Rroxscaffold_1G00060240

Wall-associated receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
82444949 .. 82445488
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060240.1

Sequence Viewer

Length: 540 bp
ATGAAGATAGCAGTTGAAACGGCAGAAGCACTAGCATACTTACACTCCTCAACTTCAGATCCAATCATACATCGAGATGTGAAAGCAGAAAATATACTCTTAGATGATGCTTATACAGCAAAAGTATCAGACTTTGGAGCTTCAAGATTGATTCCATCAGGTCAAACTGAAATACAAACTTTAGTGCTAGGGACATTCGGTTACCTGGACCCTGAATATCTGCAATCGAACCAACTAACAGAAAAGAGTGACGTCTACAGCTTTGGTGTTGTCCTAGTGGAGCTACTAACAAGCAAAATGGCACTTTCTAAGGACAGATGCTTAACAAGCATCTTTATTTCTTCCATGGATGAAGATTGCTTGAATCAAATTCTTGACGATGACATTGTGAATGAGGGAAACATTGAGACAGTAAAGAATGTGGCCAGTCTTGCAAAAAAGATGCTTGAGGGTAAAAGGGGAGGAAAGGCCTACCATGAAAGAAGTAGCAATGGAGCTAGAGGGAATGAGGATTACAGCAAAGCACCCATGGGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

179

Amino Acids

19.59

Weight (kDa)

4.8

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 150 5e-28 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 2 - 98 1.9e-22 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 255
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 1 cut(s) 369
AcuI CTGAAG 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 252
AgsI TTSAA 3 cut(s) 17, 144, 364
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 4 cut(s) 140, 261, 283, 497
AluI AGCT 4 cut(s) 140, 261, 283, 497
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 1 cut(s) 53
AoxI GGCC 2 cut(s) 423, 468
ApoI RAATTY 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 208
AvaII GGWCC 1 cut(s) 208
BalI TGGCCA 1 cut(s) 425
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 4 cut(s) 32, 188, 275, 498
BfmI CTRYAG 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 4 cut(s) 97, 308, 339, 432
BpuEI CTTGAG 1 cut(s) 467
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 345, 528
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bse1I ACTGG 1 cut(s) 426
Bse3DI GCAATG 1 cut(s) 496
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 345, 528
BseGI GGATG 1 cut(s) 355
BseMI GCAATG 1 cut(s) 496
BseNI ACTGG 1 cut(s) 426
BseRI GAGGAG 1 cut(s) 37
BshFI GGCC 2 cut(s) 425, 470
BslFI GGGAC 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 2 cut(s) 425, 470
Bsp143I GATC 1 cut(s) 58
Bsp19I CCATGG 2 cut(s) 345, 528
BspANI GGCC 2 cut(s) 425, 470
BspLI GGNNCC 1 cut(s) 210
BspPI GGATC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 496
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 2 cut(s) 345, 528
BssMI GATC 1 cut(s) 58
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 2 cut(s) 345, 528
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 412
BstACI GRCGYC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 100, 309
BstDSI CCRYGG 2 cut(s) 345, 528
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 1 cut(s) 58
BstMWI GCNNNNNNNGC 3 cut(s) 116, 327, 431
BstNI CCWGG 1 cut(s) 206
BstPI GGTNACC 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 2 cut(s) 425, 470
BtgI CCRYGG 2 cut(s) 345, 528
BtsCI GGATG 1 cut(s) 355
Cfr13I GGNCC 1 cut(s) 208
CviAII CATG 3 cut(s) 346, 476, 529
CviJI RGCY 6 cut(s) 140, 261, 283, 425, 470, 497
CviKI_1 RGCY 6 cut(s) 140, 261, 283, 425, 470, 497
DdeI CTNAG 2 cut(s) 100, 309
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 423
Eco130I CCWWGG 2 cut(s) 345, 528
Eco147I AGGCCT 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 200
EcoO65I GGTNACC 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 2 cut(s) 345, 528
ErhI CCWWGG 2 cut(s) 345, 528
FaeI CATG 3 cut(s) 349, 479, 532
FaiI YATR 7 cut(s) 37, 68, 95, 114, 347, 477, 530
FaqI GGGAC 1 cut(s) 205
FatI CATG 3 cut(s) 345, 475, 528
FblI GTMKAC 1 cut(s) 255
FokI GGATG 1 cut(s) 362
FspBI CTAG 4 cut(s) 32, 188, 275, 498
HaeIII GGCC 2 cut(s) 425, 470
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 3 cut(s) 349, 479, 532
HinfI GANTC 2 cut(s) 151, 364
Hpy166II GTNNAC 1 cut(s) 256
Hpy188I TCNGA 2 cut(s) 58, 130
Hpy188III TCNNGA 3 cut(s) 74, 144, 374
Hpy8I GTNNAC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 223, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 327, 431
HpyF3I CTNAG 2 cut(s) 100, 309
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 3 cut(s) 349, 479, 532
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 3 cut(s) 137, 280, 494
LpnPI CCDG 5 cut(s) 144, 191, 218, 225, 439
LweI GCATC 4 cut(s) 97, 308, 339, 432
MaeI CTAG 4 cut(s) 32, 188, 275, 498
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 200, 248
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 3 cut(s) 16, 333, 365
MflI RGATCY 1 cut(s) 58
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 1 cut(s) 369
MluNI TGGCCA 1 cut(s) 425
MnlI CCTC 6 cut(s) 58, 388, 442, 455, 494, 502
Mox20I TGGCCA 1 cut(s) 425
MscI TGGCCA 1 cut(s) 425
MseI TTAA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 75
Msp20I TGGCCA 1 cut(s) 425
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 3 cut(s) 116, 327, 431
NcoI CCATGG 2 cut(s) 345, 528
NdeII GATC 1 cut(s) 58
NlaIII CATG 3 cut(s) 349, 479, 532
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 248
PceI AGGCCT 1 cut(s) 470
PfeI GAWTC 2 cut(s) 151, 364
Psp6I CCWGG 1 cut(s) 204
PspEI GGTNACC 1 cut(s) 200
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 208
PsuI RGATCY 1 cut(s) 58
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 1 cut(s) 323
Sau3AI GATC 1 cut(s) 58
Sau96I GGNCC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 206
SetI ASST 7 cut(s) 142, 163, 207, 255, 263, 285, 499
SfaNI GCATC 4 cut(s) 97, 308, 339, 432
SfcI CTRYAG 1 cut(s) 256
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 1 cut(s) 369
SseBI AGGCCT 1 cut(s) 470
SspMI CTAG 4 cut(s) 32, 188, 275, 498
StuI AGGCCT 1 cut(s) 470
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 2 cut(s) 345, 528
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 1 cut(s) 255
TaqI TCGA 2 cut(s) 73, 227
TasI AATT 1 cut(s) 369
TfiI GAWTC 2 cut(s) 151, 364
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TseFI GTSAC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 248
TspDTI ATGAA 3 cut(s) 17, 366, 492
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 369
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 4 cut(s) 32, 188, 275, 498
ZraI GACGTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.