Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000066

Physical Location & Seq

Genomic Coordinates Forward (+)

87459082 .. 87464106

Gene Structure 5025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54219

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGAGTATGAGAATAAAACTAGTACTTGTTGTGGTGGTTATAATATTGTTGGAGCATTATAATCATGGAGAAAAAGCAGCAGCAGACACCAATCCAAATCAACTGGAATTAGTCAAGCCAGGCTGCTCAGCCACCTGTGGATCTCTTGTCGTTCCATATCCTTTTGGTACTACCCCGGGTTGTTACTTTAACGACGACTTTTTCATATCTTGTAATAATACAATTACAGGCGGCGGCGGCGGCTATGAAGGAGGTCCAAAAGCTTTTTTCAGAGGGAGAAGTGATTTCGTTATCCTCAACATATCGTTGGAGCGTCAAGAAATGAGAGTATCACGTTCCATTAGCAAATCTTGCCTTGAAGTTGACAAGACTGGCAATGTGACTTCATATTCTAACGAAGACAACAACCCAGGTGTAATTGCCCCCAAAGCCTTTCGTATCTCAAGTAGGCGCAACAAGTTCACCACCGTCGGTTGCAACTTATTCGGGCTTATTCAGACTGTGGATCAAACTATTAGCAGCAGCCCAGGCTCAAAGAAATACTCATCGGAGACATCGGCGCTGCGTGGATATATTGATGCTTGTGTTTCAACGTGTACCCTAAGAATCGAAAACGTGAAAAATGGAACTTGTCATCCGCATGGTGGCTGTTGCCAAACACCTATTGCAATCGGCGATATAAATCATTATACCACAAGTTTAGACACCATATCAGAAGATTTCCGATCAGTAAAATTATGTGGTTATGCTTTTGTCACAGAAGAAGAGGAGTTCAAGTTTTCCTCTTTAGATCTAATCAAAAGCCTAGATAACAGAAAAGCGGCCCCTTTGGTTCTCGATTGGGCTGTTCGGAATCACCTCAATTGTGCAGAAGCTCGGAGTCGTAAGGATTATGCATGCAAGGCAAAGTACAGCGACTGTCTCAATTCAACAAATGGACCTGGCTATATTTGCAAATGCCGCAAAGGTTACCAAGGCAATCCTTACCTCCTCCATGGATGCCAAGATATCAACGAGTGTGCGAGCGAGAAGTTAAATCCTTGCTCAAGCTCGGCCACATGCATCAACAACCCTGGAGGTGTCACCTGCACTTGCTCGGAAGGATACATAGGAGACGGAAAGGAAGCCGGAACTGGTTGCACCCATCAATTCAGTCGGCAACTAAAACTTCTTGTTATTGCATTTGGTATTTGCATGGGCATTTTGGTGCTAGTGACAGTAGGTTTTTGGATTTATTTAGTTGAAAAGAGGAGAAGACTCATCAAACTCAAACGCATGTTCTTTGAACAAAACGGTGGAATTTTGTTACAACAACACCTCAACTTGTCCCGTCATAAACCATCCATTGAGATAATGAAAATATTTAGTTCAGACGAGCTCATAAAGGCTACCAACAATTATGACAAGAGTAACATTCTTGGCCAAGGAGGCAATGGAACAGTTTACAAGGGAGTCCTACGAGGCAACAAAATTGTAGCCATTAAAAGGTCCAAGGCTTGTGACCGAAGCCAAATTGGAGAATTCATCAACGAGGGAATTGTGCTTTCCCAAGTCAATCACCGCAATGTGGTTAAACTATTGGGTTGTTGTTTGGAGACAGAAGTTCCGGTGCTTGTTTATGAATTCATCACAAATGGAACTCTTGCAAGCCACCTTCATCCTAATCAAAGTCAGCCGTTGTCAATTACATTGTCATGGCAAATGCGTCTCAAAATCGCAGCTGAAATTGCTGGAGCGCTTGCATACTTGATTATACACATTTATATGCGTATAATTATATCTAAAATACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

597

Amino Acids

65.64

Weight (kDa)

8.79

Isoelectric Point (pI)

42.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	42 - 112	1e-07	Wall-associated receptor kinase galacturonan-binding
EGF_CA	PF07645	336 - 375	4e-07	Calcium-binding EGF domain
EGF_3	PF12947	344 - 374	4.3e-07	EGF domain
EGF	PF00008	346 - 372	1.6e-06	EGF-like domain
Pkinase	PF00069	467 - 583	1.9e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	471 - 583	9.7e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca	FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica	MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica	Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis	pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis	RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata	RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora	Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa	Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha	Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana	Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	41, 60
AarI	CACCTGC	1 cut(s)	1094
Acc36I	ACCTGC	1 cut(s)	1094
AciI	CCGC	8 cut(s)	231, 234, 237, 240, 638, 821, 961, 1561
AclWI	GGATC	2 cut(s)	148, 513
AcoI	YGGCCR	2 cut(s)	1053, 1420
AcsI	RAATTY	3 cut(s)	1299, 1520, 1622
AfaI	GTAC	4 cut(s)	24, 169, 598, 911
AfeI	AGCGCT	1 cut(s)	1737
AfiI	CCNNNNNNNGG	3 cut(s)	644, 1485, 1567
AflIII	ACRYGT	1 cut(s)	593
AgsI	TTSAA	6 cut(s)	359, 591, 775, 930, 1244, 1286
AhlI	ACTAGT	1 cut(s)	19
AjnI	CCWGG	5 cut(s)	118, 409, 526, 940, 1072
AloI	GAACNNNNNNTCC	2 cut(s)	619, 651
AluBI	AGCT	5 cut(s)	263, 875, 1050, 1378, 1721
AluI	AGCT	5 cut(s)	263, 875, 1050, 1378, 1721
Alw21I	GWGCWC	1 cut(s)	1380
Alw26I	GTCTC	5 cut(s)	545, 926, 1107, 1589, 1712
AlwI	GGATC	2 cut(s)	148, 513
AlwNI	CAGNNNCTG	1 cut(s)	918
Ama87I	CYCGRG	1 cut(s)	175
Aor51HI	AGCGCT	1 cut(s)	1737
AoxI	GGCC	3 cut(s)	822, 1053, 1420
ApeKI	GCWGC	7 cut(s)	77, 80, 123, 519, 522, 562, 1718
ApoI	RAATTY	3 cut(s)	1299, 1520, 1622
AspLEI	GCGC	3 cut(s)	453, 562, 1738
AspS9I	GGNCC	4 cut(s)	254, 823, 938, 1488
AsuC2I	CCSGG	2 cut(s)	176, 177
AsuHPI	GGTGA	4 cut(s)	454, 848, 1075, 1550
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	3 cut(s)	254, 938, 1488
BalI	TGGCCA	1 cut(s)	1422
BanII	GRGCYC	1 cut(s)	1380
BbsI	GAAGAC	2 cut(s)	405, 1261
Bbv12I	GWGCWC	1 cut(s)	1380
BbvI	GCAGC	7 cut(s)	89, 92, 110, 531, 534, 549, 1730
BccI	CCATC	2 cut(s)	1152, 1348
BceAI	ACGGC	1 cut(s)	1660
BcgI	CGANNNNNNTGC	2 cut(s)	466, 500
BciT130I	CCWGG	5 cut(s)	120, 411, 528, 942, 1074
BciVI	GTATCC	1 cut(s)	1097
BcnI	CCSGG	2 cut(s)	176, 177
BcoDI	GTCTC	5 cut(s)	545, 926, 1107, 1589, 1712
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	3 cut(s)	20, 806, 1211
BfoI	RGCGCY	2 cut(s)	563, 1739
BfuAI	ACCTGC	1 cut(s)	1094
BfuI	GTATCC	1 cut(s)	1097
BglI	GCCNNNNNGGC	1 cut(s)	1428
BglII	AGATCT	1 cut(s)	790
BlpI	GCTNAGC	1 cut(s)	127
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	7 cut(s)	120, 176, 177, 411, 528, 942, 1074
Bme18I	GGWCC	3 cut(s)	254, 938, 1488
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	4 cut(s)	254, 823, 938, 1488
BmiI	GGNNCC	1 cut(s)	825
BmrFI	CCNGG	7 cut(s)	120, 176, 177, 411, 528, 942, 1074
BmsI	GCATC	3 cut(s)	568, 989, 1071
BpiI	GAAGAC	2 cut(s)	405, 1261
BpmI	CTGGAG	2 cut(s)	1095, 1752
Bpu1102I	GCTNAGC	1 cut(s)	127
BpuEI	CTTGAG	2 cut(s)	427, 1030
BpuMI	CCSGG	2 cut(s)	176, 177
BsaBI	GATNNNNATC	1 cut(s)	681
BsaJI	CCNNGG	9 cut(s)	174, 175, 409, 526, 973, 994, 1072, 1423, 1491
BsaWI	WCCGGW	1 cut(s)	1606
BsaXI	ACNNNNNCTCC	2 cut(s)	761, 791
Bsc4I	CCNNNNNNNGG	3 cut(s)	644, 1485, 1567
Bse1I	ACTGG	3 cut(s)	108, 376, 1138
Bse3DI	GCAATG	3 cut(s)	382, 1438, 1570
Bse8I	GATNNNNATC	1 cut(s)	681
BseBI	CCWGG	5 cut(s)	120, 411, 528, 942, 1074
BseDI	CCNNGG	9 cut(s)	174, 175, 409, 526, 973, 994, 1072, 1423, 1491
BseGI	GGATG	4 cut(s)	634, 1004, 1340, 1657
BseJI	GATNNNNATC	1 cut(s)	681
BseLI	CCNNNNNNNGG	3 cut(s)	644, 1485, 1567
BseMI	GCAATG	3 cut(s)	382, 1438, 1570
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	3 cut(s)	108, 376, 1138
BseRI	GAGGAG	3 cut(s)	782, 980, 1264
BseXI	GCAGC	7 cut(s)	89, 92, 110, 531, 534, 549, 1730
BsgI	GTGCAG	2 cut(s)	888, 1072
BshFI	GGCC	3 cut(s)	824, 1055, 1422
BsiHKAI	GWGCWC	1 cut(s)	1380
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	3 cut(s)	176, 1128, 1607
BslFI	GGGAC	1 cut(s)	1312
BslI	CCNNNNNNNGG	3 cut(s)	644, 1485, 1567
BsmAI	GTCTC	5 cut(s)	545, 926, 1107, 1589, 1712
BsmBI	CGTCTC	2 cut(s)	1107, 1712
BsmFI	GGGAC	1 cut(s)	1312
BsnI	GGCC	3 cut(s)	824, 1055, 1422
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	1380
Bsp143I	GATC	4 cut(s)	140, 505, 725, 790
Bsp1720I	GCTNAGC	1 cut(s)	127
Bsp19I	CCATGG	1 cut(s)	994
BspACI	CCGC	8 cut(s)	231, 234, 237, 240, 638, 821, 961, 1561
BspANI	GGCC	3 cut(s)	824, 1055, 1422
BspCNI	CTCAG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	825
BspMI	ACCTGC	1 cut(s)	1094
BspPI	GGATC	2 cut(s)	148, 513
BsrDI	GCAATG	3 cut(s)	382, 1438, 1570
BsrI	ACTGG	3 cut(s)	108, 376, 1138
BssECI	CCNNGG	9 cut(s)	174, 175, 409, 526, 973, 994, 1072, 1423, 1491
BssMI	GATC	4 cut(s)	140, 505, 725, 790
BssT1I	CCWWGG	4 cut(s)	973, 994, 1423, 1491
Bst2UI	CCWGG	5 cut(s)	120, 411, 528, 942, 1074
Bst4CI	ACNGT	6 cut(s)	469, 502, 920, 1219, 1295, 1441
Bst6I	CTCTTC	1 cut(s)	759
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstC8I	GCNNGC	4 cut(s)	898, 1024, 1648, 1740
BstDEI	CTNAG	2 cut(s)	127, 602
BstDSI	CCRYGG	1 cut(s)	994
BstEII	GGTNACC	1 cut(s)	968
BstF5I	GGATG	4 cut(s)	634, 1004, 1340, 1657
BstH2I	RGCGCY	2 cut(s)	563, 1739
BstHHI	GCGC	3 cut(s)	453, 562, 1738
BstKTI	GATC	4 cut(s)	143, 508, 728, 793
BstMAI	GTCTC	5 cut(s)	545, 926, 1107, 1589, 1712
BstMBI	GATC	4 cut(s)	140, 505, 725, 790
BstNI	CCWGG	5 cut(s)	120, 411, 528, 942, 1074
BstNSI	RCATGY	3 cut(s)	900, 1062, 1279
BstPI	GGTNACC	1 cut(s)	968
BstSCI	CCNGG	7 cut(s)	118, 174, 175, 409, 526, 940, 1072
BstV1I	GCAGC	7 cut(s)	89, 92, 110, 531, 534, 549, 1730
BstV2I	GAAGAC	2 cut(s)	405, 1261
BstX2I	RGATCY	2 cut(s)	140, 790
BstYI	RGATCY	2 cut(s)	140, 790
BsuI	GTATCC	1 cut(s)	1097
BsuRI	GGCC	3 cut(s)	824, 1055, 1422
BtgI	CCRYGG	1 cut(s)	994
BtsCI	GGATG	4 cut(s)	634, 1004, 1340, 1657
BveI	ACCTGC	1 cut(s)	1094
Cac8I	GCNNGC	4 cut(s)	898, 1024, 1648, 1740
CaiI	CAGNNNCTG	1 cut(s)	918
CfoI	GCGC	3 cut(s)	453, 562, 1738
Cfr13I	GGNCC	4 cut(s)	254, 823, 938, 1488
Cfr9I	CCCGGG	1 cut(s)	175
CseI	GACGC	2 cut(s)	302, 1694
Csp6I	GTAC	4 cut(s)	23, 168, 597, 910
CviAII	CATG	8 cut(s)	65, 641, 897, 995, 1059, 1195, 1276, 1695
CviQI	GTAC	4 cut(s)	23, 168, 597, 910
DdeI	CTNAG	2 cut(s)	127, 602
DpnI	GATC	4 cut(s)	142, 507, 727, 792
DpnII	GATC	4 cut(s)	140, 505, 725, 790
EaeI	YGGCCR	2 cut(s)	1053, 1420
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Ecl136II	GAGCTC	1 cut(s)	1378
Eco130I	CCWWGG	4 cut(s)	973, 994, 1423, 1491
Eco24I	GRGCYC	1 cut(s)	1380
Eco32I	GATATC	1 cut(s)	1009
Eco47I	GGWCC	3 cut(s)	254, 938, 1488
Eco47III	AGCGCT	1 cut(s)	1737
Eco53kI	GAGCTC	1 cut(s)	1378
Eco88I	CYCGRG	1 cut(s)	175
Eco91I	GGTNACC	1 cut(s)	968
EcoICRI	GAGCTC	1 cut(s)	1378
EcoO65I	GGTNACC	1 cut(s)	968
EcoRI	GAATTC	2 cut(s)	1520, 1622
EcoRII	CCWGG	5 cut(s)	118, 409, 526, 940, 1072
EcoRV	GATATC	1 cut(s)	1009
EcoT14I	CCWWGG	4 cut(s)	973, 994, 1423, 1491
EcoT22I	ATGCAT	2 cut(s)	898, 1064
EcoT38I	GRGCYC	1 cut(s)	1380
ErhI	CCWWGG	4 cut(s)	973, 994, 1423, 1491
Esp3I	CGTCTC	2 cut(s)	1107, 1712
FaeI	CATG	8 cut(s)	68, 644, 900, 998, 1062, 1198, 1279, 1698
FaqI	GGGAC	1 cut(s)	1312
FatI	CATG	8 cut(s)	64, 640, 896, 994, 1058, 1194, 1275, 1694
FokI	GGATG	4 cut(s)	621, 1011, 1327, 1644
FriOI	GRGCYC	1 cut(s)	1380
FspBI	CTAG	3 cut(s)	20, 806, 1211
GlaI	GCGC	3 cut(s)	452, 561, 1737
GsuI	CTGGAG	2 cut(s)	1095, 1752
HaeII	RGCGCY	2 cut(s)	563, 1739
HaeIII	GGCC	3 cut(s)	824, 1055, 1422
HapII	CCGG	3 cut(s)	176, 1128, 1607
HgaI	GACGC	2 cut(s)	302, 1694
HhaI	GCGC	3 cut(s)	453, 562, 1738
Hin1II	CATG	8 cut(s)	68, 644, 900, 998, 1062, 1198, 1279, 1698
Hin6I	GCGC	3 cut(s)	451, 560, 1736
HinP1I	GCGC	3 cut(s)	451, 560, 1736
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	261
HinfI	GANTC	5 cut(s)	606, 853, 880, 1257, 1452
HpaII	CCGG	3 cut(s)	176, 1128, 1607
HphI	GGTGA	4 cut(s)	454, 848, 1075, 1550
Hpy166II	GTNNAC	4 cut(s)	364, 462, 597, 1444
Hpy188I	TCNGA	9 cut(s)	272, 498, 550, 715, 725, 852, 879, 1099, 1372
Hpy188III	TCNNGA	2 cut(s)	317, 836
Hpy8I	GTNNAC	4 cut(s)	364, 462, 597, 1444
Hpy99I	CGWCG	2 cut(s)	197, 473
HpyAV	CCTTC	3 cut(s)	242, 1094, 1664
HpyCH4III	ACNGT	6 cut(s)	469, 502, 920, 1219, 1295, 1441
HpyCH4IV	ACGT	3 cut(s)	334, 593, 615
HpyF3I	CTNAG	2 cut(s)	127, 602
HpySE526I	ACGT	3 cut(s)	334, 593, 615
Hsp92II	CATG	8 cut(s)	68, 644, 900, 998, 1062, 1198, 1279, 1698
HspAI	GCGC	3 cut(s)	451, 560, 1736
Kzo9I	GATC	4 cut(s)	140, 505, 725, 790
LmnI	GCTCC	3 cut(s)	52, 310, 1733
Lsp1109I	GCAGC	7 cut(s)	89, 92, 110, 531, 534, 549, 1730
LweI	GCATC	3 cut(s)	568, 989, 1071
MaeI	CTAG	3 cut(s)	20, 806, 1211
MaeII	ACGT	3 cut(s)	334, 593, 615
MaeIII	GTNAC	9 cut(s)	182, 379, 754, 968, 1081, 1213, 1305, 1409, 1499
MalI	GATC	4 cut(s)	142, 507, 727, 792
MboI	GATC	4 cut(s)	140, 505, 725, 790
MboII	GAAGA	5 cut(s)	410, 728, 773, 776, 1266
MfeI	CAATTG	1 cut(s)	862
MflI	RGATCY	2 cut(s)	140, 790
MhlI	GDGCHC	1 cut(s)	1380
MlsI	TGGCCA	1 cut(s)	1422
MluNI	TGGCCA	1 cut(s)	1422
MlyI	GAGTC	3 cut(s)	889, 1251, 1461
MmeI	TCCRAC	2 cut(s)	30, 288
Mox20I	TGGCCA	1 cut(s)	1422
Mph1103I	ATGCAT	2 cut(s)	898, 1064
MscI	TGGCCA	1 cut(s)	1422
MseI	TTAA	4 cut(s)	189, 1034, 1482, 1572
MslI	CAYNNNNRTG	5 cut(s)	639, 1205, 1563, 1693, 1763
Msp20I	TGGCCA	1 cut(s)	1422
MspA1I	CMGCKG	1 cut(s)	1721
MspI	CCGG	3 cut(s)	176, 1128, 1607
MspR9I	CCNGG	7 cut(s)	120, 176, 177, 411, 528, 942, 1074
MunI	CAATTG	1 cut(s)	862
MvaI	CCWGG	5 cut(s)	120, 411, 528, 942, 1074
NciI	CCSGG	2 cut(s)	176, 177
NcoI	CCATGG	1 cut(s)	994
NdeII	GATC	4 cut(s)	140, 505, 725, 790
NlaIII	CATG	8 cut(s)	68, 644, 900, 998, 1062, 1198, 1279, 1698
NlaIV	GGNNCC	1 cut(s)	825
NmeAIII	GCCGAG	1 cut(s)	1031
NmuCI	GTSAC	5 cut(s)	379, 754, 1081, 1213, 1499
NsiI	ATGCAT	2 cut(s)	898, 1064
NspI	RCATGY	3 cut(s)	900, 1062, 1279
PaeI	GCATGC	1 cut(s)	900
PaqCI	CACCTGC	1 cut(s)	1094
PfeI	GAWTC	2 cut(s)	606, 853
PleI	GAGTC	3 cut(s)	888, 1251, 1460
PpsI	GAGTC	3 cut(s)	888, 1251, 1460
PsiI	TTATAA	2 cut(s)	41, 60
Psp124BI	GAGCTC	1 cut(s)	1380
Psp6I	CCWGG	5 cut(s)	118, 409, 526, 940, 1072
PspEI	GGTNACC	1 cut(s)	968
PspGI	CCWGG	5 cut(s)	118, 409, 526, 940, 1072
PspN4I	GGNNCC	1 cut(s)	825
PspPI	GGNCC	4 cut(s)	254, 823, 938, 1488
PstNI	CAGNNNCTG	1 cut(s)	918
PsuI	RGATCY	2 cut(s)	140, 790
PvuII	CAGCTG	1 cut(s)	1721
RsaI	GTAC	4 cut(s)	24, 169, 598, 911
RsaNI	GTAC	4 cut(s)	23, 168, 597, 910
RseI	CAYNNNNRTG	5 cut(s)	639, 1205, 1563, 1693, 1763
SacI	GAGCTC	1 cut(s)	1380
SaqAI	TTAA	4 cut(s)	189, 1034, 1482, 1572
Sau3AI	GATC	4 cut(s)	140, 505, 725, 790
Sau96I	GGNCC	4 cut(s)	254, 823, 938, 1488
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	3 cut(s)	889, 1251, 1461
ScrFI	CCNGG	7 cut(s)	120, 176, 177, 411, 528, 942, 1074
SduI	GDGCHC	1 cut(s)	1380
SfaNI	GCATC	3 cut(s)	568, 989, 1071
SinI	GGWCC	3 cut(s)	254, 938, 1488
SmaI	CCCGGG	1 cut(s)	177
SmiMI	CAYNNNNRTG	5 cut(s)	639, 1205, 1563, 1693, 1763
SmlI	CTYRAG	2 cut(s)	442, 1045
SmoI	CTYRAG	2 cut(s)	442, 1045
SpeI	ACTAGT	1 cut(s)	19
SphI	GCATGC	1 cut(s)	900
SsiI	CCGC	8 cut(s)	231, 234, 237, 240, 638, 821, 961, 1561
SspI	AATATT	2 cut(s)	45, 1362
SspMI	CTAG	3 cut(s)	20, 806, 1211
SstI	GAGCTC	1 cut(s)	1380
StyD4I	CCNGG	7 cut(s)	118, 174, 175, 409, 526, 940, 1072
StyI	CCWWGG	4 cut(s)	973, 994, 1423, 1491
TaaI	ACNGT	6 cut(s)	469, 502, 920, 1219, 1295, 1441
TaiI	ACGT	3 cut(s)	337, 596, 618
TaqI	TCGA	2 cut(s)	609, 837
TaqII	GACCGA	1 cut(s)	1518
TatI	WGTACW	2 cut(s)	22, 909
TauI	GCSGC	6 cut(s)	234, 237, 240, 243, 824, 963
TfiI	GAWTC	2 cut(s)	606, 853
Tru1I	TTAA	4 cut(s)	189, 1034, 1482, 1572
Tru9I	TTAA	4 cut(s)	189, 1034, 1482, 1572
TseFI	GTSAC	5 cut(s)	379, 754, 1081, 1213, 1499
TseI	GCWGC	7 cut(s)	77, 80, 123, 519, 522, 562, 1718
Tsp45I	GTSAC	5 cut(s)	379, 754, 1081, 1213, 1499
TspDTI	ATGAA	8 cut(s)	193, 261, 375, 1370, 1513, 1615, 1635, 1646
TspGWI	ACGGA	1 cut(s)	1131
TspMI	CCCGGG	1 cut(s)	175
VpaK11BI	GGWCC	3 cut(s)	254, 938, 1488
XapI	RAATTY	3 cut(s)	1299, 1520, 1622
XceI	RCATGY	3 cut(s)	900, 1062, 1279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1430
XmaI	CCCGGG	1 cut(s)	175
XspI	CTAG	3 cut(s)	20, 806, 1211
ZrmI	AGTACT	1 cut(s)	24
Zsp2I	ATGCAT	2 cut(s)	898, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.