Wall-associated receptor kinase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| GUB_WAK_bind | PF13947 | 45 - 109 | 4.2e-09 | Wall-associated receptor kinase galacturonan-binding |
| EGF_CA | PF07645 | 310 - 346 | 9e-06 | Calcium-binding EGF domain |
| Pkinase | PF00069 | 436 - 702 | 3.9e-49 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 439 - 706 | 5.4e-48 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 997 |
| AatII | GACGTC | 1 cut(s) | 2283 |
| Acc36I | ACCTGC | 1 cut(s) | 997 |
| AccI | GTMKAC | 2 cut(s) | 1350, 1360 |
| AccII | CGCG | 1 cut(s) | 1964 |
| AccIII | TCCGGA | 1 cut(s) | 1026 |
| AclWI | GGATC | 5 cut(s) | 398, 1657, 1760, 1917, 2127 |
| AcoI | YGGCCR | 5 cut(s) | 634, 945, 1965, 2043, 2142 |
| AcsI | RAATTY | 4 cut(s) | 982, 1086, 1131, 2020 |
| AcuI | CTGAAG | 1 cut(s) | 1235 |
| AcyI | GRCGYC | 3 cut(s) | 357, 564, 2280 |
| AfaI | GTAC | 5 cut(s) | 266, 756, 1190, 1284, 1808 |
| AfeI | AGCGCT | 1 cut(s) | 2215 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 917 |
| AflII | CTTAAG | 1 cut(s) | 1286 |
| AjnI | CCWGG | 3 cut(s) | 738, 892, 2152 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1076, 1108 |
| Alw21I | GWGCWC | 4 cut(s) | 527, 944, 1560, 1636 |
| Alw26I | GTCTC | 5 cut(s) | 43, 1153, 1496, 2073, 2169 |
| Alw44I | GTGCAC | 2 cut(s) | 523, 1632 |
| AlwI | GGATC | 5 cut(s) | 398, 1657, 1760, 1917, 2127 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1625 |
| Aor13HI | TCCGGA | 1 cut(s) | 1026 |
| Aor51HI | AGCGCT | 1 cut(s) | 2215 |
| AoxI | GGCC | 9 cut(s) | 3, 634, 691, 945, 1207, 1965, 2043, 2087, 2142 |
| ApaLI | GTGCAC | 2 cut(s) | 523, 1632 |
| ApeKI | GCWGC | 2 cut(s) | 56, 89 |
| ApoI | RAATTY | 4 cut(s) | 982, 1086, 1131, 2020 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1248, 1824 |
| AspLEI | GCGC | 1 cut(s) | 2216 |
| AspS9I | GGNCC | 2 cut(s) | 1037, 1208 |
| AsuC2I | CCSGG | 1 cut(s) | 287 |
| AvaII | GGWCC | 1 cut(s) | 1037 |
| BaeGI | GKGCMC | 2 cut(s) | 527, 1636 |
| BalI | TGGCCA | 2 cut(s) | 2045, 2144 |
| BbsI | GAAGAC | 1 cut(s) | 2199 |
| Bbv12I | GWGCWC | 4 cut(s) | 527, 944, 1560, 1636 |
| BbvI | GCAGC | 2 cut(s) | 68, 101 |
| BccI | CCATC | 6 cut(s) | 265, 425, 683, 1028, 2009, 2318 |
| BceAI | ACGGC | 3 cut(s) | 202, 431, 649 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 547, 581, 1713, 1747 |
| BciT130I | CCWGG | 3 cut(s) | 740, 894, 2154 |
| BclI | TGATCA | 1 cut(s) | 94 |
| BcnI | CCSGG | 1 cut(s) | 287 |
| BcoDI | GTCTC | 5 cut(s) | 43, 1153, 1496, 2073, 2169 |
| BfaI | CTAG | 2 cut(s) | 1220, 1706 |
| BfmI | CTRYAG | 2 cut(s) | 1275, 1785 |
| BfoI | RGCGCY | 1 cut(s) | 2217 |
| BfrI | CTTAAG | 1 cut(s) | 1286 |
| BfuAI | ACCTGC | 1 cut(s) | 997 |
| BisI | GCNGC | 6 cut(s) | 57, 90, 865, 1207, 1617, 1965 |
| BlsI | GCNGC | 6 cut(s) | 58, 91, 866, 1208, 1618, 1966 |
| BmcAI | AGTACT | 2 cut(s) | 1190, 1284 |
| Bme1390I | CCNGG | 4 cut(s) | 287, 740, 894, 2154 |
| Bme18I | GGWCC | 1 cut(s) | 1037 |
| BmgT120I | GGNCC | 2 cut(s) | 1037, 1208 |
| BmiI | GGNNCC | 2 cut(s) | 1025, 1758 |
| BmrFI | CCNGG | 4 cut(s) | 287, 740, 894, 2154 |
| BmrI | ACTGGG | 1 cut(s) | 772 |
| BmsI | GCATC | 3 cut(s) | 186, 237, 1186 |
| BmuI | ACTGGG | 1 cut(s) | 772 |
| BpiI | GAAGAC | 1 cut(s) | 2199 |
| BpmI | CTGGAG | 1 cut(s) | 406 |
| BpuEI | CTTGAG | 4 cut(s) | 102, 567, 1349, 2219 |
| BpuMI | CCSGG | 1 cut(s) | 287 |
| Bsa29I | ATCGAT | 1 cut(s) | 1661 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1667, 1770 |
| BsaHI | GRCGYC | 3 cut(s) | 357, 564, 2280 |
| BsaJI | CCNNGG | 7 cut(s) | 6, 361, 750, 1040, 1926, 1962, 2153 |
| BsaWI | WCCGGW | 1 cut(s) | 1026 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 238, 268, 1021, 1051 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 917 |
| Bse3DI | GCAATG | 2 cut(s) | 874, 1546 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1667, 1770 |
| BseAI | TCCGGA | 1 cut(s) | 1026 |
| BseBI | CCWGG | 3 cut(s) | 740, 894, 2154 |
| BseCI | ATCGAT | 1 cut(s) | 1661 |
| BseDI | CCNNGG | 7 cut(s) | 6, 361, 750, 1040, 1926, 1962, 2153 |
| BseGI | GGATG | 4 cut(s) | 27, 735, 1375, 2020 |
| BseJI | GATNNNNATC | 2 cut(s) | 1667, 1770 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 917 |
| BseMI | GCAATG | 2 cut(s) | 874, 1546 |
| BseSI | GKGCMC | 2 cut(s) | 527, 1636 |
| BseX3I | CGGCCG | 1 cut(s) | 945 |
| BseXI | GCAGC | 2 cut(s) | 68, 101 |
| Bsh1236I | CGCG | 1 cut(s) | 1964 |
| Bsh1285I | CGRYCG | 2 cut(s) | 142, 948 |
| BshFI | GGCC | 9 cut(s) | 5, 636, 693, 947, 1209, 1967, 2045, 2089, 2144 |
| BshVI | ATCGAT | 1 cut(s) | 1661 |
| BsiEI | CGRYCG | 2 cut(s) | 142, 948 |
| BsiHKAI | GWGCWC | 4 cut(s) | 527, 944, 1560, 1636 |
| BsiSI | CCGG | 3 cut(s) | 206, 286, 1027 |
| BslFI | GGGAC | 3 cut(s) | 572, 779, 1810 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 917 |
| BsmAI | GTCTC | 5 cut(s) | 43, 1153, 1496, 2073, 2169 |
| BsmBI | CGTCTC | 2 cut(s) | 1153, 2073 |
| BsmFI | GGGAC | 3 cut(s) | 572, 779, 1810 |
| BsnI | GGCC | 9 cut(s) | 5, 636, 693, 947, 1209, 1967, 2045, 2089, 2144 |
| Bsp1286I | GDGCHC | 4 cut(s) | 527, 944, 1560, 1636 |
| Bsp13I | TCCGGA | 1 cut(s) | 1026 |
| Bsp143I | GATC | 7 cut(s) | 94, 403, 1662, 1765, 1922, 2028, 2119 |
| Bsp19I | CCATGG | 2 cut(s) | 750, 1040 |
| BspANI | GGCC | 9 cut(s) | 5, 636, 693, 947, 1209, 1967, 2045, 2089, 2144 |
| BspDI | ATCGAT | 1 cut(s) | 1661 |
| BspEI | TCCGGA | 1 cut(s) | 1026 |
| BspFNI | CGCG | 1 cut(s) | 1964 |
| BspHI | TCATGA | 1 cut(s) | 327 |
| BspLI | GGNNCC | 2 cut(s) | 1025, 1758 |
| BspMAI | CTGCAG | 1 cut(s) | 1279 |
| BspMI | ACCTGC | 1 cut(s) | 997 |
| BspPI | GGATC | 5 cut(s) | 398, 1657, 1760, 1917, 2127 |
| BspTI | CTTAAG | 1 cut(s) | 1286 |
| BsrDI | GCAATG | 2 cut(s) | 874, 1546 |
| BssECI | CCNNGG | 7 cut(s) | 6, 361, 750, 1040, 1926, 1962, 2153 |
| BssMI | GATC | 7 cut(s) | 94, 403, 1662, 1765, 1922, 2028, 2119 |
| BssNAI | GTATAC | 1 cut(s) | 1361 |
| BssNI | GRCGYC | 3 cut(s) | 357, 564, 2280 |
| BssT1I | CCWWGG | 3 cut(s) | 6, 750, 1040 |
| Bst1107I | GTATAC | 1 cut(s) | 1361 |
| Bst2UI | CCWGG | 3 cut(s) | 740, 894, 2154 |
| Bst4CI | ACNGT | 4 cut(s) | 201, 365, 613, 1348 |
| Bst6I | CTCTTC | 5 cut(s) | 489, 701, 1254, 1926, 2179 |
| BstACI | GRCGYC | 3 cut(s) | 357, 564, 2280 |
| BstAFI | CTTAAG | 1 cut(s) | 1286 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1625 |
| BstC8I | GCNNGC | 3 cut(s) | 103, 820, 890 |
| BstDEI | CTNAG | 1 cut(s) | 1810 |
| BstDSI | CCRYGG | 4 cut(s) | 361, 750, 1040, 1962 |
| BstEII | GGTNACC | 1 cut(s) | 149 |
| BstF5I | GGATG | 4 cut(s) | 27, 735, 1375, 2020 |
| BstFNI | CGCG | 1 cut(s) | 1964 |
| BstH2I | RGCGCY | 1 cut(s) | 2217 |
| BstHHI | GCGC | 1 cut(s) | 2216 |
| BstKTI | GATC | 7 cut(s) | 97, 406, 1665, 1768, 1925, 2031, 2122 |
| BstMAI | GTCTC | 5 cut(s) | 43, 1153, 1496, 2073, 2169 |
| BstMBI | GATC | 7 cut(s) | 94, 403, 1662, 1765, 1922, 2028, 2119 |
| BstMCI | CGRYCG | 2 cut(s) | 142, 948 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 53, 98, 141, 633, 824, 894, 1625, 2051 |
| BstNI | CCWGG | 3 cut(s) | 740, 894, 2154 |
| BstNSI | RCATGY | 3 cut(s) | 517, 822, 978 |
| BstPI | GGTNACC | 1 cut(s) | 149 |
| BstSCI | CCNGG | 4 cut(s) | 285, 738, 892, 2152 |
| BstSFI | CTRYAG | 2 cut(s) | 1275, 1785 |
| BstSLI | GKGCMC | 2 cut(s) | 527, 1636 |
| BstUI | CGCG | 1 cut(s) | 1964 |
| BstV1I | GCAGC | 2 cut(s) | 68, 101 |
| BstV2I | GAAGAC | 1 cut(s) | 2199 |
| BstX2I | RGATCY | 2 cut(s) | 1765, 1922 |
| BstYI | RGATCY | 2 cut(s) | 1765, 1922 |
| BstZ17I | GTATAC | 1 cut(s) | 1361 |
| BstZI | CGGCCG | 1 cut(s) | 945 |
| Bsu15I | ATCGAT | 1 cut(s) | 1661 |
| BsuRI | GGCC | 9 cut(s) | 5, 636, 693, 947, 1209, 1967, 2045, 2089, 2144 |
| BsuTUI | ATCGAT | 1 cut(s) | 1661 |
| BtgI | CCRYGG | 4 cut(s) | 361, 750, 1040, 1962 |
| BtsCI | GGATG | 4 cut(s) | 27, 735, 1375, 2020 |
| BtsIMutI | CAGTG | 3 cut(s) | 558, 858, 890 |
| BveI | ACCTGC | 1 cut(s) | 997 |
| Cac8I | GCNNGC | 3 cut(s) | 103, 820, 890 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1625 |
| CciI | TCATGA | 1 cut(s) | 327 |
| CfoI | GCGC | 1 cut(s) | 2216 |
| Cfr13I | GGNCC | 2 cut(s) | 1037, 1208 |
| Cfr42I | CCGCGG | 1 cut(s) | 1965 |
| ClaI | ATCGAT | 1 cut(s) | 1661 |
| CseI | GACGC | 2 cut(s) | 365, 553 |
| Csp6I | GTAC | 5 cut(s) | 265, 755, 1189, 1283, 1807 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1575, 1610, 2215, 2250 |
| CviQI | GTAC | 5 cut(s) | 265, 755, 1189, 1283, 1807 |
| DdeI | CTNAG | 1 cut(s) | 1810 |
| DpnI | GATC | 7 cut(s) | 96, 405, 1664, 1767, 1924, 2030, 2121 |
| DpnII | GATC | 7 cut(s) | 94, 403, 1662, 1765, 1922, 2028, 2119 |
| EaeI | YGGCCR | 5 cut(s) | 634, 945, 1965, 2043, 2142 |
| EagI | CGGCCG | 1 cut(s) | 945 |
| Eam1104I | CTCTTC | 5 cut(s) | 489, 701, 1254, 1926, 2179 |
| EarI | CTCTTC | 5 cut(s) | 489, 701, 1254, 1926, 2179 |
| EclXI | CGGCCG | 1 cut(s) | 945 |
| Eco130I | CCWWGG | 3 cut(s) | 6, 750, 1040 |
| Eco147I | AGGCCT | 1 cut(s) | 2089 |
| Eco47I | GGWCC | 1 cut(s) | 1037 |
| Eco47III | AGCGCT | 1 cut(s) | 2215 |
| Eco52I | CGGCCG | 1 cut(s) | 945 |
| Eco57I | CTGAAG | 1 cut(s) | 1235 |
| Eco91I | GGTNACC | 1 cut(s) | 149 |
| EcoO65I | GGTNACC | 1 cut(s) | 149 |
| EcoRII | CCWGG | 3 cut(s) | 738, 892, 2152 |
| EcoT14I | CCWWGG | 3 cut(s) | 6, 750, 1040 |
| EcoT22I | ATGCAT | 1 cut(s) | 820 |
| ErhI | CCWWGG | 3 cut(s) | 6, 750, 1040 |
| Esp3I | CGTCTC | 2 cut(s) | 1153, 2073 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1233, 1265 |
| FaqI | GGGAC | 3 cut(s) | 572, 779, 1810 |
| FauI | CCCGC | 1 cut(s) | 597 |
| FbaI | TGATCA | 1 cut(s) | 94 |
| FblI | GTMKAC | 2 cut(s) | 1350, 1360 |
| Fnu4HI | GCNGC | 6 cut(s) | 57, 90, 865, 1207, 1617, 1965 |
| FokI | GGATG | 4 cut(s) | 34, 722, 1382, 2027 |
| Fsp4HI | GCNGC | 6 cut(s) | 57, 90, 865, 1207, 1617, 1965 |
| FspBI | CTAG | 2 cut(s) | 1220, 1706 |
| GlaI | GCGC | 1 cut(s) | 2215 |
| GluI | GCNGC | 6 cut(s) | 57, 90, 865, 1207, 1617, 1965 |
| GsuI | CTGGAG | 1 cut(s) | 406 |
| HaeII | RGCGCY | 1 cut(s) | 2217 |
| HaeIII | GGCC | 9 cut(s) | 5, 636, 693, 947, 1209, 1967, 2045, 2089, 2144 |
| HapII | CCGG | 3 cut(s) | 206, 286, 1027 |
| HgaI | GACGC | 2 cut(s) | 365, 553 |
| HhaI | GCGC | 1 cut(s) | 2216 |
| Hin1I | GRCGYC | 3 cut(s) | 357, 564, 2280 |
| Hin6I | GCGC | 1 cut(s) | 2214 |
| HinP1I | GCGC | 1 cut(s) | 2214 |
| HincII | GTYRAC | 1 cut(s) | 1069 |
| HindII | GTYRAC | 1 cut(s) | 1069 |
| HindIII | AAGCTT | 3 cut(s) | 1108, 1322, 2068 |
| HinfI | GANTC | 5 cut(s) | 551, 1152, 1244, 1984, 2201 |
| HpaI | GTTAAC | 1 cut(s) | 1069 |
| HpaII | CCGG | 3 cut(s) | 206, 286, 1027 |
| Hpy166II | GTNNAC | 8 cut(s) | 246, 525, 1069, 1233, 1351, 1361, 1634, 1719 |
| Hpy188I | TCNGA | 5 cut(s) | 398, 849, 1254, 1735, 1927 |
| Hpy188III | TCNNGA | 7 cut(s) | 328, 1027, 1156, 1417, 1760, 1994, 2198 |
| Hpy8I | GTNNAC | 8 cut(s) | 246, 525, 1069, 1233, 1351, 1361, 1634, 1719 |
| Hpy99I | CGWCG | 2 cut(s) | 569, 2282 |
| HpyAV | CCTTC | 6 cut(s) | 896, 1285, 1325, 2005, 2100, 2240 |
| HpyCH4III | ACNGT | 4 cut(s) | 201, 365, 613, 1348 |
| HpyCH4IV | ACGT | 2 cut(s) | 777, 2280 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 53, 98, 141, 633, 824, 894, 1625, 2051 |
| HpyF3I | CTNAG | 1 cut(s) | 1810 |
| HpySE526I | ACGT | 2 cut(s) | 777, 2280 |
| Hsp92I | GRCGYC | 3 cut(s) | 357, 564, 2280 |
| HspAI | GCGC | 1 cut(s) | 2214 |
| Kpn2I | TCCGGA | 1 cut(s) | 1026 |
| Ksp22I | TGATCA | 1 cut(s) | 94 |
| KspAI | GTTAAC | 1 cut(s) | 1069 |
| KspI | CCGCGG | 1 cut(s) | 1965 |
| Kzo9I | GATC | 7 cut(s) | 94, 403, 1662, 1765, 1922, 2028, 2119 |
| LmnI | GCTCC | 5 cut(s) | 399, 651, 742, 849, 1742 |
| Lsp1109I | GCAGC | 2 cut(s) | 68, 101 |
| LweI | GCATC | 3 cut(s) | 186, 237, 1186 |
| MaeI | CTAG | 2 cut(s) | 1220, 1706 |
| MaeII | ACGT | 2 cut(s) | 777, 2280 |
| MalI | GATC | 7 cut(s) | 96, 405, 1664, 1767, 1924, 2030, 2121 |
| MboI | GATC | 7 cut(s) | 94, 403, 1662, 1765, 1922, 2028, 2119 |
| MflI | RGATCY | 2 cut(s) | 1765, 1922 |
| MhlI | GDGCHC | 4 cut(s) | 527, 944, 1560, 1636 |
| MlsI | TGGCCA | 2 cut(s) | 2045, 2144 |
| MluNI | TGGCCA | 2 cut(s) | 2045, 2144 |
| MlyI | GAGTC | 2 cut(s) | 560, 2210 |
| MmeI | TCCRAC | 2 cut(s) | 1713, 1805 |
| Mox20I | TGGCCA | 2 cut(s) | 2045, 2144 |
| Mph1103I | ATGCAT | 1 cut(s) | 820 |
| MroI | TCCGGA | 1 cut(s) | 1026 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1248, 1824 |
| MscI | TGGCCA | 2 cut(s) | 2045, 2144 |
| MseI | TTAA | 9 cut(s) | 657, 705, 759, 1068, 1179, 1287, 1434, 2066, 2072 |
| MslI | CAYNNNNRTG | 5 cut(s) | 518, 1045, 1314, 1470, 1680 |
| Msp20I | TGGCCA | 2 cut(s) | 2045, 2144 |
| MspA1I | CMGCKG | 3 cut(s) | 92, 144, 1964 |
| MspCI | CTTAAG | 1 cut(s) | 1286 |
| MspI | CCGG | 3 cut(s) | 206, 286, 1027 |
| MspR9I | CCNGG | 4 cut(s) | 287, 740, 894, 2154 |
| MvaI | CCWGG | 3 cut(s) | 740, 894, 2154 |
| MvnI | CGCG | 1 cut(s) | 1964 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 53, 98, 141, 633, 824, 894, 1625, 2051 |
| NciI | CCSGG | 1 cut(s) | 287 |
| NcoI | CCATGG | 2 cut(s) | 750, 1040 |
| NdeII | GATC | 7 cut(s) | 94, 403, 1662, 1765, 1922, 2028, 2119 |
| NlaIV | GGNNCC | 2 cut(s) | 1025, 1758 |
| NmeAIII | GCCGAG | 1 cut(s) | 923 |
| NmuCI | GTSAC | 7 cut(s) | 149, 182, 236, 425, 455, 1421, 1853 |
| NsiI | ATGCAT | 1 cut(s) | 820 |
| NspI | RCATGY | 3 cut(s) | 517, 822, 978 |
| PaeI | GCATGC | 1 cut(s) | 822 |
| PagI | TCATGA | 1 cut(s) | 327 |
| PaqCI | CACCTGC | 1 cut(s) | 997 |
| PceI | AGGCCT | 1 cut(s) | 2089 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 376, 481, 783 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1248, 1824 |
| PfeI | GAWTC | 3 cut(s) | 1152, 1244, 1984 |
| PfoI | TCCNGGA | 1 cut(s) | 738 |
| PkrI | GCNGC | 6 cut(s) | 58, 91, 866, 1208, 1618, 1966 |
| PleI | GAGTC | 2 cut(s) | 559, 2209 |
| PpsI | GAGTC | 2 cut(s) | 559, 2209 |
| Psp6I | CCWGG | 3 cut(s) | 738, 892, 2152 |
| PspEI | GGTNACC | 1 cut(s) | 149 |
| PspGI | CCWGG | 3 cut(s) | 738, 892, 2152 |
| PspN4I | GGNNCC | 2 cut(s) | 1025, 1758 |
| PspPI | GGNCC | 2 cut(s) | 1037, 1208 |
| PstI | CTGCAG | 1 cut(s) | 1279 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1625 |
| PsuI | RGATCY | 2 cut(s) | 1765, 1922 |
| PvuII | CAGCTG | 1 cut(s) | 92 |
| RsaI | GTAC | 5 cut(s) | 266, 756, 1190, 1284, 1808 |
| RsaNI | GTAC | 5 cut(s) | 265, 755, 1189, 1283, 1807 |
| RseI | CAYNNNNRTG | 5 cut(s) | 518, 1045, 1314, 1470, 1680 |
| SacII | CCGCGG | 1 cut(s) | 1965 |
| SaqAI | TTAA | 9 cut(s) | 657, 705, 759, 1068, 1179, 1287, 1434, 2066, 2072 |
| SatI | GCNGC | 6 cut(s) | 57, 90, 865, 1207, 1617, 1965 |
| Sau3AI | GATC | 7 cut(s) | 94, 403, 1662, 1765, 1922, 2028, 2119 |
| Sau96I | GGNCC | 2 cut(s) | 1037, 1208 |
| ScaI | AGTACT | 2 cut(s) | 1190, 1284 |
| SchI | GAGTC | 2 cut(s) | 560, 2210 |
| ScrFI | CCNGG | 4 cut(s) | 287, 740, 894, 2154 |
| SduI | GDGCHC | 4 cut(s) | 527, 944, 1560, 1636 |
| SfaNI | GCATC | 3 cut(s) | 186, 237, 1186 |
| SfcI | CTRYAG | 2 cut(s) | 1275, 1785 |
| Sfr303I | CCGCGG | 1 cut(s) | 1965 |
| SgrBI | CCGCGG | 1 cut(s) | 1965 |
| SinI | GGWCC | 1 cut(s) | 1037 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 518, 1045, 1314, 1470, 1680 |
| SmlI | CTYRAG | 5 cut(s) | 117, 582, 1286, 1364, 2198 |
| SmoI | CTYRAG | 5 cut(s) | 117, 582, 1286, 1364, 2198 |
| SphI | GCATGC | 1 cut(s) | 822 |
| SseBI | AGGCCT | 1 cut(s) | 2089 |
| SspI | AATATT | 2 cut(s) | 2127, 2266 |
| SspMI | CTAG | 2 cut(s) | 1220, 1706 |
| StuI | AGGCCT | 1 cut(s) | 2089 |
| StyD4I | CCNGG | 4 cut(s) | 285, 738, 892, 2152 |
| StyI | CCWWGG | 3 cut(s) | 6, 750, 1040 |
| TaaI | ACNGT | 4 cut(s) | 201, 365, 613, 1348 |
| TaiI | ACGT | 2 cut(s) | 780, 2283 |
| TaqI | TCGA | 8 cut(s) | 370, 475, 484, 543, 1194, 1603, 1655, 1661 |
| TatI | WGTACW | 2 cut(s) | 1188, 1282 |
| TauI | GCSGC | 4 cut(s) | 867, 1209, 1619, 1967 |
| TfiI | GAWTC | 3 cut(s) | 1152, 1244, 1984 |
| Tru1I | TTAA | 9 cut(s) | 657, 705, 759, 1068, 1179, 1287, 1434, 2066, 2072 |
| Tru9I | TTAA | 9 cut(s) | 657, 705, 759, 1068, 1179, 1287, 1434, 2066, 2072 |
| TscAI | CASTG | 3 cut(s) | 565, 865, 890 |
| TseFI | GTSAC | 7 cut(s) | 149, 182, 236, 425, 455, 1421, 1853 |
| TseI | GCWGC | 2 cut(s) | 56, 89 |
| Tsp45I | GTSAC | 7 cut(s) | 149, 182, 236, 425, 455, 1421, 1853 |
| TspDTI | ATGAA | 7 cut(s) | 1326, 1386, 1553, 1902, 2016, 2111, 2259 |
| TspRI | CASTG | 3 cut(s) | 565, 865, 890 |
| Vha464I | CTTAAG | 1 cut(s) | 1286 |
| VneI | GTGCAC | 2 cut(s) | 523, 1632 |
| VpaK11BI | GGWCC | 1 cut(s) | 1037 |
| XapI | RAATTY | 4 cut(s) | 982, 1086, 1131, 2020 |
| XceI | RCATGY | 3 cut(s) | 517, 822, 978 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 264, 890 |
| XmiI | GTMKAC | 2 cut(s) | 1350, 1360 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1248, 1824 |
| XspI | CTAG | 2 cut(s) | 1220, 1706 |
| ZraI | GACGTC | 1 cut(s) | 2281 |
| ZrmI | AGTACT | 2 cut(s) | 1190, 1284 |
| Zsp2I | ATGCAT | 1 cut(s) | 820 |