specification of plant organ axis polarity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| GUB_WAK_bind | PF13947 | 33 - 93 | 1.5e-10 | Wall-associated receptor kinase galacturonan-binding |
| EGF_CA | PF07645 | 295 - 336 | 3.7e-08 | Calcium-binding EGF domain |
| Pkinase | PF00069 | 423 - 628 | 3.2e-43 | Protein kinase domain |
| PK_Tyr_Ser-Thr | PF07714 | 426 - 620 | 1.2e-41 | Protein tyrosine and serine/threonine kinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 777 |
| AatII | GACGTC | 1 cut(s) | 1824 |
| Acc36I | ACCTGC | 3 cut(s) | 168, 357, 777 |
| AccB1I | GGYRCC | 1 cut(s) | 1367 |
| AccI | GTMKAC | 1 cut(s) | 1485 |
| AccII | CGCG | 1 cut(s) | 800 |
| AciI | CCGC | 1 cut(s) | 111 |
| AclWI | GGATC | 1 cut(s) | 1216 |
| AcsI | RAATTY | 4 cut(s) | 170, 940, 1059, 1953 |
| AcuI | CTGAAG | 2 cut(s) | 312, 1139 |
| AcyI | GRCGYC | 1 cut(s) | 1821 |
| AfaI | GTAC | 2 cut(s) | 55, 1154 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 43, 809, 917, 1884 |
| AgsI | TTSAA | 8 cut(s) | 417, 485, 550, 649, 907, 1573, 1797, 1948 |
| AhlI | ACTAGT | 1 cut(s) | 1196 |
| AjnI | CCWGG | 3 cut(s) | 841, 1500, 1780 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 371, 403 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 431, 463 |
| AluBI | AGCT | 7 cut(s) | 74, 296, 618, 749, 1709, 1830, 1852 |
| AluI | AGCT | 7 cut(s) | 74, 296, 618, 749, 1709, 1830, 1852 |
| Alw21I | GWGCWC | 3 cut(s) | 899, 1521, 1600 |
| Alw26I | GTCTC | 3 cut(s) | 1037, 1211, 1457 |
| Alw44I | GTGCAC | 1 cut(s) | 895 |
| AlwI | GGATC | 1 cut(s) | 1216 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 74, 77, 1589 |
| AoxI | GGCC | 6 cut(s) | 991, 1069, 1254, 1886, 2013, 2056 |
| ApaLI | GTGCAC | 1 cut(s) | 895 |
| ApeKI | GCWGC | 5 cut(s) | 71, 74, 77, 615, 659 |
| ApoI | RAATTY | 4 cut(s) | 170, 940, 1059, 1953 |
| AseI | ATTAAT | 1 cut(s) | 1974 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 764 |
| AspA2I | CCTAGG | 1 cut(s) | 433 |
| AspLEI | GCGC | 3 cut(s) | 515, 794, 802 |
| AspS9I | GGNCC | 4 cut(s) | 920, 992, 1777, 2014 |
| AsuHPI | GGTGA | 4 cut(s) | 275, 1301, 1414, 1489 |
| AvaII | GGWCC | 2 cut(s) | 920, 1777 |
| AvrII | CCTAGG | 1 cut(s) | 433 |
| AxyI | CCTNAGG | 1 cut(s) | 1890 |
| BaeGI | GKGCMC | 3 cut(s) | 899, 1372, 1508 |
| BanI | GGYRCC | 1 cut(s) | 1367 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1461, 1493 |
| Bbv12I | GWGCWC | 3 cut(s) | 899, 1521, 1600 |
| BbvI | GCAGC | 5 cut(s) | 61, 64, 83, 627, 646 |
| BccI | CCATC | 6 cut(s) | 584, 866, 873, 1931, 1958, 2025 |
| BceAI | ACGGC | 2 cut(s) | 576, 915 |
| BciT130I | CCWGG | 3 cut(s) | 843, 1502, 1782 |
| BciVI | GTATCC | 3 cut(s) | 565, 1763, 1778 |
| BclI | TGATCA | 3 cut(s) | 493, 1384, 1729 |
| BcoDI | GTCTC | 3 cut(s) | 1037, 1211, 1457 |
| BcuI | ACTAGT | 1 cut(s) | 1196 |
| BfaI | CTAG | 7 cut(s) | 51, 434, 947, 1197, 1601, 1742, 1844 |
| BfmI | CTRYAG | 6 cut(s) | 613, 816, 1065, 1236, 1590, 1825 |
| BfoI | RGCGCY | 1 cut(s) | 516 |
| BfuAI | ACCTGC | 3 cut(s) | 168, 357, 777 |
| BfuI | GTATCC | 3 cut(s) | 565, 1763, 1778 |
| BglII | AGATCT | 1 cut(s) | 1243 |
| BisI | GCNGC | 6 cut(s) | 72, 75, 78, 112, 616, 660 |
| BlnI | CCTAGG | 1 cut(s) | 433 |
| BlsI | GCNGC | 6 cut(s) | 73, 76, 79, 113, 617, 661 |
| BmcAI | AGTACT | 2 cut(s) | 55, 1154 |
| Bme1390I | CCNGG | 3 cut(s) | 843, 1502, 1782 |
| Bme18I | GGWCC | 2 cut(s) | 920, 1777 |
| BmgT120I | GGNCC | 4 cut(s) | 920, 992, 1777, 2014 |
| BmiI | GGNNCC | 2 cut(s) | 1369, 1779 |
| BmrFI | CCNGG | 3 cut(s) | 843, 1502, 1782 |
| BmsI | GCATC | 3 cut(s) | 1017, 1589, 1892 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1469 |
| BpuEI | CTTGAG | 2 cut(s) | 66, 1268 |
| BsaHI | GRCGYC | 1 cut(s) | 1821 |
| BsaJI | CCNNGG | 5 cut(s) | 433, 1285, 1500, 1501, 1780 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 719, 749, 1197, 1227, 1598, 1628 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 43, 809, 917, 1884 |
| Bse118I | RCCGGY | 1 cut(s) | 690 |
| Bse21I | CCTNAGG | 1 cut(s) | 1890 |
| Bse3DI | GCAATG | 4 cut(s) | 322, 627, 922, 979 |
| BseBI | CCWGG | 3 cut(s) | 843, 1502, 1782 |
| BseDI | CCNNGG | 5 cut(s) | 433, 1285, 1500, 1501, 1780 |
| BseGI | GGATG | 4 cut(s) | 323, 534, 865, 1110 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 43, 809, 917, 1884 |
| BseMI | GCAATG | 4 cut(s) | 322, 627, 922, 979 |
| BseMII | CTCAG | 2 cut(s) | 114, 1881 |
| BseRI | GAGGAG | 2 cut(s) | 161, 1606 |
| BseSI | GKGCMC | 3 cut(s) | 899, 1372, 1508 |
| BseXI | GCAGC | 5 cut(s) | 61, 64, 83, 627, 646 |
| BseYI | CCCAGC | 1 cut(s) | 515 |
| Bsh1236I | CGCG | 1 cut(s) | 800 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1030 |
| BshFI | GGCC | 6 cut(s) | 993, 1071, 1256, 1888, 2015, 2058 |
| BshNI | GGYRCC | 1 cut(s) | 1367 |
| BsiEI | CGRYCG | 1 cut(s) | 1030 |
| BsiHKAI | GWGCWC | 3 cut(s) | 899, 1521, 1600 |
| BsiSI | CCGG | 1 cut(s) | 691 |
| BslFI | GGGAC | 3 cut(s) | 614, 1128, 1457 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 43, 809, 917, 1884 |
| BsmAI | GTCTC | 3 cut(s) | 1037, 1211, 1457 |
| BsmBI | CGTCTC | 1 cut(s) | 1037 |
| BsmFI | GGGAC | 3 cut(s) | 614, 1128, 1457 |
| BsnI | GGCC | 6 cut(s) | 993, 1071, 1256, 1888, 2015, 2058 |
| Bsp1286I | GDGCHC | 5 cut(s) | 899, 1372, 1508, 1521, 1600 |
| Bsp143I | GATC | 5 cut(s) | 493, 1208, 1243, 1384, 1729 |
| BspACI | CCGC | 1 cut(s) | 111 |
| BspANI | GGCC | 6 cut(s) | 993, 1071, 1256, 1888, 2015, 2058 |
| BspCNI | CTCAG | 2 cut(s) | 113, 1882 |
| BspFNI | CGCG | 1 cut(s) | 800 |
| BspLI | GGNNCC | 2 cut(s) | 1369, 1779 |
| BspMAI | CTGCAG | 3 cut(s) | 617, 1240, 1594 |
| BspMI | ACCTGC | 3 cut(s) | 168, 357, 777 |
| BspPI | GGATC | 1 cut(s) | 1216 |
| BspT107I | GGYRCC | 1 cut(s) | 1367 |
| BsrDI | GCAATG | 4 cut(s) | 322, 627, 922, 979 |
| BsrFI | RCCGGY | 1 cut(s) | 690 |
| BssAI | RCCGGY | 1 cut(s) | 690 |
| BssECI | CCNNGG | 5 cut(s) | 433, 1285, 1500, 1501, 1780 |
| BssMI | GATC | 5 cut(s) | 493, 1208, 1243, 1384, 1729 |
| BssNAI | GTATAC | 1 cut(s) | 1486 |
| BssNI | GRCGYC | 1 cut(s) | 1821 |
| BssT1I | CCWWGG | 2 cut(s) | 433, 1285 |
| Bst1107I | GTATAC | 1 cut(s) | 1486 |
| Bst2UI | CCWGG | 3 cut(s) | 843, 1502, 1782 |
| Bst4CI | ACNGT | 5 cut(s) | 397, 584, 645, 1031, 1309 |
| BstACI | GRCGYC | 1 cut(s) | 1821 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 77 |
| BstC8I | GCNNGC | 2 cut(s) | 298, 772 |
| BstDEI | CTNAG | 2 cut(s) | 100, 1890 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1882 |
| BstF5I | GGATG | 4 cut(s) | 323, 534, 865, 1110 |
| BstFNI | CGCG | 1 cut(s) | 800 |
| BstH2I | RGCGCY | 1 cut(s) | 516 |
| BstHHI | GCGC | 3 cut(s) | 515, 794, 802 |
| BstKTI | GATC | 5 cut(s) | 496, 1211, 1246, 1387, 1732 |
| BstMAI | GTCTC | 3 cut(s) | 1037, 1211, 1457 |
| BstMBI | GATC | 5 cut(s) | 493, 1208, 1243, 1384, 1729 |
| BstMCI | CGRYCG | 1 cut(s) | 1030 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 77, 83, 349, 629, 776, 2021 |
| BstNI | CCWGG | 3 cut(s) | 843, 1502, 1782 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1469 |
| BstSCI | CCNGG | 3 cut(s) | 841, 1500, 1780 |
| BstSFI | CTRYAG | 6 cut(s) | 613, 816, 1065, 1236, 1590, 1825 |
| BstSLI | GKGCMC | 3 cut(s) | 899, 1372, 1508 |
| BstUI | CGCG | 1 cut(s) | 800 |
| BstV1I | GCAGC | 5 cut(s) | 61, 64, 83, 627, 646 |
| BstX2I | RGATCY | 2 cut(s) | 1208, 1243 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 286, 872 |
| BstYI | RGATCY | 2 cut(s) | 1208, 1243 |
| BstZ17I | GTATAC | 1 cut(s) | 1486 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1890 |
| BsuI | GTATCC | 3 cut(s) | 565, 1763, 1778 |
| BsuRI | GGCC | 6 cut(s) | 993, 1071, 1256, 1888, 2015, 2058 |
| BtsCI | GGATG | 4 cut(s) | 323, 534, 865, 1110 |
| BtsIMutI | CAGTG | 1 cut(s) | 393 |
| BveI | ACCTGC | 3 cut(s) | 168, 357, 777 |
| Cac8I | GCNNGC | 2 cut(s) | 298, 772 |
| CaiI | CAGNNNCTG | 3 cut(s) | 74, 77, 1589 |
| CfoI | GCGC | 3 cut(s) | 515, 794, 802 |
| Cfr10I | RCCGGY | 1 cut(s) | 690 |
| Cfr13I | GGNCC | 4 cut(s) | 920, 992, 1777, 2014 |
| CsiI | ACCWGGT | 1 cut(s) | 841 |
| Csp6I | GTAC | 2 cut(s) | 54, 1153 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1848, 1883 |
| CviAII | CATG | 4 cut(s) | 142, 1271, 1557, 2064 |
| CviQI | GTAC | 2 cut(s) | 54, 1153 |
| DdeI | CTNAG | 2 cut(s) | 100, 1890 |
| DpnI | GATC | 5 cut(s) | 495, 1210, 1245, 1386, 1731 |
| DpnII | GATC | 5 cut(s) | 493, 1208, 1243, 1384, 1729 |
| DraI | TTTAAA | 1 cut(s) | 669 |
| Eco130I | CCWWGG | 2 cut(s) | 433, 1285 |
| Eco147I | AGGCCT | 3 cut(s) | 1071, 1888, 2058 |
| Eco32I | GATATC | 1 cut(s) | 369 |
| Eco47I | GGWCC | 2 cut(s) | 920, 1777 |
| Eco57I | CTGAAG | 2 cut(s) | 312, 1139 |
| Eco81I | CCTNAGG | 1 cut(s) | 1890 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1882 |
| EcoRI | GAATTC | 1 cut(s) | 170 |
| EcoRII | CCWGG | 3 cut(s) | 841, 1500, 1780 |
| EcoRV | GATATC | 1 cut(s) | 369 |
| EcoT14I | CCWWGG | 2 cut(s) | 433, 1285 |
| ErhI | CCWWGG | 2 cut(s) | 433, 1285 |
| Esp3I | CGTCTC | 1 cut(s) | 1037 |
| FaeI | CATG | 4 cut(s) | 145, 1274, 1560, 2067 |
| FaqI | GGGAC | 3 cut(s) | 614, 1128, 1457 |
| FatI | CATG | 4 cut(s) | 141, 1270, 1556, 2063 |
| FauNDI | CATATG | 1 cut(s) | 470 |
| FbaI | TGATCA | 3 cut(s) | 493, 1384, 1729 |
| FblI | GTMKAC | 1 cut(s) | 1485 |
| Fnu4HI | GCNGC | 6 cut(s) | 72, 75, 78, 112, 616, 660 |
| FokI | GGATG | 4 cut(s) | 310, 521, 852, 1117 |
| Fsp4HI | GCNGC | 6 cut(s) | 72, 75, 78, 112, 616, 660 |
| FspBI | CTAG | 7 cut(s) | 51, 434, 947, 1197, 1601, 1742, 1844 |
| GlaI | GCGC | 3 cut(s) | 514, 793, 801 |
| GluI | GCNGC | 6 cut(s) | 72, 75, 78, 112, 616, 660 |
| GsaI | CCCAGC | 1 cut(s) | 519 |
| HaeII | RGCGCY | 1 cut(s) | 516 |
| HaeIII | GGCC | 6 cut(s) | 993, 1071, 1256, 1888, 2015, 2058 |
| HapII | CCGG | 1 cut(s) | 691 |
| HhaI | GCGC | 3 cut(s) | 515, 794, 802 |
| Hin1I | GRCGYC | 1 cut(s) | 1821 |
| Hin1II | CATG | 4 cut(s) | 145, 1274, 1560, 2067 |
| Hin6I | GCGC | 3 cut(s) | 513, 792, 800 |
| HinP1I | GCGC | 3 cut(s) | 513, 792, 800 |
| HindIII | AAGCTT | 1 cut(s) | 294 |
| HinfI | GANTC | 6 cut(s) | 12, 222, 703, 734, 1281, 1375 |
| HpaII | CCGG | 1 cut(s) | 691 |
| HphI | GGTGA | 4 cut(s) | 275, 1301, 1414, 1489 |
| Hpy166II | GTNNAC | 3 cut(s) | 897, 1312, 1486 |
| Hpy188I | TCNGA | 5 cut(s) | 103, 373, 1568, 1585, 1699 |
| Hpy188III | TCNNGA | 2 cut(s) | 869, 1247 |
| Hpy8I | GTNNAC | 3 cut(s) | 897, 1312, 1486 |
| Hpy99I | CGWCG | 1 cut(s) | 562 |
| HpyAV | CCTTC | 6 cut(s) | 254, 634, 754, 1246, 1286, 1973 |
| HpyCH4III | ACNGT | 5 cut(s) | 397, 584, 645, 1031, 1309 |
| HpyCH4IV | ACGT | 4 cut(s) | 285, 566, 1714, 1821 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 77, 83, 349, 629, 776, 2021 |
| HpyF3I | CTNAG | 2 cut(s) | 100, 1890 |
| HpySE526I | ACGT | 4 cut(s) | 285, 566, 1714, 1821 |
| Hsp92I | GRCGYC | 1 cut(s) | 1821 |
| Hsp92II | CATG | 4 cut(s) | 145, 1274, 1560, 2067 |
| HspAI | GCGC | 3 cut(s) | 513, 792, 800 |
| Ksp22I | TGATCA | 3 cut(s) | 493, 1384, 1729 |
| Kzo9I | GATC | 5 cut(s) | 493, 1208, 1243, 1384, 1729 |
| LmnI | GCTCC | 2 cut(s) | 1595, 1706 |
| Lsp1109I | GCAGC | 5 cut(s) | 61, 64, 83, 627, 646 |
| LweI | GCATC | 3 cut(s) | 1017, 1589, 1892 |
| MabI | ACCWGGT | 1 cut(s) | 841 |
| MaeI | CTAG | 7 cut(s) | 51, 434, 947, 1197, 1601, 1742, 1844 |
| MaeII | ACGT | 4 cut(s) | 285, 566, 1714, 1821 |
| MaeIII | GTNAC | 7 cut(s) | 155, 238, 319, 404, 821, 1817, 1940 |
| MalI | GATC | 5 cut(s) | 495, 1210, 1245, 1386, 1731 |
| MboI | GATC | 5 cut(s) | 493, 1208, 1243, 1384, 1729 |
| MboII | GAAGA | 7 cut(s) | 179, 452, 1132, 1253, 1585, 1946, 2040 |
| MfeI | CAATTG | 1 cut(s) | 181 |
| MflI | RGATCY | 2 cut(s) | 1208, 1243 |
| MhlI | GDGCHC | 5 cut(s) | 899, 1372, 1508, 1521, 1600 |
| MlyI | GAGTC | 4 cut(s) | 6, 231, 728, 1369 |
| MmeI | TCCRAC | 3 cut(s) | 303, 549, 1072 |
| MroXI | GAANNNNTTC | 1 cut(s) | 764 |
| MseI | TTAA | 7 cut(s) | 218, 606, 668, 708, 1181, 1395, 1974 |
| MslI | CAYNNNNRTG | 4 cut(s) | 870, 1431, 1555, 1644 |
| MspA1I | CMGCKG | 1 cut(s) | 74 |
| MspI | CCGG | 1 cut(s) | 691 |
| MspR9I | CCNGG | 3 cut(s) | 843, 1502, 1782 |
| MunI | CAATTG | 1 cut(s) | 181 |
| MvaI | CCWGG | 3 cut(s) | 843, 1502, 1782 |
| MvnI | CGCG | 1 cut(s) | 800 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 77, 83, 349, 629, 776, 2021 |
| NdeI | CATATG | 1 cut(s) | 470 |
| NdeII | GATC | 5 cut(s) | 493, 1208, 1243, 1384, 1729 |
| NlaIII | CATG | 4 cut(s) | 145, 1274, 1560, 2067 |
| NlaIV | GGNNCC | 2 cut(s) | 1369, 1779 |
| NmuCI | GTSAC | 4 cut(s) | 319, 404, 1817, 1940 |
| PaqCI | CACCTGC | 1 cut(s) | 777 |
| PasI | CCCWGGG | 1 cut(s) | 1501 |
| PceI | AGGCCT | 3 cut(s) | 1071, 1888, 2058 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 563 |
| PdmI | GAANNNNTTC | 1 cut(s) | 764 |
| PfeI | GAWTC | 2 cut(s) | 703, 1281 |
| PkrI | GCNGC | 6 cut(s) | 73, 76, 79, 113, 617, 661 |
| PleI | GAGTC | 4 cut(s) | 6, 230, 728, 1369 |
| PpsI | GAGTC | 4 cut(s) | 6, 230, 728, 1369 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1469 |
| PshBI | ATTAAT | 1 cut(s) | 1974 |
| Psp6I | CCWGG | 3 cut(s) | 841, 1500, 1780 |
| PspFI | CCCAGC | 1 cut(s) | 515 |
| PspGI | CCWGG | 3 cut(s) | 841, 1500, 1780 |
| PspN4I | GGNNCC | 2 cut(s) | 1369, 1779 |
| PspPI | GGNCC | 4 cut(s) | 920, 992, 1777, 2014 |
| PstI | CTGCAG | 3 cut(s) | 617, 1240, 1594 |
| PstNI | CAGNNNCTG | 3 cut(s) | 74, 77, 1589 |
| PsuI | RGATCY | 2 cut(s) | 1208, 1243 |
| PvuII | CAGCTG | 1 cut(s) | 74 |
| RsaI | GTAC | 2 cut(s) | 55, 1154 |
| RsaNI | GTAC | 2 cut(s) | 54, 1153 |
| RseI | CAYNNNNRTG | 4 cut(s) | 870, 1431, 1555, 1644 |
| SaqAI | TTAA | 7 cut(s) | 218, 606, 668, 708, 1181, 1395, 1974 |
| SatI | GCNGC | 6 cut(s) | 72, 75, 78, 112, 616, 660 |
| Sau3AI | GATC | 5 cut(s) | 493, 1208, 1243, 1384, 1729 |
| Sau96I | GGNCC | 4 cut(s) | 920, 992, 1777, 2014 |
| ScaI | AGTACT | 2 cut(s) | 55, 1154 |
| SchI | GAGTC | 4 cut(s) | 6, 231, 728, 1369 |
| ScrFI | CCNGG | 3 cut(s) | 843, 1502, 1782 |
| SduI | GDGCHC | 5 cut(s) | 899, 1372, 1508, 1521, 1600 |
| SexAI | ACCWGGT | 1 cut(s) | 841 |
| SfaNI | GCATC | 3 cut(s) | 1017, 1589, 1892 |
| SfcI | CTRYAG | 6 cut(s) | 613, 816, 1065, 1236, 1590, 1825 |
| SinI | GGWCC | 2 cut(s) | 920, 1777 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 870, 1431, 1555, 1644 |
| SmlI | CTYRAG | 2 cut(s) | 81, 1247 |
| SmoI | CTYRAG | 2 cut(s) | 81, 1247 |
| SpeI | ACTAGT | 1 cut(s) | 1196 |
| SseBI | AGGCCT | 3 cut(s) | 1071, 1888, 2058 |
| SsiI | CCGC | 1 cut(s) | 111 |
| SspI | AATATT | 1 cut(s) | 500 |
| SspMI | CTAG | 7 cut(s) | 51, 434, 947, 1197, 1601, 1742, 1844 |
| StuI | AGGCCT | 3 cut(s) | 1071, 1888, 2058 |
| StyD4I | CCNGG | 3 cut(s) | 841, 1500, 1780 |
| StyI | CCWWGG | 2 cut(s) | 433, 1285 |
| TaaI | ACNGT | 5 cut(s) | 397, 584, 645, 1031, 1309 |
| TaiI | ACGT | 4 cut(s) | 288, 569, 1717, 1824 |
| TaqI | TCGA | 2 cut(s) | 345, 450 |
| TaqII | GACCGA | 1 cut(s) | 937 |
| TatI | WGTACW | 2 cut(s) | 53, 1152 |
| TauI | GCSGC | 1 cut(s) | 114 |
| TfiI | GAWTC | 2 cut(s) | 703, 1281 |
| Tru1I | TTAA | 7 cut(s) | 218, 606, 668, 708, 1181, 1395, 1974 |
| Tru9I | TTAA | 7 cut(s) | 218, 606, 668, 708, 1181, 1395, 1974 |
| TscAI | CASTG | 1 cut(s) | 400 |
| TseFI | GTSAC | 4 cut(s) | 319, 404, 1817, 1940 |
| TseI | GCWGC | 5 cut(s) | 71, 74, 77, 615, 659 |
| Tsp45I | GTSAC | 4 cut(s) | 319, 404, 1817, 1940 |
| TspRI | CASTG | 1 cut(s) | 400 |
| VneI | GTGCAC | 1 cut(s) | 895 |
| VpaK11BI | GGWCC | 2 cut(s) | 920, 1777 |
| VspI | ATTAAT | 1 cut(s) | 1974 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1882 |
| XapI | RAATTY | 4 cut(s) | 170, 940, 1059, 1953 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 839 |
| XmaJI | CCTAGG | 1 cut(s) | 433 |
| XmiI | GTMKAC | 1 cut(s) | 1485 |
| XmnI | GAANNNNTTC | 1 cut(s) | 764 |
| XspI | CTAG | 7 cut(s) | 51, 434, 947, 1197, 1601, 1742, 1844 |
| ZraI | GACGTC | 1 cut(s) | 1822 |
| ZrmI | AGTACT | 2 cut(s) | 55, 1154 |