Rmu_sc0002798.1_g000023
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002798.1
OG0000066
Physical Location & Seq
Forward (+)
108128 .. 110405
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002798.1_g000023.1.cds

Sequence Viewer

Length: 2148 bp
atggctctgtccctagttcacaaggcctcccattccagatctactgcttcttcttcttcttcttctggacttgggtatgacatcttcctgagcttcagaggtgaagacacccgaaagaacttcactgatcacctccacacggcccttctcaactcccgatttcgaacttttagggatcaccctgaactcaaaaaaggggagaatatcagggaagagcttgggaaagccattcgagagtcacgaagttttgtcattgtgttttcgaaaggctacgcctcttccaaatggtgcctcgacgagcttgtcatgatccttgaacgcaagaggacctccaatcatttcgttttaccagtcttctacgacgttgatccatcccatctgaggaagcaaactggaaatgttgctgaagcatttaccgaacaccagaaaactcaatcgttgagtaaagtgagaagatggagggcagcacttagagaagctgcagatctagcaggaatgaatttacaaaatgaagctgacgggcacgagtcgaagttcatccaaaatattgttacagtgattcaagaagagctaggtcgcgtgcccctaagtgatgtccggaaggaattagaggagaagttgttatctgttaaccctgttcttgatgacgctgagaggaagctattgaaaatccaaacgactgtgaagccatggctccataagcttaaagaggctgtctgtgaggctgaggacctgttgcaggagatcgaaacagaagcgttgaggcaaaagatagaacatgaatatgggagtagcacgagtgtacaagagctcgtctctactccatctcatgcttttgactctggtttaacatccttcagggtagaggaagttattgaaagactagacagcatttcaaagcacacaaaatcttttcgagcagccaaaatctttaagagagaaattttggatataacatctaggatatactgcggaatgaaaagaagaatgttcaagcaactcaaggagaagtacttcagagacaatggtggctttttgttacaagaaagattgagtagttttgacggacctcaaggggccaaaatcttttcgagagaagagcttaagaaggccacaaacaacttcgatgacagcagaaaaattggtgaaggaggctatggatttgtttatagaggaacattgccagataaaaaggaggttgccataaaagtgtcaaaaagtaatgccccaatgacccagagtaatcaattcattaatgaggtaattgttctttctcaaatcaaccatagaaatgtcgtgaggctcctcggttgttgtttggaaacccaaacacctctcctggtttacgagtttattagcaatggcactctttatgagcacattcataaaaagaacggcaagggaccgctttctttcgggttacgaatgaagatagcagcagaaacagcaggatccctagcatacttgcactactctgcttcaatgcagattgtgcaccgagatgtgaaaacaatgaatatactattggatgacaatttcaaagctaaagtgtcagattttggagcttcgaaattggttcctgaagatcaaaatcagctgttcactatagtgcaaggtacgcttgggtacctagaccctgaatatctccagtcaggcacattgacagagaagagtgatgtctatagtttcggcattgtccttgtggagctaataacgagtcaagtggcagtttctttcgataagcctgaggcagagagaaacctagcaagcttttttgtaacattggtggaagggaatcgcttgtatcagattcttgatcttgaaataatcaaagagggaagctttgaaatagctgaacgagttgccgatattgccaaaagatgtttaagtttgaaaggaggggataggcctacgatgaaagaagtagctatggagctagagggaatactgctagctatggcaatgcatccagagggaaagcctgatgcttctccgaaagtgaccgactacttgcttgcgaggtcacctgcaaatgattacgttgttgatgttagaggtgatgaaggtgaagttataaccagtattgactacgaccaaagcatgcagaatcaagcccagataatgaagcctgatgatggtgggcgatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

715

Amino Acids

80.7

Weight (kDa)

6.59

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2075
AarI CACCTGC 1 cut(s) 2035
AasI GACNNNNNNGTC 1 cut(s) 302
Acc36I ACCTGC 1 cut(s) 2035
Acc65I GGTACC 1 cut(s) 1626
AccB1I GGYRCC 2 cut(s) 288, 1626
AccII CGCG 1 cut(s) 579
AccIII TCCGGA 1 cut(s) 597
AciI CCGC 2 cut(s) 972, 1406
AclWI GGATC 5 cut(s) 183, 304, 362, 1446, 1459
AcsI RAATTY 2 cut(s) 499, 942
AcuI CTGAAG 5 cut(s) 79, 426, 841, 1000, 1602
AfaI GTAC 4 cut(s) 804, 1013, 1618, 1628
AfiI CCNNNNNNNGG 4 cut(s) 139, 381, 739, 2135
AflII CTTAAG 1 cut(s) 1103
AjnI CCWGG 1 cut(s) 1338
AjuI GAANNNNNNNTTGG 2 cut(s) 1508, 1540
AleI CACNNNNGTG 1 cut(s) 1607
Alw21I GWGCWC 3 cut(s) 813, 1380, 1497
Alw26I GTCTC 2 cut(s) 820, 1014
Alw44I GTGCAC 1 cut(s) 1493
AlwI GGATC 5 cut(s) 183, 304, 362, 1446, 1459
Aor13HI TCCGGA 1 cut(s) 597
AoxI GGCC 5 cut(s) 24, 141, 1077, 1110, 1907
ApaLI GTGCAC 1 cut(s) 1493
ApeKI GCWGC 4 cut(s) 464, 479, 920, 1436
ApoI RAATTY 2 cut(s) 499, 942
AseI ATTAAT 1 cut(s) 1254
Asp700I GAANNNNTTC 1 cut(s) 1013
Asp718I GGTACC 1 cut(s) 1626
AspS9I GGNCC 6 cut(s) 142, 327, 730, 1067, 1077, 1403
AsuHPI GGTGA 7 cut(s) 113, 122, 170, 1157, 2016, 2069, 2078
AsuII TTCGAA 3 cut(s) 163, 263, 1568
AsuNHI GCTAGC 1 cut(s) 1951
AvaII GGWCC 4 cut(s) 327, 730, 1067, 1403
AxyI CCTNAGG 1 cut(s) 1746
BaeGI GKGCMC 3 cut(s) 525, 585, 1497
BamHI GGATCC 1 cut(s) 1451
BanI GGYRCC 2 cut(s) 288, 1626
BanII GRGCYC 1 cut(s) 813
BarI GAAGNNNNNNTAC 2 cut(s) 68, 100
BauI CACGAG 2 cut(s) 524, 796
BbsI GAAGAC 2 cut(s) 111, 346
Bbv12I GWGCWC 3 cut(s) 813, 1380, 1497
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 4 cut(s) 466, 476, 932, 1448
BccI CCATC 5 cut(s) 379, 384, 450, 832, 2129
BceAI ACGGC 2 cut(s) 156, 1411
BciT130I CCWGG 1 cut(s) 1340
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 820, 1014
BfmI CTRYAG 3 cut(s) 480, 1605, 1681
BfrI CTTAAG 1 cut(s) 1103
BfuAI ACCTGC 1 cut(s) 2035
BglII AGATCT 2 cut(s) 38, 484
BisI GCNGC 4 cut(s) 465, 480, 921, 1437
BlsI GCNGC 4 cut(s) 466, 481, 922, 1438
BmcAI AGTACT 1 cut(s) 1013
Bme1390I CCNGG 1 cut(s) 1340
Bme18I GGWCC 4 cut(s) 327, 730, 1067, 1403
BmgT120I GGNCC 6 cut(s) 142, 327, 730, 1067, 1077, 1403
BmiI GGNNCC 8 cut(s) 290, 695, 1078, 1304, 1404, 1453, 1578, 1628
BmrFI CCNGG 1 cut(s) 1340
BmsI GCATC 2 cut(s) 1975, 1975
BmtI GCTAGC 1 cut(s) 1955
BpiI GAAGAC 2 cut(s) 111, 346
BplI GAGNNNNNCTC 2 cut(s) 800, 832
BpmI CTGGAG 1 cut(s) 1631
Bpu10I CCTNAGC 2 cut(s) 89, 726
Bpu14I TTCGAA 3 cut(s) 163, 263, 1568
BpuEI CTTGAG 2 cut(s) 986, 1056
BsaBI GATNNNNATC 1 cut(s) 1590
BsaJI CCNNGG 2 cut(s) 689, 1306
BsaWI WCCGGW 1 cut(s) 597
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 605, 635
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 381, 739, 2135
Bse1I ACTGG 4 cut(s) 350, 397, 1648, 2079
Bse21I CCTNAGG 1 cut(s) 1746
Bse3DI GCAATG 3 cut(s) 1178, 1366, 1968
Bse8I GATNNNNATC 1 cut(s) 1590
BseAI TCCGGA 1 cut(s) 597
BseBI CCWGG 1 cut(s) 1340
BseDI CCNNGG 2 cut(s) 689, 1306
BseGI GGATG 5 cut(s) 371, 537, 851, 1534, 1966
BseJI GATNNNNATC 1 cut(s) 1590
BseLI CCNNNNNNNGG 4 cut(s) 139, 381, 739, 2135
BseMI GCAATG 3 cut(s) 1178, 1366, 1968
BseMII CTCAG 5 cut(s) 80, 371, 642, 717, 1737
BseNI ACTGG 4 cut(s) 350, 397, 1648, 2079
BseRI GAGGAG 2 cut(s) 626, 1295
BseSI GKGCMC 3 cut(s) 525, 585, 1497
BseXI GCAGC 4 cut(s) 466, 476, 932, 1448
Bsh1236I CGCG 1 cut(s) 579
BshFI GGCC 5 cut(s) 26, 143, 1079, 1112, 1909
BshNI GGYRCC 2 cut(s) 288, 1626
BsiHKAI GWGCWC 3 cut(s) 813, 1380, 1497
BsiSI CCGG 1 cut(s) 598
BslFI GGGAC 1 cut(s) 1416
BslI CCNNNNNNNGG 4 cut(s) 139, 381, 739, 2135
BsmAI GTCTC 2 cut(s) 820, 1014
BsmBI CGTCTC 1 cut(s) 820
BsmFI GGGAC 1 cut(s) 1416
BsnI GGCC 5 cut(s) 26, 143, 1079, 1112, 1909
Bsp119I TTCGAA 3 cut(s) 163, 263, 1568
Bsp1286I GDGCHC 5 cut(s) 525, 585, 813, 1380, 1497
Bsp13I TCCGGA 1 cut(s) 597
Bsp1407I TGTACA 1 cut(s) 802
Bsp19I CCATGG 1 cut(s) 689
BspACI CCGC 2 cut(s) 972, 1406
BspANI GGCC 5 cut(s) 26, 143, 1079, 1112, 1909
BspCNI CTCAG 5 cut(s) 81, 372, 643, 718, 1738
BspEI TCCGGA 1 cut(s) 597
BspFNI CGCG 1 cut(s) 579
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 8 cut(s) 290, 695, 1078, 1304, 1404, 1453, 1578, 1628
BspMAI CTGCAG 1 cut(s) 484
BspMI ACCTGC 1 cut(s) 2035
BspOI GCTAGC 1 cut(s) 1955
BspPI GGATC 5 cut(s) 183, 304, 362, 1446, 1459
BspQI GCTCTTC 3 cut(s) 207, 561, 1092
BspT104I TTCGAA 3 cut(s) 163, 263, 1568
BspT107I GGYRCC 2 cut(s) 288, 1626
BspTI CTTAAG 1 cut(s) 1103
BsrDI GCAATG 3 cut(s) 1178, 1366, 1968
BsrGI TGTACA 1 cut(s) 802
BsrI ACTGG 4 cut(s) 350, 397, 1648, 2079
BssECI CCNNGG 2 cut(s) 689, 1306
BssSI CACGAG 2 cut(s) 524, 796
BssT1I CCWWGG 1 cut(s) 689
Bst2BI CACGAG 2 cut(s) 524, 796
Bst2UI CCWGG 1 cut(s) 1340
Bst4CI ACNGT 2 cut(s) 556, 682
Bst6I CTCTTC 5 cut(s) 207, 283, 561, 1092, 1664
BstAFI CTTAAG 1 cut(s) 1103
BstAPI GCANNNNNTGC 1 cut(s) 1492
BstAUI TGTACA 1 cut(s) 802
BstBI TTCGAA 3 cut(s) 163, 263, 1568
BstC8I GCNNGC 5 cut(s) 581, 1768, 1953, 2016, 2102
BstDEI CTNAG 7 cut(s) 89, 380, 470, 587, 651, 726, 1746
BstDSI CCRYGG 1 cut(s) 689
BstEII GGTNACC 1 cut(s) 2022
BstENI CCTNNNNNAGG 1 cut(s) 737
BstF5I GGATG 5 cut(s) 371, 537, 851, 1534, 1966
BstFNI CGCG 1 cut(s) 579
BstMAI GTCTC 2 cut(s) 820, 1014
BstMWI GCNNNNNNNGC 6 cut(s) 488, 700, 1445, 1492, 1618, 1871
BstNI CCWGG 1 cut(s) 1340
BstNSI RCATGY 1 cut(s) 2104
BstPI GGTNACC 1 cut(s) 2022
BstSCI CCNGG 1 cut(s) 1338
BstSFI CTRYAG 3 cut(s) 480, 1605, 1681
BstSLI GKGCMC 3 cut(s) 525, 585, 1497
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 4 cut(s) 466, 476, 932, 1448
BstV2I GAAGAC 2 cut(s) 111, 346
BstX2I RGATCY 3 cut(s) 38, 484, 1451
BstYI RGATCY 3 cut(s) 38, 484, 1451
Bsu36I CCTNAGG 1 cut(s) 1746
BsuRI GGCC 5 cut(s) 26, 143, 1079, 1112, 1909
BtgI CCRYGG 1 cut(s) 689
BtsCI GGATG 5 cut(s) 371, 537, 851, 1534, 1966
BtsIMutI CAGTG 2 cut(s) 123, 561
BveI ACCTGC 1 cut(s) 2035
Cac8I GCNNGC 5 cut(s) 581, 1768, 1953, 2016, 2102
CciI TCATGA 1 cut(s) 306
Cfr13I GGNCC 6 cut(s) 142, 327, 730, 1067, 1077, 1403
CseI GACGC 1 cut(s) 656
Csp6I GTAC 4 cut(s) 803, 1012, 1617, 1627
CviAII CATG 5 cut(s) 307, 690, 779, 830, 2101
CviQI GTAC 4 cut(s) 803, 1012, 1617, 1627
DdeI CTNAG 7 cut(s) 89, 380, 470, 587, 651, 726, 1746
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eam1104I CTCTTC 5 cut(s) 207, 283, 561, 1092, 1664
EarI CTCTTC 5 cut(s) 207, 283, 561, 1092, 1664
Ecl136II GAGCTC 1 cut(s) 811
Eco130I CCWWGG 1 cut(s) 689
Eco147I AGGCCT 2 cut(s) 26, 1909
Eco24I GRGCYC 1 cut(s) 813
Eco47I GGWCC 4 cut(s) 327, 730, 1067, 1403
Eco53kI GAGCTC 1 cut(s) 811
Eco57I CTGAAG 5 cut(s) 79, 426, 841, 1000, 1602
Eco81I CCTNAGG 1 cut(s) 1746
Eco91I GGTNACC 1 cut(s) 2022
EcoICRI GAGCTC 1 cut(s) 811
EcoNI CCTNNNNNAGG 1 cut(s) 737
EcoO109I RGGNCCY 2 cut(s) 327, 730
EcoO65I GGTNACC 1 cut(s) 2022
EcoRII CCWGG 1 cut(s) 1338
EcoT14I CCWWGG 1 cut(s) 689
EcoT22I ATGCAT 1 cut(s) 1968
EcoT38I GRGCYC 1 cut(s) 813
ErhI CCWWGG 1 cut(s) 689
Esp3I CGTCTC 1 cut(s) 820
FaeI CATG 5 cut(s) 310, 693, 782, 833, 2104
FalI AAGNNNNNCTT 2 cut(s) 1605, 1637
FaqI GGGAC 1 cut(s) 1416
FatI CATG 5 cut(s) 306, 689, 778, 829, 2100
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 4 cut(s) 465, 480, 921, 1437
FokI GGATG 5 cut(s) 358, 524, 838, 1541, 1953
FriOI GRGCYC 1 cut(s) 813
Fsp4HI GCNGC 4 cut(s) 465, 480, 921, 1437
GluI GCNGC 4 cut(s) 465, 480, 921, 1437
GsuI CTGGAG 1 cut(s) 1631
HaeIII GGCC 5 cut(s) 26, 143, 1079, 1112, 1909
HapII CCGG 1 cut(s) 598
HgaI GACGC 1 cut(s) 656
Hin1II CATG 5 cut(s) 310, 693, 782, 833, 2104
HincII GTYRAC 1 cut(s) 631
HindII GTYRAC 1 cut(s) 631
HindIII AAGCTT 3 cut(s) 701, 1768, 1840
HinfI GANTC 8 cut(s) 236, 527, 559, 839, 1717, 1795, 1810, 2107
HpaI GTTAAC 1 cut(s) 631
HpaII CCGG 1 cut(s) 598
HphI GGTGA 7 cut(s) 113, 122, 170, 1157, 2016, 2069, 2078
Hpy166II GTNNAC 6 cut(s) 19, 631, 803, 1345, 1495, 1602
Hpy188I TCNGA 6 cut(s) 98, 381, 1019, 1555, 1809, 1995
Hpy8I GTNNAC 6 cut(s) 19, 631, 803, 1345, 1495, 1602
Hpy99I CGWCG 2 cut(s) 299, 365
HpyAV CCTTC 7 cut(s) 155, 595, 865, 1102, 1142, 1784, 2057
HpyCH4III ACNGT 2 cut(s) 556, 682
HpyCH4IV ACGT 2 cut(s) 363, 2040
HpyCH4V TGCA 9 cut(s) 482, 739, 1468, 1486, 1495, 1612, 1966, 2030, 2104
HpyF10VI GCNNNNNNNGC 6 cut(s) 488, 700, 1445, 1492, 1618, 1871
HpyF3I CTNAG 7 cut(s) 89, 380, 470, 587, 651, 726, 1746
HpySE526I ACGT 2 cut(s) 363, 2040
Hsp92II CATG 5 cut(s) 310, 693, 782, 833, 2104
Kpn2I TCCGGA 1 cut(s) 597
KpnI GGTACC 1 cut(s) 1630
Ksp22I TGATCA 1 cut(s) 127
KspAI GTTAAC 1 cut(s) 631
LguI GCTCTTC 3 cut(s) 207, 561, 1092
LmnI GCTCC 5 cut(s) 699, 1308, 1562, 1705, 1933
Lsp1109I GCAGC 4 cut(s) 466, 476, 932, 1448
LweI GCATC 2 cut(s) 1975, 1975
MaeII ACGT 2 cut(s) 363, 2040
MaeIII GTNAC 7 cut(s) 237, 550, 1038, 1419, 1777, 1999, 2022
MflI RGATCY 3 cut(s) 38, 484, 1451
MhlI GDGCHC 5 cut(s) 525, 585, 813, 1380, 1497
MluCI AATT 8 cut(s) 499, 605, 942, 1140, 1247, 1263, 1534, 1571
MlyI GAGTC 4 cut(s) 245, 536, 833, 1726
Mph1103I ATGCAT 1 cut(s) 1968
MroI TCCGGA 1 cut(s) 597
MroXI GAANNNNTTC 1 cut(s) 1013
MseI TTAA 7 cut(s) 630, 705, 848, 933, 1104, 1254, 1886
MslI CAYNNNNRTG 5 cut(s) 783, 1208, 1290, 1500, 1607
MspA1I CMGCKG 1 cut(s) 1597
MspCI CTTAAG 1 cut(s) 1103
MspI CCGG 1 cut(s) 598
MspR9I CCNGG 1 cut(s) 1340
MvaI CCWGG 1 cut(s) 1340
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 6 cut(s) 488, 700, 1445, 1492, 1618, 1871
NcoI CCATGG 1 cut(s) 689
NheI GCTAGC 1 cut(s) 1951
NlaIII CATG 5 cut(s) 310, 693, 782, 833, 2104
NlaIV GGNNCC 8 cut(s) 290, 695, 1078, 1304, 1404, 1453, 1578, 1628
NmuCI GTSAC 3 cut(s) 237, 1999, 2022
NsiI ATGCAT 1 cut(s) 1968
NspI RCATGY 1 cut(s) 2104
NspV TTCGAA 3 cut(s) 163, 263, 1568
OliI CACNNNNGTG 1 cut(s) 1607
PaeI GCATGC 1 cut(s) 2104
PagI TCATGA 1 cut(s) 306
PaqCI CACCTGC 1 cut(s) 2035
PceI AGGCCT 2 cut(s) 26, 1909
PciSI GCTCTTC 3 cut(s) 207, 561, 1092
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 1013
PfeI GAWTC 4 cut(s) 559, 1795, 1810, 2107
PkrI GCNGC 4 cut(s) 466, 481, 922, 1438
PleI GAGTC 4 cut(s) 244, 535, 833, 1725
PpsI GAGTC 4 cut(s) 244, 535, 833, 1725
PpuMI RGGWCCY 2 cut(s) 327, 730
PshBI ATTAAT 1 cut(s) 1254
PsiI TTATAA 1 cut(s) 2075
Psp124BI GAGCTC 1 cut(s) 813
Psp5II RGGWCCY 2 cut(s) 327, 730
Psp6I CCWGG 1 cut(s) 1338
PspEI GGTNACC 1 cut(s) 2022
PspGI CCWGG 1 cut(s) 1338
PspN4I GGNNCC 8 cut(s) 290, 695, 1078, 1304, 1404, 1453, 1578, 1628
PspPI GGNCC 6 cut(s) 142, 327, 730, 1067, 1077, 1403
PspPPI RGGWCCY 2 cut(s) 327, 730
PstI CTGCAG 1 cut(s) 484
PsuI RGATCY 3 cut(s) 38, 484, 1451
PvuII CAGCTG 1 cut(s) 1597
RsaI GTAC 4 cut(s) 804, 1013, 1618, 1628
RsaNI GTAC 4 cut(s) 803, 1012, 1617, 1627
RseI CAYNNNNRTG 5 cut(s) 783, 1208, 1290, 1500, 1607
SacI GAGCTC 1 cut(s) 813
SapI GCTCTTC 3 cut(s) 207, 561, 1092
SaqAI TTAA 7 cut(s) 630, 705, 848, 933, 1104, 1254, 1886
SatI GCNGC 4 cut(s) 465, 480, 921, 1437
Sau96I GGNCC 6 cut(s) 142, 327, 730, 1067, 1077, 1403
ScaI AGTACT 1 cut(s) 1013
SchI GAGTC 4 cut(s) 245, 536, 833, 1726
ScrFI CCNGG 1 cut(s) 1340
SduI GDGCHC 5 cut(s) 525, 585, 813, 1380, 1497
SfaNI GCATC 2 cut(s) 1975, 1975
SfcI CTRYAG 3 cut(s) 480, 1605, 1681
SfuI TTCGAA 3 cut(s) 163, 263, 1568
SinI GGWCC 4 cut(s) 327, 730, 1067, 1403
SmiMI CAYNNNNRTG 5 cut(s) 783, 1208, 1290, 1500, 1607
SmlI CTYRAG 3 cut(s) 1001, 1071, 1103
SmoI CTYRAG 3 cut(s) 1001, 1071, 1103
SphI GCATGC 1 cut(s) 2104
Sse9I AATT 8 cut(s) 499, 605, 942, 1140, 1247, 1263, 1534, 1571
SseBI AGGCCT 2 cut(s) 26, 1909
SsiI CCGC 2 cut(s) 972, 1406
SspI AATATT 1 cut(s) 547
SstI GAGCTC 1 cut(s) 813
StuI AGGCCT 2 cut(s) 26, 1909
StyD4I CCNGG 1 cut(s) 1338
StyI CCWWGG 1 cut(s) 689
TaaI ACNGT 2 cut(s) 556, 682
TaiI ACGT 2 cut(s) 366, 2043
TaqII GACCGA 1 cut(s) 2018
TasI AATT 8 cut(s) 499, 605, 942, 1140, 1247, 1263, 1534, 1571
TatI WGTACW 2 cut(s) 802, 1011
TfiI GAWTC 4 cut(s) 559, 1795, 1810, 2107
Tru1I TTAA 7 cut(s) 630, 705, 848, 933, 1104, 1254, 1886
Tru9I TTAA 7 cut(s) 630, 705, 848, 933, 1104, 1254, 1886
TscAI CASTG 2 cut(s) 130, 561
TseFI GTSAC 3 cut(s) 237, 1999, 2022
TseI GCWGC 4 cut(s) 464, 479, 920, 1436
Tsp45I GTSAC 3 cut(s) 237, 1999, 2022
TspGWI ACGGA 1 cut(s) 1080
TspRI CASTG 2 cut(s) 130, 561
Vha464I CTTAAG 1 cut(s) 1103
VneI GTGCAC 1 cut(s) 1493
VpaK11BI GGWCC 4 cut(s) 327, 730, 1067, 1403
VspI ATTAAT 1 cut(s) 1254
XagI CCTNNNNNAGG 1 cut(s) 737
XapI RAATTY 2 cut(s) 499, 942
XceI RCATGY 1 cut(s) 2104
XmnI GAANNNNTTC 1 cut(s) 1013
ZrmI AGTACT 1 cut(s) 1013
Zsp2I ATGCAT 1 cut(s) 1968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.