DNA RNA polymerases superfamily protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 671 |
| Acc16I | TGCGCA | 1 cut(s) | 1267 |
| Acc36I | ACCTGC | 2 cut(s) | 1259, 1367 |
| Acc65I | GGTACC | 1 cut(s) | 476 |
| AccB1I | GGYRCC | 2 cut(s) | 56, 476 |
| AccI | GTMKAC | 4 cut(s) | 517, 932, 1139, 1425 |
| AciI | CCGC | 1 cut(s) | 112 |
| AclWI | GGATC | 4 cut(s) | 287, 681, 694, 716 |
| AcsI | RAATTY | 2 cut(s) | 485, 1337 |
| AfaI | GTAC | 4 cut(s) | 170, 358, 478, 602 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 874, 970, 1492 |
| AflII | CTTAAG | 1 cut(s) | 383 |
| AgsI | TTSAA | 6 cut(s) | 140, 465, 503, 652, 787, 1280 |
| AjnI | CCWGG | 3 cut(s) | 325, 808, 1192 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 536, 568 |
| AleI | CACNNNNGTG | 2 cut(s) | 75, 1616 |
| AluBI | AGCT | 8 cut(s) | 39, 204, 670, 683, 778, 1307, 1313, 1530 |
| AluI | AGCT | 8 cut(s) | 39, 204, 670, 683, 778, 1307, 1313, 1530 |
| Alw26I | GTCTC | 2 cut(s) | 602, 1277 |
| AlwI | GGATC | 4 cut(s) | 287, 681, 694, 716 |
| Ama87I | CYCGRG | 1 cut(s) | 1560 |
| AoxI | GGCC | 3 cut(s) | 865, 1123, 1383 |
| ApeKI | GCWGC | 3 cut(s) | 39, 368, 680 |
| ApoI | RAATTY | 2 cut(s) | 485, 1337 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1583 |
| Asp718I | GGTACC | 1 cut(s) | 476 |
| AspLEI | GCGC | 3 cut(s) | 1268, 1485, 1545 |
| AspS9I | GGNCC | 2 cut(s) | 866, 1151 |
| AsuC2I | CCSGG | 2 cut(s) | 306, 874 |
| AsuHPI | GGTGA | 6 cut(s) | 202, 341, 417, 902, 952, 1019 |
| AvaI | CYCGRG | 1 cut(s) | 1560 |
| AvaII | GGWCC | 1 cut(s) | 1151 |
| BamHI | GGATCC | 1 cut(s) | 686 |
| BanI | GGYRCC | 2 cut(s) | 56, 476 |
| BanII | GRGCYC | 1 cut(s) | 696 |
| BauI | CACGAG | 1 cut(s) | 339 |
| BbsI | GAAGAC | 1 cut(s) | 436 |
| BbvI | GCAGC | 3 cut(s) | 26, 355, 692 |
| BccI | CCATC | 2 cut(s) | 256, 1208 |
| BciT130I | CCWGG | 3 cut(s) | 327, 810, 1194 |
| BciVI | GTATCC | 1 cut(s) | 312 |
| BcnI | CCSGG | 2 cut(s) | 306, 874 |
| BcoDI | GTCTC | 2 cut(s) | 602, 1277 |
| BfaI | CTAG | 3 cut(s) | 21, 30, 311 |
| BfmI | CTRYAG | 3 cut(s) | 40, 252, 1140 |
| BfoI | RGCGCY | 1 cut(s) | 1546 |
| BfrI | CTTAAG | 1 cut(s) | 383 |
| BfuAI | ACCTGC | 2 cut(s) | 1259, 1367 |
| BfuI | GTATCC | 1 cut(s) | 312 |
| BisI | GCNGC | 3 cut(s) | 40, 369, 681 |
| BlsI | GCNGC | 3 cut(s) | 41, 370, 682 |
| Bme1390I | CCNGG | 5 cut(s) | 306, 327, 810, 874, 1194 |
| Bme18I | GGWCC | 1 cut(s) | 1151 |
| BmeT110I | CYCGRG | 1 cut(s) | 1560 |
| BmgT120I | GGNCC | 2 cut(s) | 866, 1151 |
| BmiI | GGNNCC | 4 cut(s) | 58, 478, 688, 1153 |
| BmrFI | CCNGG | 5 cut(s) | 306, 327, 810, 874, 1194 |
| BmrI | ACTGGG | 1 cut(s) | 1612 |
| BmsI | GCATC | 4 cut(s) | 113, 783, 1457, 1486 |
| BmuI | ACTGGG | 1 cut(s) | 1612 |
| BpiI | GAAGAC | 1 cut(s) | 436 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1314 |
| BpuEI | CTTGAG | 1 cut(s) | 1621 |
| BpuMI | CCSGG | 2 cut(s) | 306, 874 |
| BsaJI | CCNNGG | 7 cut(s) | 428, 480, 808, 873, 1192, 1435, 1491 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 874, 970, 1492 |
| Bse1I | ACTGG | 4 cut(s) | 364, 534, 1295, 1607 |
| BseBI | CCWGG | 3 cut(s) | 327, 810, 1194 |
| BseDI | CCNNGG | 7 cut(s) | 428, 480, 808, 873, 1192, 1435, 1491 |
| BseGI | GGATG | 4 cut(s) | 104, 989, 1448, 1501 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 874, 970, 1492 |
| BseMII | CTCAG | 2 cut(s) | 87, 1328 |
| BseNI | ACTGG | 4 cut(s) | 364, 534, 1295, 1607 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseXI | GCAGC | 3 cut(s) | 26, 355, 692 |
| BseYI | CCCAGC | 1 cut(s) | 363 |
| BsgI | GTGCAG | 1 cut(s) | 510 |
| BshFI | GGCC | 3 cut(s) | 867, 1125, 1385 |
| BshNI | GGYRCC | 2 cut(s) | 56, 476 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1560 |
| BsiSI | CCGG | 2 cut(s) | 305, 873 |
| BslFI | GGGAC | 2 cut(s) | 1137, 1174 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 874, 970, 1492 |
| BsmAI | GTCTC | 2 cut(s) | 602, 1277 |
| BsmFI | GGGAC | 2 cut(s) | 1137, 1174 |
| BsmI | GAATGC | 1 cut(s) | 180 |
| BsnI | GGCC | 3 cut(s) | 867, 1125, 1385 |
| BsoBI | CYCGRG | 1 cut(s) | 1560 |
| Bsp1286I | GDGCHC | 1 cut(s) | 696 |
| Bsp143I | GATC | 5 cut(s) | 292, 686, 708, 1177, 1477 |
| BspACI | CCGC | 1 cut(s) | 112 |
| BspANI | GGCC | 3 cut(s) | 867, 1125, 1385 |
| BspCNI | CTCAG | 2 cut(s) | 88, 1327 |
| BspHI | TCATGA | 1 cut(s) | 909 |
| BspLI | GGNNCC | 4 cut(s) | 58, 478, 688, 1153 |
| BspMAI | CTGCAG | 2 cut(s) | 44, 256 |
| BspMI | ACCTGC | 2 cut(s) | 1259, 1367 |
| BspPI | GGATC | 4 cut(s) | 287, 681, 694, 716 |
| BspT107I | GGYRCC | 2 cut(s) | 56, 476 |
| BspTI | CTTAAG | 1 cut(s) | 383 |
| BsrI | ACTGG | 4 cut(s) | 364, 534, 1295, 1607 |
| BssECI | CCNNGG | 7 cut(s) | 428, 480, 808, 873, 1192, 1435, 1491 |
| BssMI | GATC | 5 cut(s) | 292, 686, 708, 1177, 1477 |
| BssNAI | GTATAC | 2 cut(s) | 518, 933 |
| BssSI | CACGAG | 1 cut(s) | 339 |
| BssT1I | CCWWGG | 3 cut(s) | 428, 480, 1491 |
| Bst1107I | GTATAC | 2 cut(s) | 518, 933 |
| Bst2BI | CACGAG | 1 cut(s) | 339 |
| Bst2UI | CCWGG | 3 cut(s) | 327, 810, 1194 |
| Bst4CI | ACNGT | 4 cut(s) | 200, 613, 623, 1161 |
| Bst6I | CTCTTC | 1 cut(s) | 1275 |
| BstAFI | CTTAAG | 1 cut(s) | 383 |
| BstC8I | GCNNGC | 3 cut(s) | 459, 1080, 1515 |
| BstDEI | CTNAG | 3 cut(s) | 96, 321, 1314 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 968 |
| BstF5I | GGATG | 4 cut(s) | 104, 989, 1448, 1501 |
| BstH2I | RGCGCY | 1 cut(s) | 1546 |
| BstHHI | GCGC | 3 cut(s) | 1268, 1485, 1545 |
| BstKTI | GATC | 5 cut(s) | 295, 689, 711, 1180, 1480 |
| BstMAI | GTCTC | 2 cut(s) | 602, 1277 |
| BstMBI | GATC | 5 cut(s) | 292, 686, 708, 1177, 1477 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 26, 210, 1319, 1382, 1391 |
| BstNI | CCWGG | 3 cut(s) | 327, 810, 1194 |
| BstNSI | RCATGY | 2 cut(s) | 1082, 1517 |
| BstSCI | CCNGG | 5 cut(s) | 304, 325, 808, 872, 1192 |
| BstSFI | CTRYAG | 3 cut(s) | 40, 252, 1140 |
| BstV1I | GCAGC | 3 cut(s) | 26, 355, 692 |
| BstV2I | GAAGAC | 1 cut(s) | 436 |
| BstX2I | RGATCY | 1 cut(s) | 686 |
| BstYI | RGATCY | 1 cut(s) | 686 |
| BstZ17I | GTATAC | 2 cut(s) | 518, 933 |
| BsuI | GTATCC | 1 cut(s) | 312 |
| BsuRI | GGCC | 3 cut(s) | 867, 1125, 1385 |
| BtsCI | GGATG | 4 cut(s) | 104, 989, 1448, 1501 |
| BtsIMutI | CAGTG | 4 cut(s) | 527, 892, 1107, 1302 |
| BveI | ACCTGC | 2 cut(s) | 1259, 1367 |
| Cac8I | GCNNGC | 3 cut(s) | 459, 1080, 1515 |
| CciI | TCATGA | 1 cut(s) | 909 |
| CfoI | GCGC | 3 cut(s) | 1268, 1485, 1545 |
| Cfr13I | GGNCC | 2 cut(s) | 866, 1151 |
| Csp6I | GTAC | 4 cut(s) | 169, 357, 477, 601 |
| CviAII | CATG | 8 cut(s) | 439, 593, 755, 910, 938, 1079, 1387, 1514 |
| CviQI | GTAC | 4 cut(s) | 169, 357, 477, 601 |
| DdeI | CTNAG | 3 cut(s) | 96, 321, 1314 |
| DpnI | GATC | 5 cut(s) | 294, 688, 710, 1179, 1479 |
| DpnII | GATC | 5 cut(s) | 292, 686, 708, 1177, 1477 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 671 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 671 |
| Eam1104I | CTCTTC | 1 cut(s) | 1275 |
| EarI | CTCTTC | 1 cut(s) | 1275 |
| Eco130I | CCWWGG | 3 cut(s) | 428, 480, 1491 |
| Eco24I | GRGCYC | 1 cut(s) | 696 |
| Eco47I | GGWCC | 1 cut(s) | 1151 |
| Eco88I | CYCGRG | 1 cut(s) | 1560 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 968 |
| EcoRI | GAATTC | 1 cut(s) | 485 |
| EcoRII | CCWGG | 3 cut(s) | 325, 808, 1192 |
| EcoT14I | CCWWGG | 3 cut(s) | 428, 480, 1491 |
| EcoT22I | ATGCAT | 1 cut(s) | 733 |
| EcoT38I | GRGCYC | 1 cut(s) | 696 |
| ErhI | CCWWGG | 3 cut(s) | 428, 480, 1491 |
| FaeI | CATG | 8 cut(s) | 442, 596, 758, 913, 941, 1082, 1390, 1517 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 767, 799 |
| FaqI | GGGAC | 2 cut(s) | 1137, 1174 |
| FatI | CATG | 8 cut(s) | 438, 592, 754, 909, 937, 1078, 1386, 1513 |
| FauI | CCCGC | 1 cut(s) | 119 |
| FauNDI | CATATG | 1 cut(s) | 1120 |
| FblI | GTMKAC | 4 cut(s) | 517, 932, 1139, 1425 |
| Fnu4HI | GCNGC | 3 cut(s) | 40, 369, 681 |
| FokI | GGATG | 4 cut(s) | 91, 976, 1435, 1508 |
| FriOI | GRGCYC | 1 cut(s) | 696 |
| Fsp4HI | GCNGC | 3 cut(s) | 40, 369, 681 |
| FspBI | CTAG | 3 cut(s) | 21, 30, 311 |
| FspI | TGCGCA | 1 cut(s) | 1267 |
| GlaI | GCGC | 3 cut(s) | 1267, 1484, 1544 |
| GluI | GCNGC | 3 cut(s) | 40, 369, 681 |
| GsaI | CCCAGC | 1 cut(s) | 367 |
| HaeII | RGCGCY | 1 cut(s) | 1546 |
| HaeIII | GGCC | 3 cut(s) | 867, 1125, 1385 |
| HapII | CCGG | 2 cut(s) | 305, 873 |
| HhaI | GCGC | 3 cut(s) | 1268, 1485, 1545 |
| Hin1II | CATG | 8 cut(s) | 442, 596, 758, 913, 941, 1082, 1390, 1517 |
| Hin6I | GCGC | 3 cut(s) | 1266, 1483, 1543 |
| HinP1I | GCGC | 3 cut(s) | 1266, 1483, 1543 |
| HincII | GTYRAC | 1 cut(s) | 1600 |
| HindII | GTYRAC | 1 cut(s) | 1600 |
| HindIII | AAGCTT | 2 cut(s) | 668, 776 |
| HinfI | GANTC | 7 cut(s) | 193, 272, 378, 433, 648, 751, 982 |
| HpaII | CCGG | 2 cut(s) | 305, 873 |
| HphI | GGTGA | 6 cut(s) | 202, 341, 417, 902, 952, 1019 |
| Hpy166II | GTNNAC | 6 cut(s) | 518, 601, 933, 1140, 1426, 1600 |
| Hpy188I | TCNGA | 8 cut(s) | 97, 277, 691, 743, 802, 820, 860, 1439 |
| Hpy188III | TCNNGA | 6 cut(s) | 51, 311, 784, 910, 1277, 1638 |
| Hpy8I | GTNNAC | 6 cut(s) | 518, 601, 933, 1140, 1426, 1600 |
| Hpy99I | CGWCG | 1 cut(s) | 1001 |
| HpyAV | CCTTC | 6 cut(s) | 39, 141, 1003, 1194, 1325, 1363 |
| HpyCH4III | ACNGT | 4 cut(s) | 200, 613, 623, 1161 |
| HpyCH4IV | ACGT | 2 cut(s) | 142, 999 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 26, 210, 1319, 1382, 1391 |
| HpyF3I | CTNAG | 3 cut(s) | 96, 321, 1314 |
| HpySE526I | ACGT | 2 cut(s) | 142, 999 |
| Hsp92II | CATG | 8 cut(s) | 442, 596, 758, 913, 941, 1082, 1390, 1517 |
| HspAI | GCGC | 3 cut(s) | 1266, 1483, 1543 |
| KpnI | GGTACC | 1 cut(s) | 480 |
| Kzo9I | GATC | 5 cut(s) | 292, 686, 708, 1177, 1477 |
| LmnI | GCTCC | 2 cut(s) | 101, 210 |
| Lsp1109I | GCAGC | 3 cut(s) | 26, 355, 692 |
| LweI | GCATC | 4 cut(s) | 113, 783, 1457, 1486 |
| MaeI | CTAG | 3 cut(s) | 21, 30, 311 |
| MaeII | ACGT | 2 cut(s) | 142, 999 |
| MaeIII | GTNAC | 5 cut(s) | 68, 143, 718, 958, 1460 |
| MalI | GATC | 5 cut(s) | 294, 688, 710, 1179, 1479 |
| MboI | GATC | 5 cut(s) | 292, 686, 708, 1177, 1477 |
| MboII | GAAGA | 6 cut(s) | 436, 836, 1099, 1172, 1253, 1292 |
| MflI | RGATCY | 1 cut(s) | 686 |
| MhlI | GDGCHC | 1 cut(s) | 696 |
| MluCI | AATT | 5 cut(s) | 160, 242, 485, 893, 1337 |
| MlyI | GAGTC | 1 cut(s) | 281 |
| MmeI | TCCRAC | 3 cut(s) | 982, 1435, 1553 |
| Mph1103I | ATGCAT | 1 cut(s) | 733 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1583 |
| MseI | TTAA | 5 cut(s) | 384, 942, 1007, 1098, 1356 |
| MslI | CAYNNNNRTG | 2 cut(s) | 75, 1616 |
| MspA1I | CMGCKG | 1 cut(s) | 683 |
| MspCI | CTTAAG | 1 cut(s) | 383 |
| MspI | CCGG | 2 cut(s) | 305, 873 |
| MspR9I | CCNGG | 5 cut(s) | 306, 327, 810, 874, 1194 |
| Mva1269I | GAATGC | 1 cut(s) | 180 |
| MvaI | CCWGG | 3 cut(s) | 327, 810, 1194 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 26, 210, 1319, 1382, 1391 |
| NciI | CCSGG | 2 cut(s) | 306, 874 |
| NdeI | CATATG | 1 cut(s) | 1120 |
| NdeII | GATC | 5 cut(s) | 292, 686, 708, 1177, 1477 |
| NlaIII | CATG | 8 cut(s) | 442, 596, 758, 913, 941, 1082, 1390, 1517 |
| NlaIV | GGNNCC | 4 cut(s) | 58, 478, 688, 1153 |
| NmuCI | GTSAC | 4 cut(s) | 68, 143, 718, 958 |
| NsbI | TGCGCA | 1 cut(s) | 1267 |
| NsiI | ATGCAT | 1 cut(s) | 733 |
| NspI | RCATGY | 2 cut(s) | 1082, 1517 |
| OliI | CACNNNNGTG | 2 cut(s) | 75, 1616 |
| PaeI | GCATGC | 2 cut(s) | 1082, 1517 |
| PagI | TCATGA | 1 cut(s) | 909 |
| PctI | GAATGC | 1 cut(s) | 180 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1583 |
| PfeI | GAWTC | 6 cut(s) | 193, 378, 433, 648, 751, 982 |
| PkrI | GCNGC | 3 cut(s) | 41, 370, 682 |
| PleI | GAGTC | 1 cut(s) | 280 |
| PpsI | GAGTC | 1 cut(s) | 280 |
| Psp6I | CCWGG | 3 cut(s) | 325, 808, 1192 |
| PspFI | CCCAGC | 1 cut(s) | 363 |
| PspGI | CCWGG | 3 cut(s) | 325, 808, 1192 |
| PspN4I | GGNNCC | 4 cut(s) | 58, 478, 688, 1153 |
| PspPI | GGNCC | 2 cut(s) | 866, 1151 |
| PstI | CTGCAG | 2 cut(s) | 44, 256 |
| PsuI | RGATCY | 1 cut(s) | 686 |
| PvuII | CAGCTG | 1 cut(s) | 683 |
| RsaI | GTAC | 4 cut(s) | 170, 358, 478, 602 |
| RsaNI | GTAC | 4 cut(s) | 169, 357, 477, 601 |
| RseI | CAYNNNNRTG | 2 cut(s) | 75, 1616 |
| SaqAI | TTAA | 5 cut(s) | 384, 942, 1007, 1098, 1356 |
| SatI | GCNGC | 3 cut(s) | 40, 369, 681 |
| Sau3AI | GATC | 5 cut(s) | 292, 686, 708, 1177, 1477 |
| Sau96I | GGNCC | 2 cut(s) | 866, 1151 |
| SchI | GAGTC | 1 cut(s) | 281 |
| ScrFI | CCNGG | 5 cut(s) | 306, 327, 810, 874, 1194 |
| SduI | GDGCHC | 1 cut(s) | 696 |
| SfaNI | GCATC | 4 cut(s) | 113, 783, 1457, 1486 |
| SfcI | CTRYAG | 3 cut(s) | 40, 252, 1140 |
| SinI | GGWCC | 1 cut(s) | 1151 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 75, 1616 |
| SmlI | CTYRAG | 2 cut(s) | 383, 1636 |
| SmoI | CTYRAG | 2 cut(s) | 383, 1636 |
| SphI | GCATGC | 2 cut(s) | 1082, 1517 |
| Sse9I | AATT | 5 cut(s) | 160, 242, 485, 893, 1337 |
| SsiI | CCGC | 1 cut(s) | 112 |
| SspI | AATATT | 1 cut(s) | 119 |
| SspMI | CTAG | 3 cut(s) | 21, 30, 311 |
| StyD4I | CCNGG | 5 cut(s) | 304, 325, 808, 872, 1192 |
| StyI | CCWWGG | 3 cut(s) | 428, 480, 1491 |
| TaaI | ACNGT | 4 cut(s) | 200, 613, 623, 1161 |
| TaiI | ACGT | 2 cut(s) | 145, 1002 |
| TaqI | TCGA | 2 cut(s) | 376, 996 |
| TasI | AATT | 5 cut(s) | 160, 242, 485, 893, 1337 |
| TatI | WGTACW | 1 cut(s) | 600 |
| TfiI | GAWTC | 6 cut(s) | 193, 378, 433, 648, 751, 982 |
| Tru1I | TTAA | 5 cut(s) | 384, 942, 1007, 1098, 1356 |
| Tru9I | TTAA | 5 cut(s) | 384, 942, 1007, 1098, 1356 |
| TscAI | CASTG | 4 cut(s) | 534, 892, 1114, 1302 |
| TseFI | GTSAC | 4 cut(s) | 68, 143, 718, 958 |
| TseI | GCWGC | 3 cut(s) | 39, 368, 680 |
| Tsp45I | GTSAC | 4 cut(s) | 68, 143, 718, 958 |
| TspDTI | ATGAA | 4 cut(s) | 651, 895, 926, 1525 |
| TspGWI | ACGGA | 3 cut(s) | 479, 911, 1441 |
| TspRI | CASTG | 4 cut(s) | 534, 892, 1114, 1302 |
| Vha464I | CTTAAG | 1 cut(s) | 383 |
| VpaK11BI | GGWCC | 1 cut(s) | 1151 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 968 |
| XapI | RAATTY | 2 cut(s) | 485, 1337 |
| XbaI | TCTAGA | 1 cut(s) | 310 |
| XceI | RCATGY | 2 cut(s) | 1082, 1517 |
| XmiI | GTMKAC | 4 cut(s) | 517, 932, 1139, 1425 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1583 |
| XspI | CTAG | 3 cut(s) | 21, 30, 311 |
| Zsp2I | ATGCAT | 1 cut(s) | 733 |