Rroxscaffold_3G00236200

specification of plant organ axis polarity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000066
Physical Location & Seq
Reverse (-)
23377163 .. 23379961
2799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236200.1

Sequence Viewer

Length: 2286 bp
ATGGCGTTGCGACTCTCATTGGTAGCAGTTCTACTCCTGTTATTGGTGGCTAGTACTACTACAACAACAGCAGCTGCTGCTCAAGCCCTGCCTGGTTGCTCAGACAAGTGCGGCAATCTCACAATTCCATATCCATTTGGCATGGAGGAGGGTTGTTACCTGCGAGAAGAATTCTTTATCAATTGTAGCAATACCACCCAACCACCAACAGCATATTTAAGAGTCAGCAATATCATTGTTACTAACATTTCCCTTGATGAAGGTGAGTTGCAAATATCCAACAACGTGGCTGAAGCTTGCTATAACGAGCAGGGCAATGTGACATCCAGCAAGGATTATTCGCTCGGCCTGCCCCTTCCTTATACGATATCCGATACCAAAAACAAGCTCTACACCGTTGGTTGTGACACTTATTCAATTTTACAAGGCTTCCTAGGGGAAGATGAGTTCGATACGGGGTGCATTTCCATATGCAACAGGCTTGACATTGTTGATCAATATTCTTGCTCTGGCGCTGGGTGTTGCCAGACTAACATCCCCAGAGGGTTGAAAAATACGACGGTGACGTTGGATACCATCAACAGTCATAAGGATATATGGGACTTTAACCCCTGCAGCTACGCCTTCATTGCAGAGCAAGGACAGTTCAATTTCTCGGCTGCAAGTTTAAAGAAACAGGACAACAACTCCTGGCTTCCAGCGGTTCTTAATTGGGCTATTGGGAATGACACAGACTCCTGTGATGAAGCTCAAAAGAGGAAGGATTTCGCTTGCAAGGCTAATAGCAGGTGCGCCAACGGGCCTATCAACGGGTCTGTAGGTTACTTGTGCCAATGCTTACCCGGTTATGAAGGAAACCCCTACCATCCAGATGGTTGCCAAGATATTGATGAGTGCACGGCTTTAAACCCCTGCAATGGACTGAATGAAGTATGTGTAAATTCACTAGGGAATTACTCTTGTTTATGTCCCAATGGCTACAAAAACAATGGCCCGAATGGAAAGTGCATCAAAGACAATTCCAGCGACCGTCTCCAGCTCATAATTCTTTCATTGGGAATTTCTGTAGGCCTATTTGTGATTTTATTAGTTGGAAGTTTATGGATGTATTGGGGACTGAAGAAAAGGAAGTTCATAAAACTCAAAGAGAAGTACTTTACAGAAAATGGTGGCTTATTGTTAAAACAAAAACTCACTAGTCAAGGAGGATCTGTTGAGACAACCAAACTATTTACTGCAGAAGAACTTGAGAAGGCCACAAACAATTACCATGAAAGTAGAATCCTTGGTGAAGGAGGGTATGGAACAGTTTACAGAGGCATATTACCAGATAACCAAGTGGTTGCAATAAAAAAGTCCAAAGTTGGTGCCCTGACTCAAACTGATCAGTTTGTTAATGAGGTGATTGTTCTTTCTCAAGTCAACCATAGAAATGTAGTAAGGCTATTAGGTTGTTGTTTAGAGACAGAAGTCCCTTTACTAGTATACGAGTTCATCACCCAGGGCACTCTCTTTGAGCACATTCACAAGAAAAAGGGTAAAGGGTCATCACTTTCGTGGGAACTCCGATTGAAGATAGCATCAGAAACTGCAGGAGCACTAGCATACTTGCACTCCTCCACTTCCACACCAATCATACACCGAGATGTGAAAACAATGAATATACTATTAGATGACAATTACACAGCCAAAGTGTCAGATTTTGGAGCTTCACGTTTCATTCCTATTGATCAAACTCAACTAGCAACAATGGTGCAAGGCACATTTGGATACTTGGACCCTGGATACTTCCATTCAAATCAACTAACAGAAAAGAGTGACGTCTATAGCTTTGGAGTGGTTCTAACAGAGCTACTCACAAGTAAAGTGGCATTTTCTTTTGCAAGGCCTGAGGCAGAGAGATGCCTTGCACACTTTTTTGTTTGTTCGGTGGAAGATGGTCACTTGAACCAAATTCTATATGATGGCATTATTAATGAAGGAGATATTGACCAGAGAGTAATAGAAAATGTGGCCCATCTTGCAAGAAAATGTTTGAGGGTAAAAGGGGAGGAAAGGCCTACCATGAGAGAAGTAGCCATGGAGCTAGAAGGAATGATTATGACAAAGCATCCACGGGGTTCTGCAGATCATTACTTCCCAGAAGAGACTACGCACTTGCTCGGATCACCTAACACTTCCAAGGATTATGTTGTGAATTTTGATGGTGATGGTGGTCCTGGTACAACCAGTGGGTGTGACAGCATGCAAATCGAAATGTTAATGTCATATGCTGATGGGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase_Tyr

Protein Analysis

761

Amino Acids

83.66

Weight (kDa)

5.26

Isoelectric Point (pI)

27.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 33 - 93 1.7e-10 Wall-associated receptor kinase galacturonan-binding
EGF_CA PF07645 295 - 336 1.9e-08 Calcium-binding EGF domain
Pkinase PF00069 423 - 692 4.8e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 426 - 696 1.2e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 777
AatII GACGTC 1 cut(s) 1824
Acc36I ACCTGC 2 cut(s) 168, 777
AccB1I GGYRCC 1 cut(s) 1367
AccI GTMKAC 1 cut(s) 1485
AciI CCGC 2 cut(s) 111, 701
AclWI GGATC 2 cut(s) 1216, 2173
AcsI RAATTY 5 cut(s) 170, 940, 1059, 1953, 2197
AcuI CTGAAG 2 cut(s) 312, 1139
AcyI GRCGYC 1 cut(s) 1821
AfaI GTAC 3 cut(s) 55, 1154, 2224
AfiI CCNNNNNNNGG 3 cut(s) 43, 809, 917
AgsI TTSAA 6 cut(s) 417, 550, 649, 1573, 1797, 1948
AhlI ACTAGT 2 cut(s) 1196, 1480
AjnI CCWGG 5 cut(s) 91, 689, 1500, 1780, 2218
AleI CACNNNNGTG 1 cut(s) 1555
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
Alw21I GWGCWC 3 cut(s) 899, 1521, 1600
Alw26I GTCTC 4 cut(s) 1037, 1211, 1457, 2141
Alw44I GTGCAC 1 cut(s) 895
AlwI GGATC 2 cut(s) 1216, 2173
AlwNI CAGNNNCTG 3 cut(s) 74, 77, 1589
AoxI GGCC 8 cut(s) 346, 800, 991, 1069, 1254, 1886, 2013, 2057
ApaLI GTGCAC 1 cut(s) 895
ApeKI GCWGC 5 cut(s) 71, 74, 77, 615, 659
ApoI RAATTY 5 cut(s) 170, 940, 1059, 1953, 2197
AseI ATTAAT 1 cut(s) 1974
Asp700I GAANNNNTTC 1 cut(s) 764
AspA2I CCTAGG 1 cut(s) 433
AspLEI GCGC 2 cut(s) 515, 794
AspS9I GGNCC 5 cut(s) 800, 992, 1777, 2014, 2216
AsuC2I CCSGG 1 cut(s) 843
AsuHPI GGTGA 7 cut(s) 275, 574, 1301, 1414, 1489, 2160, 2219
AvaII GGWCC 2 cut(s) 1777, 2216
AvrII CCTAGG 1 cut(s) 433
AxyI CCTNAGG 1 cut(s) 1890
BaeGI GKGCMC 3 cut(s) 899, 1372, 1508
BanI GGYRCC 1 cut(s) 1367
BarI GAAGNNNNNNTAC 2 cut(s) 1461, 1493
Bbv12I GWGCWC 3 cut(s) 899, 1521, 1600
BbvI GCAGC 5 cut(s) 61, 64, 83, 627, 646
BccI CCATC 9 cut(s) 584, 866, 873, 1931, 1958, 2025, 2198, 2204, 2270
BceAI ACGGC 1 cut(s) 915
BcgI CGANNNNNNTGC 2 cut(s) 2233, 2267
BciT130I CCWGG 5 cut(s) 93, 691, 1502, 1782, 2220
BciVI GTATCC 3 cut(s) 565, 1763, 1778
BclI TGATCA 3 cut(s) 493, 1384, 1729
BcnI CCSGG 1 cut(s) 843
BcoDI GTCTC 4 cut(s) 1037, 1211, 1457, 2141
BcuI ACTAGT 2 cut(s) 1196, 1480
BfaI CTAG 8 cut(s) 51, 434, 947, 1197, 1481, 1601, 1742, 2087
BfmI CTRYAG 7 cut(s) 613, 816, 1065, 1236, 1590, 1825, 2124
BfoI RGCGCY 1 cut(s) 516
BfuAI ACCTGC 2 cut(s) 168, 777
BfuI GTATCC 3 cut(s) 565, 1763, 1778
BisI GCNGC 6 cut(s) 72, 75, 78, 112, 616, 660
BlnI CCTAGG 1 cut(s) 433
BlsI GCNGC 6 cut(s) 73, 76, 79, 113, 617, 661
BmcAI AGTACT 2 cut(s) 55, 1154
Bme1390I CCNGG 6 cut(s) 93, 691, 843, 1502, 1782, 2220
Bme18I GGWCC 2 cut(s) 1777, 2216
BmgT120I GGNCC 5 cut(s) 800, 992, 1777, 2014, 2216
BmiI GGNNCC 2 cut(s) 1369, 1779
BmrFI CCNGG 6 cut(s) 93, 691, 843, 1502, 1782, 2220
BmsI GCATC 4 cut(s) 1017, 1589, 1892, 2119
BoxI GACNNNNGTC 1 cut(s) 1469
BpmI CTGGAG 1 cut(s) 1019
BpuEI CTTGAG 3 cut(s) 66, 1268, 1401
BpuMI CCSGG 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 1821
BsaJI CCNNGG 8 cut(s) 433, 1285, 1500, 1501, 1780, 2079, 2114, 2181
BsaXI ACNNNNNCTCC 8 cut(s) 671, 701, 719, 749, 1197, 1227, 1598, 1628
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 809, 917
Bse1I ACTGG 1 cut(s) 2229
Bse21I CCTNAGG 1 cut(s) 1890
Bse3DI GCAATG 3 cut(s) 322, 627, 922
BseBI CCWGG 5 cut(s) 93, 691, 1502, 1782, 2220
BseDI CCNNGG 8 cut(s) 433, 1285, 1500, 1501, 1780, 2079, 2114, 2181
BseGI GGATG 5 cut(s) 323, 534, 865, 1110, 2110
BseLI CCNNNNNNNGG 3 cut(s) 43, 809, 917
BseMI GCAATG 3 cut(s) 322, 627, 922
BseMII CTCAG 2 cut(s) 114, 1881
BseNI ACTGG 1 cut(s) 2229
BseRI GAGGAG 2 cut(s) 161, 1606
BseSI GKGCMC 3 cut(s) 899, 1372, 1508
BseXI GCAGC 5 cut(s) 61, 64, 83, 627, 646
BseYI CCCAGC 1 cut(s) 515
Bsh1285I CGRYCG 1 cut(s) 1030
BshFI GGCC 8 cut(s) 348, 802, 993, 1071, 1256, 1888, 2015, 2059
BshNI GGYRCC 1 cut(s) 1367
BsiEI CGRYCG 1 cut(s) 1030
BsiHKAI GWGCWC 3 cut(s) 899, 1521, 1600
BsiSI CCGG 1 cut(s) 843
BslFI GGGAC 4 cut(s) 614, 954, 1128, 1457
BslI CCNNNNNNNGG 3 cut(s) 43, 809, 917
BsmAI GTCTC 4 cut(s) 1037, 1211, 1457, 2141
BsmBI CGTCTC 1 cut(s) 1037
BsmFI GGGAC 4 cut(s) 614, 954, 1128, 1457
BsnI GGCC 8 cut(s) 348, 802, 993, 1071, 1256, 1888, 2015, 2059
Bsp1286I GDGCHC 5 cut(s) 899, 1372, 1508, 1521, 1600
Bsp143I GATC 6 cut(s) 493, 1208, 1384, 1729, 2128, 2165
Bsp19I CCATGG 1 cut(s) 2079
BspACI CCGC 2 cut(s) 111, 701
BspANI GGCC 8 cut(s) 348, 802, 993, 1071, 1256, 1888, 2015, 2059
BspCNI CTCAG 2 cut(s) 113, 1882
BspLI GGNNCC 2 cut(s) 1369, 1779
BspMAI CTGCAG 4 cut(s) 617, 1240, 1594, 2128
BspMI ACCTGC 2 cut(s) 168, 777
BspPI GGATC 2 cut(s) 1216, 2173
BspT107I GGYRCC 1 cut(s) 1367
BsrDI GCAATG 3 cut(s) 322, 627, 922
BsrI ACTGG 1 cut(s) 2229
BssECI CCNNGG 8 cut(s) 433, 1285, 1500, 1501, 1780, 2079, 2114, 2181
BssMI GATC 6 cut(s) 493, 1208, 1384, 1729, 2128, 2165
BssNAI GTATAC 1 cut(s) 1486
BssNI GRCGYC 1 cut(s) 1821
BssT1I CCWWGG 4 cut(s) 433, 1285, 2079, 2181
Bst1107I GTATAC 1 cut(s) 1486
Bst2UI CCWGG 5 cut(s) 93, 691, 1502, 1782, 2220
Bst4CI ACNGT 6 cut(s) 397, 562, 584, 645, 1031, 1309
Bst6I CTCTTC 1 cut(s) 2139
BstACI GRCGYC 1 cut(s) 1821
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 4 cut(s) 298, 350, 772, 2246
BstDEI CTNAG 2 cut(s) 100, 1890
BstDSI CCRYGG 2 cut(s) 2079, 2114
BstF5I GGATG 5 cut(s) 323, 534, 865, 1110, 2110
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 2 cut(s) 515, 794
BstKTI GATC 6 cut(s) 496, 1211, 1387, 1732, 2131, 2168
BstMAI GTCTC 4 cut(s) 1037, 1211, 1457, 2141
BstMBI GATC 6 cut(s) 493, 1208, 1384, 1729, 2128, 2165
BstMCI CGRYCG 1 cut(s) 1030
BstMWI GCNNNNNNNGC 6 cut(s) 77, 83, 349, 629, 776, 2021
BstNI CCWGG 5 cut(s) 93, 691, 1502, 1782, 2220
BstNSI RCATGY 1 cut(s) 2248
BstPAI GACNNNNGTC 1 cut(s) 1469
BstSCI CCNGG 6 cut(s) 91, 689, 841, 1500, 1780, 2218
BstSFI CTRYAG 7 cut(s) 613, 816, 1065, 1236, 1590, 1825, 2124
BstSLI GKGCMC 3 cut(s) 899, 1372, 1508
BstV1I GCAGC 5 cut(s) 61, 64, 83, 627, 646
BstX2I RGATCY 1 cut(s) 1208
BstXI CCANNNNNNTGG 2 cut(s) 286, 872
BstYI RGATCY 1 cut(s) 1208
BstZ17I GTATAC 1 cut(s) 1486
Bsu36I CCTNAGG 1 cut(s) 1890
BsuI GTATCC 3 cut(s) 565, 1763, 1778
BsuRI GGCC 8 cut(s) 348, 802, 993, 1071, 1256, 1888, 2015, 2059
BtgI CCRYGG 2 cut(s) 2079, 2114
BtsCI GGATG 5 cut(s) 323, 534, 865, 1110, 2110
BtsIMutI CAGTG 1 cut(s) 2236
BveI ACCTGC 2 cut(s) 168, 777
Cac8I GCNNGC 4 cut(s) 298, 350, 772, 2246
CaiI CAGNNNCTG 3 cut(s) 74, 77, 1589
CfoI GCGC 2 cut(s) 515, 794
Cfr13I GGNCC 5 cut(s) 800, 992, 1777, 2014, 2216
Csp6I GTAC 3 cut(s) 54, 1153, 2223
CspCI CAANNNNNGTGG 2 cut(s) 1848, 1883
CviAII CATG 5 cut(s) 142, 1271, 2065, 2080, 2245
CviQI GTAC 3 cut(s) 54, 1153, 2223
DdeI CTNAG 2 cut(s) 100, 1890
DpnI GATC 6 cut(s) 495, 1210, 1386, 1731, 2130, 2167
DpnII GATC 6 cut(s) 493, 1208, 1384, 1729, 2128, 2165
DraI TTTAAA 2 cut(s) 669, 906
Eam1104I CTCTTC 1 cut(s) 2139
EarI CTCTTC 1 cut(s) 2139
Eco130I CCWWGG 4 cut(s) 433, 1285, 2079, 2181
Eco147I AGGCCT 3 cut(s) 1071, 1888, 2059
Eco32I GATATC 1 cut(s) 369
Eco47I GGWCC 2 cut(s) 1777, 2216
Eco57I CTGAAG 2 cut(s) 312, 1139
Eco81I CCTNAGG 1 cut(s) 1890
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 5 cut(s) 91, 689, 1500, 1780, 2218
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 4 cut(s) 433, 1285, 2079, 2181
ErhI CCWWGG 4 cut(s) 433, 1285, 2079, 2181
Esp3I CGTCTC 1 cut(s) 1037
FaeI CATG 5 cut(s) 145, 1274, 2068, 2083, 2248
FaqI GGGAC 4 cut(s) 614, 954, 1128, 1457
FatI CATG 5 cut(s) 141, 1270, 2064, 2079, 2244
FauNDI CATATG 2 cut(s) 470, 2269
FbaI TGATCA 3 cut(s) 493, 1384, 1729
FblI GTMKAC 1 cut(s) 1485
Fnu4HI GCNGC 6 cut(s) 72, 75, 78, 112, 616, 660
FokI GGATG 5 cut(s) 310, 521, 852, 1117, 2097
Fsp4HI GCNGC 6 cut(s) 72, 75, 78, 112, 616, 660
FspBI CTAG 8 cut(s) 51, 434, 947, 1197, 1481, 1601, 1742, 2087
GlaI GCGC 2 cut(s) 514, 793
GluI GCNGC 6 cut(s) 72, 75, 78, 112, 616, 660
GsaI CCCAGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 1019
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 8 cut(s) 348, 802, 993, 1071, 1256, 1888, 2015, 2059
HapII CCGG 1 cut(s) 843
HhaI GCGC 2 cut(s) 515, 794
Hin1I GRCGYC 1 cut(s) 1821
Hin1II CATG 5 cut(s) 145, 1274, 2068, 2083, 2248
Hin6I GCGC 2 cut(s) 513, 792
HinP1I GCGC 2 cut(s) 513, 792
HincII GTYRAC 1 cut(s) 1423
HindII GTYRAC 1 cut(s) 1423
HindIII AAGCTT 1 cut(s) 294
HinfI GANTC 5 cut(s) 12, 222, 734, 1281, 1375
HpaII CCGG 1 cut(s) 843
HphI GGTGA 7 cut(s) 275, 574, 1301, 1414, 1489, 2160, 2219
Hpy166II GTNNAC 4 cut(s) 897, 1312, 1423, 1486
Hpy188I TCNGA 6 cut(s) 103, 373, 1568, 1585, 1699, 2165
Hpy188III TCNNGA 1 cut(s) 869
Hpy8I GTNNAC 4 cut(s) 897, 1312, 1423, 1486
Hpy99I CGWCG 1 cut(s) 562
HpyAV CCTTC 9 cut(s) 254, 365, 634, 754, 845, 1246, 1286, 1973, 2084
HpyCH4III ACNGT 6 cut(s) 397, 562, 584, 645, 1031, 1309
HpyCH4IV ACGT 4 cut(s) 285, 566, 1714, 1821
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 83, 349, 629, 776, 2021
HpyF3I CTNAG 2 cut(s) 100, 1890
HpySE526I ACGT 4 cut(s) 285, 566, 1714, 1821
Hsp92I GRCGYC 1 cut(s) 1821
Hsp92II CATG 5 cut(s) 145, 1274, 2068, 2083, 2248
HspAI GCGC 2 cut(s) 513, 792
Ksp22I TGATCA 3 cut(s) 493, 1384, 1729
Kzo9I GATC 6 cut(s) 493, 1208, 1384, 1729, 2128, 2165
LmnI GCTCC 3 cut(s) 1595, 1706, 2083
Lsp1109I GCAGC 5 cut(s) 61, 64, 83, 627, 646
LweI GCATC 4 cut(s) 1017, 1589, 1892, 2119
MaeI CTAG 8 cut(s) 51, 434, 947, 1197, 1481, 1601, 1742, 2087
MaeII ACGT 4 cut(s) 285, 566, 1714, 1821
MaeIII GTNAC 9 cut(s) 155, 238, 319, 404, 562, 821, 1817, 1940, 2237
MalI GATC 6 cut(s) 495, 1210, 1386, 1731, 2130, 2167
MboI GATC 6 cut(s) 493, 1208, 1384, 1729, 2128, 2165
MboII GAAGA 7 cut(s) 179, 452, 1132, 1253, 1585, 1946, 2156
MfeI CAATTG 1 cut(s) 181
MflI RGATCY 1 cut(s) 1208
MhlI GDGCHC 5 cut(s) 899, 1372, 1508, 1521, 1600
MlyI GAGTC 4 cut(s) 6, 231, 728, 1369
MmeI TCCRAC 3 cut(s) 303, 549, 1072
MroXI GAANNNNTTC 1 cut(s) 764
MseI TTAA 9 cut(s) 218, 606, 668, 708, 905, 1181, 1395, 1974, 2261
MslI CAYNNNNRTG 4 cut(s) 870, 1431, 1555, 1644
MspA1I CMGCKG 2 cut(s) 74, 701
MspI CCGG 1 cut(s) 843
MspR9I CCNGG 6 cut(s) 93, 691, 843, 1502, 1782, 2220
MunI CAATTG 1 cut(s) 181
MvaI CCWGG 5 cut(s) 93, 691, 1502, 1782, 2220
MwoI GCNNNNNNNGC 6 cut(s) 77, 83, 349, 629, 776, 2021
NciI CCSGG 1 cut(s) 843
NcoI CCATGG 1 cut(s) 2079
NdeI CATATG 2 cut(s) 470, 2269
NdeII GATC 6 cut(s) 493, 1208, 1384, 1729, 2128, 2165
NlaIII CATG 5 cut(s) 145, 1274, 2068, 2083, 2248
NlaIV GGNNCC 2 cut(s) 1369, 1779
NmeAIII GCCGAG 2 cut(s) 324, 635
NmuCI GTSAC 6 cut(s) 319, 404, 562, 1817, 1940, 2237
NspI RCATGY 1 cut(s) 2248
OliI CACNNNNGTG 1 cut(s) 1555
PaeI GCATGC 1 cut(s) 2248
PaqCI CACCTGC 1 cut(s) 777
PasI CCCWGGG 1 cut(s) 1501
PceI AGGCCT 3 cut(s) 1071, 1888, 2059
PcsI WCGNNNNNNNCGW 1 cut(s) 563
PdmI GAANNNNTTC 1 cut(s) 764
PfeI GAWTC 1 cut(s) 1281
PkrI GCNGC 6 cut(s) 73, 76, 79, 113, 617, 661
PleI GAGTC 4 cut(s) 6, 230, 728, 1369
PpsI GAGTC 4 cut(s) 6, 230, 728, 1369
PshAI GACNNNNGTC 1 cut(s) 1469
PshBI ATTAAT 1 cut(s) 1974
Psp6I CCWGG 5 cut(s) 91, 689, 1500, 1780, 2218
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 5 cut(s) 91, 689, 1500, 1780, 2218
PspN4I GGNNCC 2 cut(s) 1369, 1779
PspPI GGNCC 5 cut(s) 800, 992, 1777, 2014, 2216
PstI CTGCAG 4 cut(s) 617, 1240, 1594, 2128
PstNI CAGNNNCTG 3 cut(s) 74, 77, 1589
PsuI RGATCY 1 cut(s) 1208
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 3 cut(s) 55, 1154, 2224
RsaNI GTAC 3 cut(s) 54, 1153, 2223
RseI CAYNNNNRTG 4 cut(s) 870, 1431, 1555, 1644
SaqAI TTAA 9 cut(s) 218, 606, 668, 708, 905, 1181, 1395, 1974, 2261
SatI GCNGC 6 cut(s) 72, 75, 78, 112, 616, 660
Sau3AI GATC 6 cut(s) 493, 1208, 1384, 1729, 2128, 2165
Sau96I GGNCC 5 cut(s) 800, 992, 1777, 2014, 2216
ScaI AGTACT 2 cut(s) 55, 1154
SchI GAGTC 4 cut(s) 6, 231, 728, 1369
ScrFI CCNGG 6 cut(s) 93, 691, 843, 1502, 1782, 2220
SduI GDGCHC 5 cut(s) 899, 1372, 1508, 1521, 1600
SfaNI GCATC 4 cut(s) 1017, 1589, 1892, 2119
SfcI CTRYAG 7 cut(s) 613, 816, 1065, 1236, 1590, 1825, 2124
SinI GGWCC 2 cut(s) 1777, 2216
SmiMI CAYNNNNRTG 4 cut(s) 870, 1431, 1555, 1644
SmlI CTYRAG 3 cut(s) 81, 1247, 1416
SmoI CTYRAG 3 cut(s) 81, 1247, 1416
SpeI ACTAGT 2 cut(s) 1196, 1480
SphI GCATGC 1 cut(s) 2248
SseBI AGGCCT 3 cut(s) 1071, 1888, 2059
SsiI CCGC 2 cut(s) 111, 701
SspI AATATT 1 cut(s) 500
SspMI CTAG 8 cut(s) 51, 434, 947, 1197, 1481, 1601, 1742, 2087
StuI AGGCCT 3 cut(s) 1071, 1888, 2059
StyD4I CCNGG 6 cut(s) 91, 689, 841, 1500, 1780, 2218
StyI CCWWGG 4 cut(s) 433, 1285, 2079, 2181
TaaI ACNGT 6 cut(s) 397, 562, 584, 645, 1031, 1309
TaiI ACGT 4 cut(s) 288, 569, 1717, 1824
TaqI TCGA 2 cut(s) 450, 2253
TatI WGTACW 2 cut(s) 53, 1152
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 1 cut(s) 1281
Tru1I TTAA 9 cut(s) 218, 606, 668, 708, 905, 1181, 1395, 1974, 2261
Tru9I TTAA 9 cut(s) 218, 606, 668, 708, 905, 1181, 1395, 1974, 2261
TscAI CASTG 1 cut(s) 2236
TseFI GTSAC 6 cut(s) 319, 404, 562, 1817, 1940, 2237
TseI GCWGC 5 cut(s) 71, 74, 77, 615, 659
Tsp45I GTSAC 6 cut(s) 319, 404, 562, 1817, 1940, 2237
TspRI CASTG 1 cut(s) 2236
VneI GTGCAC 1 cut(s) 895
VpaK11BI GGWCC 2 cut(s) 1777, 2216
VspI ATTAAT 1 cut(s) 1974
XapI RAATTY 5 cut(s) 170, 940, 1059, 1953, 2197
XceI RCATGY 1 cut(s) 2248
XmaJI CCTAGG 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 1485
XmnI GAANNNNTTC 1 cut(s) 764
XspI CTAG 8 cut(s) 51, 434, 947, 1197, 1481, 1601, 1742, 2087
ZraI GACGTC 1 cut(s) 1822
ZrmI AGTACT 2 cut(s) 55, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.