAGTGAAAAGCTTGGTGAAGGAGGCTATGGAATAGTCTACAAAGGTATACTCAACAAAGGTAAACTCAAGGATGAAAGAGTGGTTGCAATAAAGAAGTCCAAAAATATTGCCCAGATCGAGAGTGACCAGTTTGTTAATGAGGTGGTTGTTCTCTCTCAAATCAATCAGAAAAATGTGGTGAGGCTTATAGGTTGTTGTTTGGAGACACAAATGCCTTTGTTAGTCTATGAGTTTGTTGGCAACGGCACTCTTTATGAGCACATTCATAGAATAAATGGGAGAGAACCACTTTCGTTGGAGTTTCGATTGAAGATAGCTGCAGAAACTGCAAGTGCAATCTCATACTTGCACCACTCGACATCGATCCCAATCATTCACCGAGATGTAAAAGCAACCAATATACTACTAGATGAGAAGTTCACCGCAAAAGTGTCGGACTTTGGAGCATCCCGTTTGGTTCCCGAAGATCCAAATCAACTTCTAACTTTCGTGCAAGGGACAATAGGGTACTTAGACCCTGAATATCTTCAATCAAACATACTCACAGATAAAAGTGACGTTTATAGCTTTGGAGTTGTCCTTGTAGTGCTACTCACAAGCAAAAAGGTGGTTTCATTTGATAGATCCGAGGAAGAGAGAAACCTTGCCAATGTCTTTGTTTCCGCGGCCGAAAAGGGTATGTTGAATCCAATTCTTGATGATGAAATAGTGAAGGATGGAAATTTGGAGATAATTGAAAAAGTTGCCAATCTCGCCAAAAATTGTTTAAGCTTAAAAGGAGACGACAGGCCTTCCATGAAAGATGTAGAGAGGGAACTGGATGGAATATTATTGCAAACTTTGGCCATAGAACCAGGGGTAAAGTCTCATTCCTCTTCCAAAGAGATAGACCACTCTCTTGAGTCGTCTTCAAGCGCTTTCGTTGTCAAGGTTAGTGGTGAAGATGAAGGTGATAACACCACCAATATTACCAGTTACGACGTCAGCATGGAAAATCAAGCCCAAATGTTGAAGGCTTTTGATGATGGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

787

Amino Acids

87.0

Weight (kDa)

6.0

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 46 - 113 5.3e-09 Wall-associated receptor kinase galacturonan-binding
Pkinase PF00069 440 - 711 1.4e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 443 - 715 6.5e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1009
AatII GACGTC 1 cut(s) 2310
Acc36I ACCTGC 1 cut(s) 1009
AccI GTMKAC 2 cut(s) 1362, 1372
AccII CGCG 1 cut(s) 1991
AciI CCGC 8 cut(s) 116, 145, 602, 876, 1218, 1749, 1989, 1991
AclWI GGATC 3 cut(s) 1684, 1787, 1944
AcoI YGGCCR 3 cut(s) 646, 1992, 2169
AcsI RAATTY 5 cut(s) 865, 994, 1098, 1143, 2047
AcyI GRCGYC 3 cut(s) 369, 576, 2307
AfaI GTAC 4 cut(s) 269, 622, 1202, 1835
AfeI AGCGCT 1 cut(s) 2242
AfiI CCNNNNNNNGG 1 cut(s) 929
AflII CTTAAG 1 cut(s) 1298
AgsI TTSAA 9 cut(s) 63, 1168, 1207, 1636, 1856, 2011, 2063, 2238, 2338
AhlI ACTAGT 1 cut(s) 725
AjnI CCWGG 4 cut(s) 372, 750, 904, 2179
AjuI GAANNNNNNNTTGG 2 cut(s) 1088, 1120
Alw21I GWGCWC 3 cut(s) 539, 956, 1587
Alw26I GTCTC 6 cut(s) 43, 1165, 1259, 1523, 2100, 2196
Alw44I GTGCAC 1 cut(s) 535
AlwI GGATC 3 cut(s) 1684, 1787, 1944
AlwNI CAGNNNCTG 1 cut(s) 1652
Ama87I CYCGRG 1 cut(s) 955
Aor51HI AGCGCT 1 cut(s) 2242
AoxI GGCC 7 cut(s) 3, 646, 703, 1219, 1992, 2114, 2169
ApaLI GTGCAC 1 cut(s) 535
ApeKI GCWGC 2 cut(s) 56, 1643
ApoI RAATTY 5 cut(s) 865, 994, 1098, 1143, 2047
Asp700I GAANNNNTTC 1 cut(s) 1851
AspLEI GCGC 1 cut(s) 2243
AspS9I GGNCC 2 cut(s) 1049, 1220
AsuC2I CCSGG 2 cut(s) 299, 520
AsuII TTCGAA 1 cut(s) 1182
AvaI CYCGRG 1 cut(s) 955
AvaII GGWCC 1 cut(s) 1049
BaeGI GKGCMC 1 cut(s) 539
BalI TGGCCA 1 cut(s) 2171
BbsI GAAGAC 1 cut(s) 2226
Bbv12I GWGCWC 3 cut(s) 539, 956, 1587
BbvI GCAGC 2 cut(s) 68, 1630
BccI CCATC 7 cut(s) 268, 437, 695, 1040, 2036, 2141, 2345
BceAI ACGGC 5 cut(s) 205, 443, 533, 661, 1585
BcgI CGANNNNNNTGC 4 cut(s) 559, 593, 1740, 1774
BciT130I CCWGG 4 cut(s) 374, 752, 906, 2181
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 2 cut(s) 299, 520
BcoDI GTCTC 6 cut(s) 43, 1165, 1259, 1523, 2100, 2196
BcuI ACTAGT 1 cut(s) 725
BfaI CTAG 3 cut(s) 726, 1232, 1733
BfmI CTRYAG 2 cut(s) 1287, 1644
BfoI RGCGCY 1 cut(s) 2244
BfrI CTTAAG 1 cut(s) 1298
BfuAI ACCTGC 1 cut(s) 1009
BisI GCNGC 5 cut(s) 57, 877, 1219, 1644, 1992
BlsI GCNGC 5 cut(s) 58, 878, 1220, 1645, 1993
BmcAI AGTACT 1 cut(s) 1202
Bme1390I CCNGG 6 cut(s) 299, 374, 520, 752, 906, 2181
Bme18I GGWCC 1 cut(s) 1049
BmeT110I CYCGRG 1 cut(s) 955
BmgT120I GGNCC 2 cut(s) 1049, 1220
BmiI GGNNCC 1 cut(s) 1785
BmrFI CCNGG 6 cut(s) 299, 374, 520, 752, 906, 2181
BmsI GCATC 3 cut(s) 189, 240, 1781
BpiI GAAGAC 1 cut(s) 2226
BpmI CTGGAG 2 cut(s) 292, 418
Bpu14I TTCGAA 1 cut(s) 1182
BpuEI CTTGAG 5 cut(s) 105, 579, 1283, 1376, 2246
BpuMI CCSGG 2 cut(s) 299, 520
Bsa29I ATCGAT 1 cut(s) 1688
BsaBI GATNNNNATC 2 cut(s) 1694, 1797
BsaHI GRCGYC 3 cut(s) 369, 576, 2307
BsaJI CCNNGG 7 cut(s) 372, 373, 762, 1052, 1953, 1989, 2180
BsaXI ACNNNNNCTCC 2 cut(s) 1033, 1063
Bsc4I CCNNNNNNNGG 1 cut(s) 929
Bse3DI GCAATG 1 cut(s) 886
Bse8I GATNNNNATC 2 cut(s) 1694, 1797
BseBI CCWGG 4 cut(s) 374, 752, 906, 2181
BseCI ATCGAT 1 cut(s) 1688
BseDI CCNNGG 7 cut(s) 372, 373, 762, 1052, 1953, 1989, 2180
BseGI GGATG 7 cut(s) 27, 331, 747, 1402, 1772, 2047, 2152
BseJI GATNNNNATC 2 cut(s) 1694, 1797
BseLI CCNNNNNNNGG 1 cut(s) 929
BseMI GCAATG 1 cut(s) 886
BseSI GKGCMC 1 cut(s) 539
BseX3I CGGCCG 1 cut(s) 1992
BseXI GCAGC 2 cut(s) 68, 1630
Bsh1236I CGCG 1 cut(s) 1991
Bsh1285I CGRYCG 2 cut(s) 145, 1995
BshFI GGCC 7 cut(s) 5, 648, 705, 1221, 1994, 2116, 2171
BshVI ATCGAT 1 cut(s) 1688
BsiEI CGRYCG 2 cut(s) 145, 1995
BsiHKAI GWGCWC 3 cut(s) 539, 956, 1587
BsiHKCI CYCGRG 1 cut(s) 955
BsiSI CCGG 3 cut(s) 209, 298, 519
BslFI GGGAC 3 cut(s) 584, 791, 1837
BslI CCNNNNNNNGG 1 cut(s) 929
BsmAI GTCTC 6 cut(s) 43, 1165, 1259, 1523, 2100, 2196
BsmBI CGTCTC 2 cut(s) 1165, 2100
BsmFI GGGAC 3 cut(s) 584, 791, 1837
BsnI GGCC 7 cut(s) 5, 648, 705, 1221, 1994, 2116, 2171
BsoBI CYCGRG 1 cut(s) 955
Bsp119I TTCGAA 1 cut(s) 1182
Bsp1286I GDGCHC 3 cut(s) 539, 956, 1587
Bsp143I GATC 5 cut(s) 97, 1440, 1689, 1792, 1949
Bsp19I CCATGG 2 cut(s) 762, 1052
BspACI CCGC 8 cut(s) 116, 145, 602, 876, 1218, 1749, 1989, 1991
BspANI GGCC 7 cut(s) 5, 648, 705, 1221, 1994, 2116, 2171
BspDI ATCGAT 1 cut(s) 1688
BspFNI CGCG 1 cut(s) 1991
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 1785
BspMAI CTGCAG 2 cut(s) 1291, 1648
BspMI ACCTGC 1 cut(s) 1009
BspPI GGATC 3 cut(s) 1684, 1787, 1944
BspT104I TTCGAA 1 cut(s) 1182
BspTI CTTAAG 1 cut(s) 1298
BsrDI GCAATG 1 cut(s) 886
BssECI CCNNGG 7 cut(s) 372, 373, 762, 1052, 1953, 1989, 2180
BssMI GATC 5 cut(s) 97, 1440, 1689, 1792, 1949
BssNAI GTATAC 1 cut(s) 1373
BssNI GRCGYC 3 cut(s) 369, 576, 2307
BssT1I CCWWGG 2 cut(s) 762, 1052
Bst1107I GTATAC 1 cut(s) 1373
Bst2UI CCWGG 4 cut(s) 374, 752, 906, 2181
Bst4CI ACNGT 3 cut(s) 204, 620, 625
Bst6I CTCTTC 3 cut(s) 713, 1953, 2206
BstACI GRCGYC 3 cut(s) 369, 576, 2307
BstAFI CTTAAG 1 cut(s) 1298
BstAPI GCANNNNNTGC 1 cut(s) 1652
BstBI TTCGAA 1 cut(s) 1182
BstC8I GCNNGC 4 cut(s) 106, 832, 902, 1006
BstDEI CTNAG 2 cut(s) 7, 1837
BstDSI CCRYGG 3 cut(s) 762, 1052, 1989
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 7 cut(s) 27, 331, 747, 1402, 1772, 2047, 2152
BstFNI CGCG 1 cut(s) 1991
BstH2I RGCGCY 1 cut(s) 2244
BstHHI GCGC 1 cut(s) 2243
BstKTI GATC 5 cut(s) 100, 1443, 1692, 1795, 1952
BstMAI GTCTC 6 cut(s) 43, 1165, 1259, 1523, 2100, 2196
BstMBI GATC 5 cut(s) 97, 1440, 1689, 1792, 1949
BstMCI CGRYCG 2 cut(s) 145, 1995
BstMWI GCNNNNNNNGC 7 cut(s) 101, 144, 645, 836, 906, 1652, 2078
BstNI CCWGG 4 cut(s) 374, 752, 906, 2181
BstNSI RCATGY 1 cut(s) 834
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 6 cut(s) 297, 372, 518, 750, 904, 2179
BstSFI CTRYAG 2 cut(s) 1287, 1644
BstSLI GKGCMC 1 cut(s) 539
BstUI CGCG 1 cut(s) 1991
BstV1I GCAGC 2 cut(s) 68, 1630
BstV2I GAAGAC 1 cut(s) 2226
BstX2I RGATCY 2 cut(s) 1792, 1949
BstYI RGATCY 2 cut(s) 1792, 1949
BstZ17I GTATAC 1 cut(s) 1373
BstZI CGGCCG 1 cut(s) 1992
Bsu15I ATCGAT 1 cut(s) 1688
BsuRI GGCC 7 cut(s) 5, 648, 705, 1221, 1994, 2116, 2171
BsuTUI ATCGAT 1 cut(s) 1688
BtgI CCRYGG 3 cut(s) 762, 1052, 1989
BtsCI GGATG 7 cut(s) 27, 331, 747, 1402, 1772, 2047, 2152
BtsIMutI CAGTG 3 cut(s) 277, 570, 902
BveI ACCTGC 1 cut(s) 1009
Cac8I GCNNGC 4 cut(s) 106, 832, 902, 1006
CaiI CAGNNNCTG 1 cut(s) 1652
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 2243
Cfr13I GGNCC 2 cut(s) 1049, 1220
Cfr42I CCGCGG 1 cut(s) 1992
ClaI ATCGAT 1 cut(s) 1688
CseI GACGC 2 cut(s) 377, 565
Csp6I GTAC 4 cut(s) 268, 621, 1201, 1834
CspCI CAANNNNNGTGG 4 cut(s) 1602, 1637, 2242, 2277
CviQI GTAC 4 cut(s) 268, 621, 1201, 1834
DdeI CTNAG 2 cut(s) 7, 1837
DpnI GATC 5 cut(s) 99, 1442, 1691, 1794, 1951
DpnII GATC 5 cut(s) 97, 1440, 1689, 1792, 1949
DraI TTTAAA 1 cut(s) 733
EaeI YGGCCR 3 cut(s) 646, 1992, 2169
EagI CGGCCG 1 cut(s) 1992
Eam1104I CTCTTC 3 cut(s) 713, 1953, 2206
EarI CTCTTC 3 cut(s) 713, 1953, 2206
EclXI CGGCCG 1 cut(s) 1992
Eco130I CCWWGG 2 cut(s) 762, 1052
Eco147I AGGCCT 1 cut(s) 2116
Eco47I GGWCC 1 cut(s) 1049
Eco47III AGCGCT 1 cut(s) 2242
Eco52I CGGCCG 1 cut(s) 1992
Eco88I CYCGRG 1 cut(s) 955
Eco91I GGTNACC 1 cut(s) 152
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 4 cut(s) 372, 750, 904, 2179
EcoT14I CCWWGG 2 cut(s) 762, 1052
EcoT22I ATGCAT 1 cut(s) 832
ErhI CCWWGG 2 cut(s) 762, 1052
Esp3I CGTCTC 2 cut(s) 1165, 2100
FaqI GGGAC 3 cut(s) 584, 791, 1837
FauI CCCGC 1 cut(s) 609
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 2 cut(s) 1362, 1372
Fnu4HI GCNGC 5 cut(s) 57, 877, 1219, 1644, 1992
FokI GGATG 7 cut(s) 34, 338, 734, 1409, 1759, 2054, 2159
Fsp4HI GCNGC 5 cut(s) 57, 877, 1219, 1644, 1992
FspBI CTAG 3 cut(s) 726, 1232, 1733
GlaI GCGC 1 cut(s) 2242
GluI GCNGC 5 cut(s) 57, 877, 1219, 1644, 1992
GsuI CTGGAG 2 cut(s) 292, 418
HaeII RGCGCY 1 cut(s) 2244
HaeIII GGCC 7 cut(s) 5, 648, 705, 1221, 1994, 2116, 2171
HapII CCGG 3 cut(s) 209, 298, 519
HgaI GACGC 2 cut(s) 377, 565
HhaI GCGC 1 cut(s) 2243
Hin1I GRCGYC 3 cut(s) 369, 576, 2307
Hin6I GCGC 1 cut(s) 2241
HinP1I GCGC 1 cut(s) 2241
HindIII AAGCTT 3 cut(s) 1120, 1334, 2095
HinfI GANTC 6 cut(s) 274, 563, 1164, 1256, 2011, 2228
HpaII CCGG 3 cut(s) 209, 298, 519
Hpy166II GTNNAC 7 cut(s) 249, 537, 1245, 1363, 1373, 1388, 1746
Hpy188I TCNGA 6 cut(s) 322, 392, 410, 1494, 1762, 1954
Hpy188III TCNNGA 8 cut(s) 340, 1039, 1168, 1262, 1444, 1787, 2021, 2225
Hpy8I GTNNAC 7 cut(s) 249, 537, 1245, 1363, 1373, 1388, 1746
Hpy99I CGWCG 3 cut(s) 371, 581, 2309
HpyAV CCTTC 8 cut(s) 411, 908, 1297, 1337, 2032, 2127, 2267, 2332
HpyCH4III ACNGT 3 cut(s) 204, 620, 625
HpyCH4IV ACGT 4 cut(s) 789, 986, 1884, 2307
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 144, 645, 836, 906, 1652, 2078
HpyF3I CTNAG 2 cut(s) 7, 1837
HpySE526I ACGT 4 cut(s) 789, 986, 1884, 2307
Hsp92I GRCGYC 3 cut(s) 369, 576, 2307
HspAI GCGC 1 cut(s) 2241
Ksp22I TGATCA 1 cut(s) 97
KspI CCGCGG 1 cut(s) 1992
Kzo9I GATC 5 cut(s) 97, 1440, 1689, 1792, 1949
LmnI GCTCC 4 cut(s) 411, 663, 754, 1769
Lsp1109I GCAGC 2 cut(s) 68, 1630
LweI GCATC 3 cut(s) 189, 240, 1781
MaeI CTAG 3 cut(s) 726, 1232, 1733
MaeII ACGT 4 cut(s) 789, 986, 1884, 2307
MalI GATC 5 cut(s) 99, 1442, 1691, 1794, 1951
MboI GATC 5 cut(s) 97, 1440, 1689, 1792, 1949
MboII GAAGA 8 cut(s) 700, 1648, 1802, 1844, 1970, 2193, 2226, 2279
MflI RGATCY 2 cut(s) 1792, 1949
MhlI GDGCHC 3 cut(s) 539, 956, 1587
MlsI TGGCCA 1 cut(s) 2171
MluNI TGGCCA 1 cut(s) 2171
MlyI GAGTC 3 cut(s) 283, 572, 2237
MmeI TCCRAC 2 cut(s) 1602, 1740
Mox20I TGGCCA 1 cut(s) 2171
Mph1103I ATGCAT 1 cut(s) 832
MroXI GAANNNNTTC 1 cut(s) 1851
MscI TGGCCA 1 cut(s) 2171
MslI CAYNNNNRTG 3 cut(s) 1057, 1326, 1707
Msp20I TGGCCA 1 cut(s) 2171
MspA1I CMGCKG 3 cut(s) 95, 147, 1991
MspCI CTTAAG 1 cut(s) 1298
MspI CCGG 3 cut(s) 209, 298, 519
MspR9I CCNGG 6 cut(s) 299, 374, 520, 752, 906, 2181
MvaI CCWGG 4 cut(s) 374, 752, 906, 2181
MvnI CGCG 1 cut(s) 1991
MwoI GCNNNNNNNGC 7 cut(s) 101, 144, 645, 836, 906, 1652, 2078
NciI CCSGG 2 cut(s) 299, 520
NcoI CCATGG 2 cut(s) 762, 1052
NdeII GATC 5 cut(s) 97, 1440, 1689, 1792, 1949
NlaIV GGNNCC 1 cut(s) 1785
NmuCI GTSAC 8 cut(s) 152, 185, 239, 275, 437, 467, 1448, 1880
NsiI ATGCAT 1 cut(s) 832
NspI RCATGY 1 cut(s) 834
NspV TTCGAA 1 cut(s) 1182
PaeI GCATGC 1 cut(s) 834
PagI TCATGA 1 cut(s) 339
PaqCI CACCTGC 1 cut(s) 1009
PasI CCCWGGG 1 cut(s) 373
PceI AGGCCT 1 cut(s) 2116
PcsI WCGNNNNNNNCGW 2 cut(s) 493, 795
PdmI GAANNNNTTC 1 cut(s) 1851
PfeI GAWTC 3 cut(s) 1164, 1256, 2011
PfoI TCCNGGA 1 cut(s) 750
PkrI GCNGC 5 cut(s) 58, 878, 1220, 1645, 1993
PleI GAGTC 3 cut(s) 282, 571, 2236
PpsI GAGTC 3 cut(s) 282, 571, 2236
Psp6I CCWGG 4 cut(s) 372, 750, 904, 2179
PspEI GGTNACC 1 cut(s) 152
PspGI CCWGG 4 cut(s) 372, 750, 904, 2179
PspN4I GGNNCC 1 cut(s) 1785
PspPI GGNCC 2 cut(s) 1049, 1220
PstI CTGCAG 2 cut(s) 1291, 1648
PstNI CAGNNNCTG 1 cut(s) 1652
PsuI RGATCY 2 cut(s) 1792, 1949
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 4 cut(s) 269, 622, 1202, 1835
RsaNI GTAC 4 cut(s) 268, 621, 1201, 1834
RseI CAYNNNNRTG 3 cut(s) 1057, 1326, 1707
SacII CCGCGG 1 cut(s) 1992
SatI GCNGC 5 cut(s) 57, 877, 1219, 1644, 1992
Sau3AI GATC 5 cut(s) 97, 1440, 1689, 1792, 1949
Sau96I GGNCC 2 cut(s) 1049, 1220
ScaI AGTACT 1 cut(s) 1202
SchI GAGTC 3 cut(s) 283, 572, 2237
ScrFI CCNGG 6 cut(s) 299, 374, 520, 752, 906, 2181
SduI GDGCHC 3 cut(s) 539, 956, 1587
SfaNI GCATC 3 cut(s) 189, 240, 1781
SfcI CTRYAG 2 cut(s) 1287, 1644
Sfr303I CCGCGG 1 cut(s) 1992
SfuI TTCGAA 1 cut(s) 1182
SgrBI CCGCGG 1 cut(s) 1992
SinI GGWCC 1 cut(s) 1049
SmiMI CAYNNNNRTG 3 cut(s) 1057, 1326, 1707
SmlI CTYRAG 6 cut(s) 120, 594, 1262, 1298, 1391, 2225
SmoI CTYRAG 6 cut(s) 120, 594, 1262, 1298, 1391, 2225
SpeI ACTAGT 1 cut(s) 725
SphI GCATGC 1 cut(s) 834
SseBI AGGCCT 1 cut(s) 2116
SsiI CCGC 8 cut(s) 116, 145, 602, 876, 1218, 1749, 1989, 1991
SspI AATATT 4 cut(s) 316, 1432, 2154, 2293
SspMI CTAG 3 cut(s) 726, 1232, 1733
StuI AGGCCT 1 cut(s) 2116
StyD4I CCNGG 6 cut(s) 297, 372, 518, 750, 904, 2179
StyI CCWWGG 2 cut(s) 762, 1052
TaaI ACNGT 3 cut(s) 204, 620, 625
TaiI ACGT 4 cut(s) 792, 989, 1887, 2310
TaqI TCGA 9 cut(s) 382, 487, 496, 555, 1182, 1443, 1630, 1682, 1688
TatI WGTACW 1 cut(s) 1200
TauI GCSGC 3 cut(s) 879, 1221, 1994
TfiI GAWTC 3 cut(s) 1164, 1256, 2011
TscAI CASTG 3 cut(s) 284, 577, 902
TseFI GTSAC 8 cut(s) 152, 185, 239, 275, 437, 467, 1448, 1880
TseI GCWGC 2 cut(s) 56, 1643
Tsp45I GTSAC 8 cut(s) 152, 185, 239, 275, 437, 467, 1448, 1880
TspGWI ACGGA 1 cut(s) 676
TspRI CASTG 3 cut(s) 284, 577, 902
Vha464I CTTAAG 1 cut(s) 1298
VneI GTGCAC 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 1049
XapI RAATTY 5 cut(s) 865, 994, 1098, 1143, 2047
XceI RCATGY 1 cut(s) 834
XcmI CCANNNNNNNNNTGG 2 cut(s) 267, 902
XmiI GTMKAC 2 cut(s) 1362, 1372
XmnI GAANNNNTTC 1 cut(s) 1851
XspI CTAG 3 cut(s) 726, 1232, 1733
ZraI GACGTC 1 cut(s) 2308
ZrmI AGTACT 1 cut(s) 1202
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.