Rmu_sc0027371.1_g000001

Wall-associated receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027371.1
OG0000066
Physical Location & Seq
Forward (+)
1 .. 445
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027371.1_g000001.1.cds

Sequence Viewer

Length: 400 bp
gcctgaggcagagagatgccttgcacacttttttgtttgttcggtggaagatggtcacttgaaccaaattctatatgatggcattattaatgaaggagatattgaccagagagtaatagaaaatgtggcccatcttgcaagaagatgtttgagggtaaaaggggaggaaaggcctaccatgagagaagtagccatggagctagaaggaatgattatgacaaagcatccacggggttctgcagatcattacttcccagaagagactacgcacttgctcggatcacctaatacttccaaggattatgttgtgaattttgatggtgatggtggtcctggtacaaccagtgggtgtgacagcatgcaaatcgaaatgttaatgtcatatgctgatgggcgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

132

Amino Acids

14.73

Weight (kDa)

4.82

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 2 cut(s) 67, 311
AfaI GTAC 1 cut(s) 338
AgsI TTSAA 1 cut(s) 62
AjnI CCWGG 1 cut(s) 332
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 287
AoxI GGCC 2 cut(s) 127, 171
ApoI RAATTY 2 cut(s) 67, 311
AseI ATTAAT 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 128, 330
AsuHPI GGTGA 2 cut(s) 274, 333
AvaII GGWCC 1 cut(s) 330
AxyI CCTNAGG 1 cut(s) 4
BccI CCATC 6 cut(s) 45, 72, 139, 312, 318, 384
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BciT130I CCWGG 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 334
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 2 cut(s) 128, 330
BmrFI CCNGG 1 cut(s) 334
BmsI GCATC 2 cut(s) 6, 233
BsaJI CCNNGG 3 cut(s) 193, 228, 295
Bse1I ACTGG 1 cut(s) 343
Bse21I CCTNAGG 1 cut(s) 4
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 3 cut(s) 193, 228, 295
BseGI GGATG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 343
BshFI GGCC 2 cut(s) 129, 173
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 2 cut(s) 129, 173
Bsp143I GATC 2 cut(s) 242, 279
Bsp19I CCATGG 1 cut(s) 193
BspANI GGCC 2 cut(s) 129, 173
BspMAI CTGCAG 1 cut(s) 242
BspPI GGATC 1 cut(s) 287
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 3 cut(s) 193, 228, 295
BssMI GATC 2 cut(s) 242, 279
BssT1I CCWWGG 2 cut(s) 193, 295
Bst2UI CCWGG 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 4
BstDSI CCRYGG 2 cut(s) 193, 228
BstF5I GGATG 1 cut(s) 224
BstKTI GATC 2 cut(s) 245, 282
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 2 cut(s) 242, 279
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 334
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 332
BstSFI CTRYAG 1 cut(s) 238
Bsu36I CCTNAGG 1 cut(s) 4
BsuRI GGCC 2 cut(s) 129, 173
BtgI CCRYGG 2 cut(s) 193, 228
BtsCI GGATG 1 cut(s) 224
BtsIMutI CAGTG 1 cut(s) 350
Cac8I GCNNGC 1 cut(s) 360
Cfr13I GGNCC 2 cut(s) 128, 330
Csp6I GTAC 1 cut(s) 337
CviAII CATG 3 cut(s) 179, 194, 359
CviJI RGCY 4 cut(s) 129, 173, 192, 200
CviKI_1 RGCY 4 cut(s) 129, 173, 192, 200
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 4
DpnI GATC 2 cut(s) 244, 281
DpnII GATC 2 cut(s) 242, 279
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco130I CCWWGG 2 cut(s) 193, 295
Eco147I AGGCCT 1 cut(s) 173
Eco47I GGWCC 1 cut(s) 330
Eco81I CCTNAGG 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 2 cut(s) 193, 295
ErhI CCWWGG 2 cut(s) 193, 295
FaeI CATG 3 cut(s) 182, 197, 362
FaiI YATR 9 cut(s) 74, 76, 180, 195, 216, 304, 360, 383, 385
FatI CATG 3 cut(s) 178, 193, 358
FauNDI CATATG 1 cut(s) 383
FokI GGATG 1 cut(s) 211
FspBI CTAG 1 cut(s) 201
HaeIII GGCC 2 cut(s) 129, 173
Hin1II CATG 3 cut(s) 182, 197, 362
HphI GGTGA 2 cut(s) 274, 333
Hpy188I TCNGA 1 cut(s) 279
HpyAV CCTTC 2 cut(s) 87, 198
HpyCH4V TGCA 4 cut(s) 24, 138, 240, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 4
Hsp92II CATG 3 cut(s) 182, 197, 362
Kzo9I GATC 2 cut(s) 242, 279
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 6 cut(s) 16, 120, 268, 319, 346, 356
LweI GCATC 2 cut(s) 6, 233
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 54, 351
MalI GATC 2 cut(s) 244, 281
MboI GATC 2 cut(s) 242, 279
MboII GAAGA 3 cut(s) 60, 154, 270
MluCI AATT 2 cut(s) 67, 311
MnlI CCTC 2 cut(s) 145, 158
MseI TTAA 2 cut(s) 88, 375
MspR9I CCNGG 1 cut(s) 334
MvaI CCWGG 1 cut(s) 334
MwoI GCNNNNNNNGC 1 cut(s) 135
NcoI CCATGG 1 cut(s) 193
NdeI CATATG 1 cut(s) 383
NdeII GATC 2 cut(s) 242, 279
NlaIII CATG 3 cut(s) 182, 197, 362
NmuCI GTSAC 2 cut(s) 54, 351
NspI RCATGY 1 cut(s) 362
PaeI GCATGC 1 cut(s) 362
PceI AGGCCT 1 cut(s) 173
PshBI ATTAAT 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 332
PspGI CCWGG 1 cut(s) 332
PspPI GGNCC 2 cut(s) 128, 330
PstI CTGCAG 1 cut(s) 242
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SaqAI TTAA 2 cut(s) 88, 375
Sau3AI GATC 2 cut(s) 242, 279
Sau96I GGNCC 2 cut(s) 128, 330
ScrFI CCNGG 1 cut(s) 334
SetI ASST 2 cut(s) 202, 287
SfaNI GCATC 2 cut(s) 6, 233
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 330
SphI GCATGC 1 cut(s) 362
Sse9I AATT 2 cut(s) 67, 311
SseBI AGGCCT 1 cut(s) 173
SspMI CTAG 1 cut(s) 201
StuI AGGCCT 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 2 cut(s) 193, 295
TaqI TCGA 1 cut(s) 367
TasI AATT 2 cut(s) 67, 311
Tru1I TTAA 2 cut(s) 88, 375
Tru9I TTAA 2 cut(s) 88, 375
TscAI CASTG 1 cut(s) 350
TseFI GTSAC 2 cut(s) 54, 351
Tsp45I GTSAC 2 cut(s) 54, 351
TspDTI ATGAA 1 cut(s) 106
TspRI CASTG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 330
VspI ATTAAT 1 cut(s) 88
XapI RAATTY 2 cut(s) 67, 311
XceI RCATGY 1 cut(s) 362
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.