FvH4_3g10286

specification of plant organ axis polarity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000066
Physical Location & Seq
Reverse (-)
6013429 .. 6016643
3215 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10286.t1

Sequence Viewer

Length: 2301 bp
ATGGCAGCCTTGCTGGGGATCTTGCTTATCATTCAGCTCTCATTCGTAATCATCATCGGAGTACTAATTGTGTCAACAACAGCAGCACCACCTCAAGCACTGCCTAACTGCCCAGACAAATGTGGTAATATCACAGTTCCTTATCCCTTTGGCATGGCCGAAGGTTGTTACCGATCAAATTCCTTCTTTGTGAATTGTAGCCTAGCCACCGATCCCCCAACAGCTTATTTGAGCAAAAATGGCACTATCATCCTTACCAACATATCCATCGCTGATGGTGAGGTGCAAATATTAAACACTATAGCTCGAGATTGCTATAGCGCCTCTGGTCTGAGAACCGTGAGGAACAGCCCTGTGCTACGGCTGAAATCTACTTACATCATCTCCGATACCAAAAACAAGTTCATTGCCGTTGGTTGTGACACTTACGCTATCTTCAAGGGATTCCGGGGCTCAGATGAGTCCGTAACTGGATGTATGTCAGTATGTAACAGCCTAGACAACGTTGATCAGAATTCTTGCTCCGGCATTGGATGTTGCCAAACAAACATTCCTAGCGGACTGCACAACCGTTCTGTCACACTGGATAGCTATACCAATCATTCAGGTATATGGGACTTTAATCCCTGCAGCTATGCGTTCATTGTTGAAGAGACACAGTTCAACTTCTCTGGGAACACAACTTTTCAACAACTGAACAGCACCACACGGCTTCCGATGGTTCTTAACTGGGCAATTGGGGATGATCCAGACCCTTGTGATGTAGCTCAAACGAGGGAGGATTTCGTATGCATGCAAAATAGCAAGTGTGTGAATCCCCCAAATAGAAATGGCTACATTTGCCAGTGCTTGGAAGGTTATGAAGGGAACCCATACCACCCAGATGGTTGCCAAGATATTGATGAGTGCACGGATTCAAACCTCTGCAACAATGGCAAGTGCATAAATTCGCCAGGAAATTACTCTTGTTCATGTTCAAAAGGATACAAGATCGACAACACGAATGACAAGAGTTGCATCAAAGAGCATACCAAAAATAAATCAAAGATGACAATCCTGCTTATTGTTTCATTGAGTGTAAGTATAGGCTTGTTGGTTATATTTGTGGGAATTTCATGGATATGTTGCGGAATAAAGAGAAGACAATACACTAAACTCAAAGAAAGGTATTTCAAAGAGAATGGTGGCTTATTGTTACTACAACAACTCGCTAGTCATGGAGGCACTGTGGAGACAACAAAAATCTTTTCCACAGAAGAACTTGAGAAGGCAACAAACAATTACCACGAGAGTAGAGTCCTCGGAGAAGGAGGCTATGGAACAGTTTACAAAGGAATTCTACCAGATGACAAAGTGGTGGCGATAAAGAAGTCGAAAGGTGGTGCCCCGACCCAAAGTGATCAGTTTGTTAACGAGGTGATTGTTCTATCCCAAATAAACCACAGAAATGTGGTGAAGCTACTTGGTTGTTGTTTAGAGACAGTAGTGCCTTTACTAGTATATGAGTTCATCACCAATGGTACTCTTTACGAGCACATTCATAAAAAAAGATCATCACTGTCATTTGAACTACGAATGAGGATAGCAGTTGAAACGGCAGAAGCATTAGCATACTTGCACTCCTCAACTTCAAATCCAATCATACATAGAGATGTGAAAGCAGAAAATATTCTGCTAGATGATAGTTATACGGCGAAAGTGTCAGACTTCGGAGCTTCAAGATTGGTTCCATCAGGTCAAACTGAAATACAAACTCTAGTGCTTGGGACCTTCGGTTACCTAGACCCAGAATATCTGCAATCTAACCAACTAACAGAAAAAAGTGACGTCTACAGCTTTGGTGTTGTCCTAGTGGAGCTACTAACAAGCATAGTGGCACTTTCCAAGGGCAAATGCTTAACAAGCATCTTTCTTTCTTCCATGGGTGAAGGTCGCTTGAATCAAATTCTTGATGATGACATTGTGAATGAGGGAAACATTGAGACAATAAAGAGAGTGGCTATTCTTGCAGAAAGATGCTTGAGGGTAAAAGGGGAGGAAAGGCCTACCATGAAAGAAGTAGCAATGGAGCTAGAGAGAATGAGGATTACATCAAAGCATCCATGGGGAACTAAAGTTGATTTCTGTCCCGAAGAAAATGAGTACCTGCTTGGGTCACTTGATTCAGATGCTTATGTTTTGGATGTTACAGGAGGTAATGGTAGTTCTAGTGGTTTTACTACCGGTACAACCTCAGGATATGACAGTATGCAAATACAAATGTTAATGCCATATGGTTATGGTTCCGGTGATGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase_Tyr

Protein Analysis

767

Amino Acids

83.96

Weight (kDa)

5.43

Isoelectric Point (pI)

30.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 37 - 97 2.2e-08 Wall-associated receptor kinase galacturonan-binding
EGF_CA PF07645 299 - 339 9.5e-07 Calcium-binding EGF domain
Pkinase PF00069 428 - 687 1e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 431 - 691 2e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1830
Acc36I ACCTGC 1 cut(s) 2154
AccB1I GGYRCC 1 cut(s) 1382
AccB7I CCANNNNNTGG 1 cut(s) 850
AccI GTMKAC 1 cut(s) 1830
AciI CCGC 2 cut(s) 558, 1128
AclI AACGTT 1 cut(s) 504
AclWI GGATC 3 cut(s) 26, 206, 740
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 6 cut(s) 178, 514, 946, 1110, 1335, 1944
AcyI GRCGYC 1 cut(s) 1827
AfaI GTAC 4 cut(s) 63, 1522, 2144, 2227
AfiI CCNNNNNNNGG 2 cut(s) 15, 850
AgeI ACCGGT 1 cut(s) 2222
AhlI ACTAGT 1 cut(s) 1495
AjnI CCWGG 1 cut(s) 952
AjuI GAANNNNNNNTTGG 4 cut(s) 386, 418, 534, 566
Alw21I GWGCWC 2 cut(s) 911, 1536
Alw26I GTCTC 4 cut(s) 647, 1226, 1472, 1976
Alw44I GTGCAC 1 cut(s) 907
AlwI GGATC 3 cut(s) 26, 206, 740
Ama87I CYCGRG 1 cut(s) 306
AoxI GGCC 2 cut(s) 156, 2042
ApaLI GTGCAC 1 cut(s) 907
ApeKI GCWGC 3 cut(s) 5, 83, 630
ApoI RAATTY 6 cut(s) 178, 514, 946, 1110, 1335, 1944
AsiGI ACCGGT 1 cut(s) 2222
Asp700I GAANNNNTTC 1 cut(s) 1668
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 1767
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 6 cut(s) 290, 1429, 1465, 1504, 1937, 2300
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 1 cut(s) 1767
AxyI CCTNAGG 1 cut(s) 2233
BaeGI GKGCMC 2 cut(s) 911, 1387
BanI GGYRCC 1 cut(s) 1382
BanII GRGCYC 1 cut(s) 455
BauI CACGAG 1 cut(s) 1286
BbsI GAAGAC 1 cut(s) 1147
Bbv12I GWGCWC 2 cut(s) 911, 1536
BbvI GCAGC 3 cut(s) 17, 95, 642
BccI CCATC 6 cut(s) 269, 275, 712, 878, 1738, 2285
BceAI ACGGC 5 cut(s) 377, 395, 725, 1611, 1707
BciT130I CCWGG 1 cut(s) 954
BciVI GTATCC 1 cut(s) 977
BclI TGATCA 2 cut(s) 508, 1399
BcnI CCSGG 1 cut(s) 449
BcoDI GTCTC 4 cut(s) 647, 1226, 1472, 1976
BcuI ACTAGT 1 cut(s) 1495
BfmI CTRYAG 4 cut(s) 300, 316, 628, 1831
BfoI RGCGCY 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 2154
BfuI GTATCC 1 cut(s) 977
BisI GCNGC 3 cut(s) 6, 84, 631
BlsI GCNGC 3 cut(s) 7, 85, 632
BmcAI AGTACT 1 cut(s) 63
Bme1390I CCNGG 2 cut(s) 449, 954
Bme18I GGWCC 1 cut(s) 1767
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 1767
BmiI GGNNCC 5 cut(s) 869, 1384, 1728, 1768, 2284
BmrFI CCNGG 2 cut(s) 449, 954
BmrI ACTGGG 1 cut(s) 739
BmsI GCATC 5 cut(s) 1026, 1914, 2006, 2107, 2158
BmuI ACTGGG 1 cut(s) 739
BpiI GAAGAC 1 cut(s) 1147
BpuEI CTTGAG 3 cut(s) 78, 1283, 2041
BpuMI CCSGG 1 cut(s) 449
BsaBI GATNNNNATC 1 cut(s) 1052
BsaHI GRCGYC 1 cut(s) 1827
BsaJI CCNNGG 5 cut(s) 448, 1300, 1884, 1920, 2102
BsaWI WCCGGW 2 cut(s) 2222, 2285
BsaXI ACNNNNNCTCC 6 cut(s) 368, 398, 1212, 1242, 1604, 1634
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 850
Bse118I RCCGGY 1 cut(s) 2222
Bse1I ACTGG 4 cut(s) 475, 588, 734, 844
Bse21I CCTNAGG 1 cut(s) 2233
Bse3DI GCAATG 2 cut(s) 405, 2070
Bse8I GATNNNNATC 1 cut(s) 1052
BseBI CCWGG 1 cut(s) 954
BseDI CCNNGG 5 cut(s) 448, 1300, 1884, 1920, 2102
BseGI GGATG 6 cut(s) 249, 479, 539, 748, 2098, 2188
BseJI GATNNNNATC 1 cut(s) 1052
BseLI CCNNNNNNNGG 2 cut(s) 15, 850
BseMI GCAATG 2 cut(s) 405, 2070
BseMII CTCAG 3 cut(s) 323, 468, 2247
BseNI ACTGG 4 cut(s) 475, 588, 734, 844
BseRI GAGGAG 1 cut(s) 1612
BseSI GKGCMC 2 cut(s) 911, 1387
BseXI GCAGC 3 cut(s) 17, 95, 642
BseYI CCCAGC 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 548
BshFI GGCC 2 cut(s) 158, 2044
BshNI GGYRCC 1 cut(s) 1382
BshTI ACCGGT 1 cut(s) 2222
BsiHKAI GWGCWC 2 cut(s) 911, 1536
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 4 cut(s) 448, 525, 2223, 2286
BslFI GGGAC 3 cut(s) 629, 1780, 2112
BslI CCNNNNNNNGG 2 cut(s) 15, 850
BsmAI GTCTC 4 cut(s) 647, 1226, 1472, 1976
BsmFI GGGAC 3 cut(s) 629, 1780, 2112
BsnI GGCC 2 cut(s) 158, 2044
BsoBI CYCGRG 1 cut(s) 306
Bsp1286I GDGCHC 4 cut(s) 455, 911, 1387, 1536
Bsp143I GATC 8 cut(s) 18, 173, 211, 508, 745, 990, 1399, 1550
Bsp19I CCATGG 2 cut(s) 1920, 2102
BspACI CCGC 2 cut(s) 558, 1128
BspANI GGCC 2 cut(s) 158, 2044
BspCNI CTCAG 3 cut(s) 324, 467, 2246
BspLI GGNNCC 5 cut(s) 869, 1384, 1728, 1768, 2284
BspMAI CTGCAG 1 cut(s) 632
BspMI ACCTGC 1 cut(s) 2154
BspPI GGATC 3 cut(s) 26, 206, 740
BspT107I GGYRCC 1 cut(s) 1382
BsrDI GCAATG 2 cut(s) 405, 2070
BsrFI RCCGGY 1 cut(s) 2222
BsrI ACTGG 4 cut(s) 475, 588, 734, 844
BssAI RCCGGY 1 cut(s) 2222
BssECI CCNNGG 5 cut(s) 448, 1300, 1884, 1920, 2102
BssMI GATC 8 cut(s) 18, 173, 211, 508, 745, 990, 1399, 1550
BssNI GRCGYC 1 cut(s) 1827
BssSI CACGAG 1 cut(s) 1286
BssT1I CCWWGG 3 cut(s) 1884, 1920, 2102
Bst2BI CACGAG 1 cut(s) 1286
Bst2UI CCWGG 1 cut(s) 954
Bst4CI ACNGT 9 cut(s) 136, 340, 572, 660, 1228, 1324, 1483, 1560, 2246
Bst6I CTCTTC 1 cut(s) 645
BstACI GRCGYC 1 cut(s) 1827
BstC8I GCNNGC 1 cut(s) 794
BstDEI CTNAG 3 cut(s) 332, 454, 2233
BstDSI CCRYGG 2 cut(s) 1920, 2102
BstEII GGTNACC 1 cut(s) 1775
BstF5I GGATG 6 cut(s) 249, 479, 539, 748, 2098, 2188
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 8 cut(s) 21, 176, 214, 511, 748, 993, 1402, 1553
BstMAI GTCTC 4 cut(s) 647, 1226, 1472, 1976
BstMBI GATC 8 cut(s) 18, 173, 211, 508, 745, 990, 1399, 1550
BstMWI GCNNNNNNNGC 5 cut(s) 240, 840, 933, 1902, 2006
BstNI CCWGG 1 cut(s) 954
BstNSI RCATGY 1 cut(s) 796
BstPI GGTNACC 1 cut(s) 1775
BstSCI CCNGG 2 cut(s) 447, 952
BstSFI CTRYAG 4 cut(s) 300, 316, 628, 1831
BstSLI GKGCMC 2 cut(s) 911, 1387
BstV1I GCAGC 3 cut(s) 17, 95, 642
BstV2I GAAGAC 1 cut(s) 1147
BstX2I RGATCY 1 cut(s) 18
BstXI CCANNNNNNTGG 1 cut(s) 884
BstYI RGATCY 1 cut(s) 18
Bsu36I CCTNAGG 1 cut(s) 2233
BsuI GTATCC 1 cut(s) 977
BsuRI GGCC 2 cut(s) 158, 2044
BtgI CCRYGG 2 cut(s) 1920, 2102
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 6 cut(s) 249, 479, 539, 748, 2098, 2188
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 5 cut(s) 98, 581, 851, 1224, 1556
BveI ACCTGC 1 cut(s) 2154
Cac8I GCNNGC 1 cut(s) 794
CfoI GCGC 1 cut(s) 323
Cfr10I RCCGGY 1 cut(s) 2222
Cfr13I GGNCC 1 cut(s) 1767
Csp6I GTAC 4 cut(s) 62, 1521, 2143, 2226
CspAI ACCGGT 1 cut(s) 2222
CspCI CAANNNNNGTGG 2 cut(s) 1854, 1889
CviAII CATG 8 cut(s) 154, 793, 972, 1116, 1217, 1921, 2050, 2103
CviQI GTAC 4 cut(s) 62, 1521, 2143, 2226
DdeI CTNAG 3 cut(s) 332, 454, 2233
DpnI GATC 8 cut(s) 20, 175, 213, 510, 747, 992, 1401, 1552
DpnII GATC 8 cut(s) 18, 173, 211, 508, 745, 990, 1399, 1550
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Eco130I CCWWGG 3 cut(s) 1884, 1920, 2102
Eco147I AGGCCT 1 cut(s) 2044
Eco24I GRGCYC 1 cut(s) 455
Eco47I GGWCC 1 cut(s) 1767
Eco81I CCTNAGG 1 cut(s) 2233
Eco88I CYCGRG 1 cut(s) 306
Eco91I GGTNACC 1 cut(s) 1775
EcoO109I RGGNCCY 1 cut(s) 1767
EcoO65I GGTNACC 1 cut(s) 1775
EcoRI GAATTC 2 cut(s) 514, 1335
EcoRII CCWGG 1 cut(s) 952
EcoT14I CCWWGG 3 cut(s) 1884, 1920, 2102
EcoT22I ATGCAT 1 cut(s) 794
EcoT38I GRGCYC 1 cut(s) 455
ErhI CCWWGG 3 cut(s) 1884, 1920, 2102
FaeI CATG 8 cut(s) 157, 796, 975, 1119, 1220, 1924, 2053, 2106
FaqI GGGAC 3 cut(s) 629, 1780, 2112
FatI CATG 8 cut(s) 153, 792, 971, 1115, 1216, 1920, 2049, 2102
FauNDI CATATG 1 cut(s) 2272
FbaI TGATCA 2 cut(s) 508, 1399
FblI GTMKAC 1 cut(s) 1830
Fnu4HI GCNGC 3 cut(s) 6, 84, 631
FokI GGATG 6 cut(s) 236, 486, 546, 755, 2085, 2195
FriOI GRGCYC 1 cut(s) 455
Fsp4HI GCNGC 3 cut(s) 6, 84, 631
GlaI GCGC 1 cut(s) 322
GluI GCNGC 3 cut(s) 6, 84, 631
GsaI CCCAGC 1 cut(s) 17
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 2 cut(s) 158, 2044
HapII CCGG 4 cut(s) 448, 525, 2223, 2286
HhaI GCGC 1 cut(s) 323
Hin1I GRCGYC 1 cut(s) 1827
Hin1II CATG 8 cut(s) 157, 796, 975, 1119, 1220, 1924, 2053, 2106
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HincII GTYRAC 2 cut(s) 75, 1411
HindII GTYRAC 2 cut(s) 75, 1411
HinfI GANTC 7 cut(s) 444, 461, 814, 914, 1296, 1939, 2162
HpaI GTTAAC 1 cut(s) 1411
HpaII CCGG 4 cut(s) 448, 525, 2223, 2286
HphI GGTGA 6 cut(s) 290, 1429, 1465, 1504, 1937, 2300
Hpy166II GTNNAC 5 cut(s) 75, 909, 1327, 1411, 1831
Hpy188III TCNNGA 6 cut(s) 308, 749, 1719, 1949, 2129, 2235
Hpy8I GTNNAC 5 cut(s) 75, 909, 1327, 1411, 1831
HpyAV CCTTC 8 cut(s) 155, 193, 848, 857, 1261, 1301, 1780, 1922
HpyCH4III ACNGT 9 cut(s) 136, 340, 572, 660, 1228, 1324, 1483, 1560, 2246
HpyCH4IV ACGT 2 cut(s) 504, 1827
HpyF10VI GCNNNNNNNGC 5 cut(s) 240, 840, 933, 1902, 2006
HpyF3I CTNAG 3 cut(s) 332, 454, 2233
HpySE526I ACGT 2 cut(s) 504, 1827
Hsp92I GRCGYC 1 cut(s) 1827
Hsp92II CATG 8 cut(s) 157, 796, 975, 1119, 1220, 1924, 2053, 2106
HspAI GCGC 1 cut(s) 321
Ksp22I TGATCA 2 cut(s) 508, 1399
KspAI GTTAAC 1 cut(s) 1411
Kzo9I GATC 8 cut(s) 18, 173, 211, 508, 745, 990, 1399, 1550
LmnI GCTCC 4 cut(s) 527, 1712, 1855, 2068
Lsp1109I GCAGC 3 cut(s) 17, 95, 642
LweI GCATC 5 cut(s) 1026, 1914, 2006, 2107, 2158
MaeII ACGT 2 cut(s) 504, 1827
MalI GATC 8 cut(s) 20, 175, 213, 510, 747, 992, 1401, 1552
MboI GATC 8 cut(s) 18, 173, 211, 508, 745, 990, 1399, 1550
MboII GAAGA 6 cut(s) 427, 662, 1152, 1268, 1908, 2144
MfeI CAATTG 1 cut(s) 735
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 4 cut(s) 455, 911, 1387, 1536
MlyI GAGTC 2 cut(s) 470, 1305
Mph1103I ATGCAT 1 cut(s) 794
MroXI GAANNNNTTC 1 cut(s) 1668
MseI TTAA 6 cut(s) 293, 621, 726, 1410, 1898, 2264
MslI CAYNNNNRTG 4 cut(s) 882, 1120, 1446, 1650
MspI CCGG 4 cut(s) 448, 525, 2223, 2286
MspR9I CCNGG 2 cut(s) 449, 954
MunI CAATTG 1 cut(s) 735
MvaI CCWGG 1 cut(s) 954
MwoI GCNNNNNNNGC 5 cut(s) 240, 840, 933, 1902, 2006
NciI CCSGG 1 cut(s) 449
NcoI CCATGG 2 cut(s) 1920, 2102
NdeI CATATG 1 cut(s) 2272
NdeII GATC 8 cut(s) 18, 173, 211, 508, 745, 990, 1399, 1550
NlaIII CATG 8 cut(s) 157, 796, 975, 1119, 1220, 1924, 2053, 2106
NlaIV GGNNCC 5 cut(s) 869, 1384, 1728, 1768, 2284
NmuCI GTSAC 4 cut(s) 419, 577, 1823, 2154
NsiI ATGCAT 1 cut(s) 794
NspI RCATGY 1 cut(s) 796
PaeI GCATGC 1 cut(s) 796
PaeR7I CTCGAG 1 cut(s) 306
PceI AGGCCT 1 cut(s) 2044
PdmI GAANNNNTTC 1 cut(s) 1668
PfeI GAWTC 5 cut(s) 444, 814, 914, 1939, 2162
PflMI CCANNNNNTGG 1 cut(s) 850
PinAI ACCGGT 1 cut(s) 2222
PkrI GCNGC 3 cut(s) 7, 85, 632
PleI GAGTC 2 cut(s) 469, 1304
PpsI GAGTC 2 cut(s) 469, 1304
PpuMI RGGWCCY 1 cut(s) 1767
Psp1406I AACGTT 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 1767
Psp6I CCWGG 1 cut(s) 952
PspEI GGTNACC 1 cut(s) 1775
PspFI CCCAGC 1 cut(s) 13
PspGI CCWGG 1 cut(s) 952
PspN4I GGNNCC 5 cut(s) 869, 1384, 1728, 1768, 2284
PspPI GGNCC 1 cut(s) 1767
PspPPI RGGWCCY 1 cut(s) 1767
PsrI GAACNNNNNNTAC 2 cut(s) 2188, 2220
PstI CTGCAG 1 cut(s) 632
PsuI RGATCY 1 cut(s) 18
RsaI GTAC 4 cut(s) 63, 1522, 2144, 2227
RsaNI GTAC 4 cut(s) 62, 1521, 2143, 2226
RseI CAYNNNNRTG 4 cut(s) 882, 1120, 1446, 1650
SaqAI TTAA 6 cut(s) 293, 621, 726, 1410, 1898, 2264
SatI GCNGC 3 cut(s) 6, 84, 631
Sau3AI GATC 8 cut(s) 18, 173, 211, 508, 745, 990, 1399, 1550
Sau96I GGNCC 1 cut(s) 1767
ScaI AGTACT 1 cut(s) 63
SchI GAGTC 2 cut(s) 470, 1305
ScrFI CCNGG 2 cut(s) 449, 954
SduI GDGCHC 4 cut(s) 455, 911, 1387, 1536
SfaNI GCATC 5 cut(s) 1026, 1914, 2006, 2107, 2158
SfcI CTRYAG 4 cut(s) 300, 316, 628, 1831
Sfr274I CTCGAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 1767
SlaI CTCGAG 1 cut(s) 306
SmiMI CAYNNNNRTG 4 cut(s) 882, 1120, 1446, 1650
SmlI CTYRAG 4 cut(s) 93, 306, 1262, 2020
SmoI CTYRAG 4 cut(s) 93, 306, 1262, 2020
SpeI ACTAGT 1 cut(s) 1495
SphI GCATGC 1 cut(s) 796
SseBI AGGCCT 1 cut(s) 2044
SsiI CCGC 2 cut(s) 558, 1128
SspI AATATT 2 cut(s) 291, 1669
StuI AGGCCT 1 cut(s) 2044
StyD4I CCNGG 2 cut(s) 447, 952
StyI CCWWGG 3 cut(s) 1884, 1920, 2102
TaaI ACNGT 9 cut(s) 136, 340, 572, 660, 1228, 1324, 1483, 1560, 2246
TaiI ACGT 2 cut(s) 507, 1830
TaqI TCGA 3 cut(s) 307, 993, 1373
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 5 cut(s) 444, 814, 914, 1939, 2162
Tru1I TTAA 6 cut(s) 293, 621, 726, 1410, 1898, 2264
Tru9I TTAA 6 cut(s) 293, 621, 726, 1410, 1898, 2264
TscAI CASTG 5 cut(s) 105, 588, 851, 1231, 1563
TseFI GTSAC 4 cut(s) 419, 577, 1823, 2154
TseI GCWGC 3 cut(s) 5, 83, 630
Tsp45I GTSAC 4 cut(s) 419, 577, 1823, 2154
TspDTI ATGAA 9 cut(s) 394, 631, 876, 960, 1059, 1104, 1498, 1529, 2066
TspGWI ACGGA 2 cut(s) 454, 926
TspRI CASTG 5 cut(s) 105, 588, 851, 1231, 1563
Van91I CCANNNNNTGG 1 cut(s) 850
VneI GTGCAC 1 cut(s) 907
VpaK11BI GGWCC 1 cut(s) 1767
XapI RAATTY 6 cut(s) 178, 514, 946, 1110, 1335, 1944
XceI RCATGY 1 cut(s) 796
XhoI CTCGAG 1 cut(s) 306
XmiI GTMKAC 1 cut(s) 1830
XmnI GAANNNNTTC 1 cut(s) 1668
ZraI GACGTC 1 cut(s) 1828
ZrmI AGTACT 1 cut(s) 63
Zsp2I ATGCAT 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.