Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000066

Physical Location & Seq

Genomic Coordinates Forward (+)

81926912 .. 81929597

Gene Structure 2686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G054260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2178 bp

ATGAGTATGAGAATAAAACTAGTACTTGTTGTGGTGGTTATATTGTTGGAGCATTATAATCATGGAGCAAAAGCAGCAGCAGACACCAATCCAAATCAACTGGAATTAGTCAAGCCAGGCTGCTCAGCCACCTGTGGATCTCTTGTCGTTCCATATCCTTTTGGTACTACCACGGGTTGTTACTTTAACGACGACTTTTTCATATCTTGTAACAATACAATTACAGGCGGCGGCTATGGAGGAAGTCCAAAAGCTTTTTTCAGAGGGAGAAGTGATTTCGTTATCCTCAACATATCGTTGGAGCGTCAAGAAATGAGAGTATCACGTTCGATGAGCAAATCTTGCCTTGAAGTTGACGAGACTGGCAATGTGACTTCATTTCCTAACGAAGACAACAACCCAGGTGTAATTGCCCCCAAAGCCTTTCGTATCTCAAGTAAGCGCAACAAGTTCACCACCGTCGGTTGCAACTTATTCGGGCTTATTCAGACTCTGGATCAAGCTATTAGCAGCAGCCCAGGCTCAAAGAAATACTCATCGGAGACATCCGCGCTGCGTGGATATATTGATGCTTGTGTATCAACGTGTACCATAGGAATCGAAAACGTGAAAAATGGAACTTGTCATCCGCATGGTGGCTGTTGCCAAACACCTATTGCAATCGGCGATATAAATCATTATACCACAAGTTTAGACACCATATCAGAAGATTTCCGATCAGTAAAATTATGTGGTTATGCTTTTGTCACAGAAGAAGAGGAGTTCAAGTTTTCCTCTTTGGATCTAATCAAAGGCCTAGATAACAGAAAAGCGGCCCCTTTGGTTCTCGATTGGGCTGTTCGGAATCACCTCAATTGTGCAGAAGCTCGGAGTCGTAAGGATTATGCATGCAAGGCAAAGTACAGCGACTGTCTCAATTCAACAAATGGACCTGGCTATATTTGCAAATGCCGCAAAGGTTACCAAGGCAATCCTTACCTCCTCCATGGATGCCAAGATATCAACGAGTGTGCGAGCGAGAAGTTAAATCCTTGCTCAAGCTCGGCCACATGCATCAACAACCCTGGAGGTGTCACCTGCACTTGCTCGGAAGGATACATAGGAGACGGAAAGGAAGCCGGAACTGGTTGCACCCATCAATTCAGTCAGCAACTAAAACTTCTTGTTATTGCATTTGGTATTTGCACGGGCATTTTGGTGCTAGTGATAGTAGGTTTTTGGATTTATTTGGTTATAAAGAGGAGAAGACTCATCAAACTCAAACGCATGTTCTTTGAACAAAACGGTGGAGTTTTGTTACAACAACACCTCAACTTGTCCCGTCATAAACCATCCATTGAGATAATGAAAATATTTAGTTCAGAAGAGCTCATAAAGGCTACCAACAATTACGACAAGAGTAACATTCTTGGCCAAGGAGGCAATGGAACAGTTTACAAGGGAGTCCTACGAGGCAACAAAATTGTAGCCATAAAAAGGTCCAAGGCTTGTGACCGAAGCCAAATTGGAGAATTCATCAACGAGGGAATTGTGCTTTCCCAAGTCAATCACCGCAATGTGGTTAAACTATTGGGTTGTTGTTTGGAGACAGAAGTTCCAGTGCTTCCGTTGTCAATTACATTGTCATGGCAAATGCGTCTCAAAATCGCAGCTGAAATTGCTGGAGCGCTTGCATACTTGCACTCTGAAACTTGCATGCCAATTATACATAGAGATGTGAAGACTTCTAATATACTGTTAGATGATAATTTCACAGCGAAGGTCGCCGATTTTGGAGCTTCAAGGCTTGTTCCTCTTGGTCAAACTCAATTGACCACTTTATTGCAAGGAACAATTGGATATTTAGATCCAGAATACTTGTATAATAGCCAGTTGACAGATAAAAGTGATGTTTTTAGTTTTGGAGTTATTCTAGCGGAGCTACTAACAGGAAAGACGCCATTAATATTCGAAGAGGGTCGAAAAGCAACGGTCAACTTGGCAGTGTACTTTGTTTCTTGTGTGGAAGAGGAAAGCTTGCATGAAATTCTCGACGATCAAGTGGCCATGGATGATCAAGTCTTTGAGGTGCTAAAGCAAGTGGCTAGCGTTGCGGTGATGTGTTTGAGGACAAAAAGGGAGGAAAGACCTGCTATGAAGGAAGTTGCAGCAGAGCTAGAAATATTGTCAAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

725

Amino Acids

79.55

Weight (kDa)

7.63

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	41 - 109	6.5e-08	Wall-associated receptor kinase galacturonan-binding
EGF_CA	PF07645	333 - 372	5.1e-07	Calcium-binding EGF domain
EGF_3	PF12947	341 - 371	5.4e-07	EGF domain
EGF	PF00008	343 - 369	2e-06	EGF-like domain
Pkinase	PF00069	464 - 716	1.3e-36	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	468 - 719	4.8e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca	FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica	MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica	Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis	pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis	RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata	RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora	Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa	Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha	Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana	Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	57, 1235
AarI	CACCTGC	1 cut(s)	1085
Acc36I	ACCTGC	2 cut(s)	1085, 2137
AccII	CGCG	1 cut(s)	551
AciI	CCGC	9 cut(s)	228, 231, 549, 629, 812, 952, 1552, 1916, 2093
AclWI	GGATC	4 cut(s)	145, 504, 789, 1841
AcoI	YGGCCR	3 cut(s)	1044, 1411, 2043
AcsI	RAATTY	2 cut(s)	1511, 2025
AcyI	GRCGYC	1 cut(s)	1937
AfaI	GTAC	5 cut(s)	24, 166, 589, 902, 1988
AfeI	AGCGCT	1 cut(s)	1668
AfiI	CCNNNNNNNGG	3 cut(s)	635, 1476, 1558
AflIII	ACRYGT	1 cut(s)	584
AgsI	TTSAA	5 cut(s)	350, 766, 921, 1277, 1782
AhlI	ACTAGT	1 cut(s)	19
AjnI	CCWGG	5 cut(s)	115, 400, 517, 931, 1063
AloI	GAACNNNNNNTCC	2 cut(s)	610, 642
Alw21I	GWGCWC	1 cut(s)	1371
Alw26I	GTCTC	6 cut(s)	353, 536, 917, 1098, 1580, 1643
AlwI	GGATC	4 cut(s)	145, 504, 789, 1841
AlwNI	CAGNNNCTG	2 cut(s)	493, 909
Aor51HI	AGCGCT	1 cut(s)	1668
AoxI	GGCC	5 cut(s)	793, 813, 1044, 1411, 2043
ApeKI	GCWGC	8 cut(s)	74, 77, 120, 510, 513, 553, 1649, 2147
ApoI	RAATTY	2 cut(s)	1511, 2025
AseI	ATTAAT	1 cut(s)	1943
AspLEI	GCGC	3 cut(s)	444, 553, 1669
AspS9I	GGNCC	3 cut(s)	814, 929, 1479
AsuHPI	GGTGA	5 cut(s)	445, 839, 1066, 1541, 2107
AsuII	TTCGAA	1 cut(s)	1950
AsuNHI	GCTAGC	1 cut(s)	2084
AvaII	GGWCC	2 cut(s)	929, 1479
BalI	TGGCCA	2 cut(s)	1413, 2045
BanII	GRGCYC	1 cut(s)	1371
BbsI	GAAGAC	3 cut(s)	396, 1252, 1727
Bbv12I	GWGCWC	1 cut(s)	1371
BbvI	GCAGC	8 cut(s)	86, 89, 107, 522, 525, 540, 1661, 2159
BccI	CCATC	2 cut(s)	1143, 1339
BcgI	CGANNNNNNTGC	2 cut(s)	457, 491
BciT130I	CCWGG	5 cut(s)	117, 402, 519, 933, 1065
BciVI	GTATCC	1 cut(s)	1088
BclI	TGATCA	1 cut(s)	2053
BcoDI	GTCTC	6 cut(s)	353, 536, 917, 1098, 1580, 1643
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	6 cut(s)	20, 797, 1202, 1913, 2085, 2156
BfoI	RGCGCY	1 cut(s)	1670
BfuAI	ACCTGC	2 cut(s)	1085, 2137
BfuI	GTATCC	1 cut(s)	1088
BglI	GCCNNNNNGGC	1 cut(s)	1419
BlpI	GCTNAGC	1 cut(s)	124
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	5 cut(s)	117, 402, 519, 933, 1065
Bme18I	GGWCC	2 cut(s)	929, 1479
BmgT120I	GGNCC	3 cut(s)	814, 929, 1479
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	5 cut(s)	117, 402, 519, 933, 1065
BmsI	GCATC	3 cut(s)	559, 980, 1062
BmtI	GCTAGC	1 cut(s)	2088
BpiI	GAAGAC	3 cut(s)	396, 1252, 1727
BpmI	CTGGAG	2 cut(s)	1086, 1683
Bpu1102I	GCTNAGC	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	1950
BpuEI	CTTGAG	2 cut(s)	418, 1021
BsaBI	GATNNNNATC	1 cut(s)	672
BsaHI	GRCGYC	1 cut(s)	1937
BsaJI	CCNNGG	9 cut(s)	171, 400, 517, 964, 985, 1063, 1414, 1482, 2046
BsaXI	ACNNNNNCTCC	2 cut(s)	752, 782
Bsc4I	CCNNNNNNNGG	3 cut(s)	635, 1476, 1558
Bse1I	ACTGG	5 cut(s)	105, 367, 1129, 1598, 1870
Bse3DI	GCAATG	3 cut(s)	373, 1429, 1561
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	5 cut(s)	117, 402, 519, 933, 1065
BseDI	CCNNGG	9 cut(s)	171, 400, 517, 964, 985, 1063, 1414, 1482, 2046
BseGI	GGATG	5 cut(s)	545, 625, 995, 1331, 2056
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	3 cut(s)	635, 1476, 1558
BseMI	GCAATG	3 cut(s)	373, 1429, 1561
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	5 cut(s)	105, 367, 1129, 1598, 1870
BseRI	GAGGAG	3 cut(s)	773, 971, 1255
BseXI	GCAGC	8 cut(s)	86, 89, 107, 522, 525, 540, 1661, 2159
BsgI	GTGCAG	2 cut(s)	879, 1063
Bsh1236I	CGCG	1 cut(s)	551
BshFI	GGCC	5 cut(s)	795, 815, 1046, 1413, 2045
BsiHKAI	GWGCWC	1 cut(s)	1371
BsiSI	CCGG	1 cut(s)	1119
BslFI	GGGAC	1 cut(s)	1303
BslI	CCNNNNNNNGG	3 cut(s)	635, 1476, 1558
BsmAI	GTCTC	6 cut(s)	353, 536, 917, 1098, 1580, 1643
BsmBI	CGTCTC	2 cut(s)	1098, 1643
BsmFI	GGGAC	1 cut(s)	1303
BsnI	GGCC	5 cut(s)	795, 815, 1046, 1413, 2045
Bsp119I	TTCGAA	1 cut(s)	1950
Bsp1286I	GDGCHC	1 cut(s)	1371
Bsp143I	GATC	7 cut(s)	137, 496, 716, 781, 1846, 2035, 2053
Bsp1720I	GCTNAGC	1 cut(s)	124
Bsp19I	CCATGG	2 cut(s)	985, 2046
BspACI	CCGC	9 cut(s)	228, 231, 549, 629, 812, 952, 1552, 1916, 2093
BspANI	GGCC	5 cut(s)	795, 815, 1046, 1413, 2045
BspCNI	CTCAG	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	551
BspLI	GGNNCC	1 cut(s)	816
BspMI	ACCTGC	2 cut(s)	1085, 2137
BspOI	GCTAGC	1 cut(s)	2088
BspPI	GGATC	4 cut(s)	145, 504, 789, 1841
BspQI	GCTCTTC	1 cut(s)	1359
BspT104I	TTCGAA	1 cut(s)	1950
BsrDI	GCAATG	3 cut(s)	373, 1429, 1561
BsrI	ACTGG	5 cut(s)	105, 367, 1129, 1598, 1870
BssECI	CCNNGG	9 cut(s)	171, 400, 517, 964, 985, 1063, 1414, 1482, 2046
BssMI	GATC	7 cut(s)	137, 496, 716, 781, 1846, 2035, 2053
BssNI	GRCGYC	1 cut(s)	1937
BssT1I	CCWWGG	5 cut(s)	964, 985, 1414, 1482, 2046
Bst2UI	CCWGG	5 cut(s)	117, 402, 519, 933, 1065
Bst4CI	ACNGT	6 cut(s)	460, 911, 1286, 1432, 1737, 1972
Bst6I	CTCTTC	4 cut(s)	750, 1359, 1947, 2001
BstACI	GRCGYC	1 cut(s)	1937
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstBI	TTCGAA	1 cut(s)	1950
BstC8I	GCNNGC	6 cut(s)	889, 1015, 1671, 1697, 2018, 2086
BstDEI	CTNAG	1 cut(s)	124
BstDSI	CCRYGG	3 cut(s)	171, 985, 2046
BstEII	GGTNACC	1 cut(s)	959
BstF5I	GGATG	5 cut(s)	545, 625, 995, 1331, 2056
BstFNI	CGCG	1 cut(s)	551
BstH2I	RGCGCY	1 cut(s)	1670
BstHHI	GCGC	3 cut(s)	444, 553, 1669
BstKTI	GATC	7 cut(s)	140, 499, 719, 784, 1849, 2038, 2056
BstMAI	GTCTC	6 cut(s)	353, 536, 917, 1098, 1580, 1643
BstMBI	GATC	7 cut(s)	137, 496, 716, 781, 1846, 2035, 2053
BstNI	CCWGG	5 cut(s)	117, 402, 519, 933, 1065
BstNSI	RCATGY	4 cut(s)	891, 1053, 1270, 1699
BstPI	GGTNACC	1 cut(s)	959
BstSCI	CCNGG	5 cut(s)	115, 400, 517, 931, 1063
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	8 cut(s)	86, 89, 107, 522, 525, 540, 1661, 2159
BstV2I	GAAGAC	3 cut(s)	396, 1252, 1727
BstX2I	RGATCY	3 cut(s)	137, 781, 1846
BstYI	RGATCY	3 cut(s)	137, 781, 1846
BsuI	GTATCC	1 cut(s)	1088
BsuRI	GGCC	5 cut(s)	795, 815, 1046, 1413, 2045
BtgI	CCRYGG	3 cut(s)	171, 985, 2046
BtsCI	GGATG	5 cut(s)	545, 625, 995, 1331, 2056
BtsI	GCAGTG	1 cut(s)	1989
BtsIMutI	CAGTG	2 cut(s)	1605, 1989
BveI	ACCTGC	2 cut(s)	1085, 2137
Cac8I	GCNNGC	6 cut(s)	889, 1015, 1671, 1697, 2018, 2086
CaiI	CAGNNNCTG	2 cut(s)	493, 909
CfoI	GCGC	3 cut(s)	444, 553, 1669
Cfr13I	GGNCC	3 cut(s)	814, 929, 1479
CseI	GACGC	3 cut(s)	293, 1625, 1945
Csp6I	GTAC	5 cut(s)	23, 165, 588, 901, 1987
CviQI	GTAC	5 cut(s)	23, 165, 588, 901, 1987
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	7 cut(s)	139, 498, 718, 783, 1848, 2037, 2055
DpnII	GATC	7 cut(s)	137, 496, 716, 781, 1846, 2035, 2053
EaeI	YGGCCR	3 cut(s)	1044, 1411, 2043
Eam1104I	CTCTTC	4 cut(s)	750, 1359, 1947, 2001
EarI	CTCTTC	4 cut(s)	750, 1359, 1947, 2001
Ecl136II	GAGCTC	1 cut(s)	1369
Eco130I	CCWWGG	5 cut(s)	964, 985, 1414, 1482, 2046
Eco147I	AGGCCT	1 cut(s)	795
Eco24I	GRGCYC	1 cut(s)	1371
Eco32I	GATATC	1 cut(s)	1000
Eco47I	GGWCC	2 cut(s)	929, 1479
Eco47III	AGCGCT	1 cut(s)	1668
Eco53kI	GAGCTC	1 cut(s)	1369
Eco91I	GGTNACC	1 cut(s)	959
EcoICRI	GAGCTC	1 cut(s)	1369
EcoO65I	GGTNACC	1 cut(s)	959
EcoRI	GAATTC	1 cut(s)	1511
EcoRII	CCWGG	5 cut(s)	115, 400, 517, 931, 1063
EcoRV	GATATC	1 cut(s)	1000
EcoT14I	CCWWGG	5 cut(s)	964, 985, 1414, 1482, 2046
EcoT22I	ATGCAT	2 cut(s)	889, 1055
EcoT38I	GRGCYC	1 cut(s)	1371
ErhI	CCWWGG	5 cut(s)	964, 985, 1414, 1482, 2046
Esp3I	CGTCTC	2 cut(s)	1098, 1643
FaqI	GGGAC	1 cut(s)	1303
FbaI	TGATCA	1 cut(s)	2053
FokI	GGATG	5 cut(s)	532, 612, 1002, 1318, 2063
FriOI	GRGCYC	1 cut(s)	1371
FspBI	CTAG	6 cut(s)	20, 797, 1202, 1913, 2085, 2156
GlaI	GCGC	3 cut(s)	443, 552, 1668
GsuI	CTGGAG	2 cut(s)	1086, 1683
HaeII	RGCGCY	1 cut(s)	1670
HaeIII	GGCC	5 cut(s)	795, 815, 1046, 1413, 2045
HapII	CCGG	1 cut(s)	1119
HgaI	GACGC	3 cut(s)	293, 1625, 1945
HhaI	GCGC	3 cut(s)	444, 553, 1669
Hin1I	GRCGYC	1 cut(s)	1937
Hin6I	GCGC	3 cut(s)	442, 551, 1667
HinP1I	GCGC	3 cut(s)	442, 551, 1667
HincII	GTYRAC	3 cut(s)	355, 1875, 1975
HindII	GTYRAC	3 cut(s)	355, 1875, 1975
HindIII	AAGCTT	2 cut(s)	252, 2014
HinfI	GANTC	6 cut(s)	490, 597, 844, 871, 1248, 1443
HpaII	CCGG	1 cut(s)	1119
HphI	GGTGA	5 cut(s)	445, 839, 1066, 1541, 2107
Hpy166II	GTNNAC	7 cut(s)	355, 453, 588, 1435, 1875, 1975, 1987
Hpy188III	TCNNGA	5 cut(s)	308, 494, 827, 1850, 2030
Hpy8I	GTNNAC	7 cut(s)	355, 453, 588, 1435, 1875, 1975, 1987
Hpy99I	CGWCG	3 cut(s)	194, 464, 2036
HpyAV	CCTTC	3 cut(s)	1085, 1753, 2131
HpyCH4III	ACNGT	6 cut(s)	460, 911, 1286, 1432, 1737, 1972
HpyCH4IV	ACGT	3 cut(s)	325, 584, 606
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	3 cut(s)	325, 584, 606
Hsp92I	GRCGYC	1 cut(s)	1937
HspAI	GCGC	3 cut(s)	442, 551, 1667
Ksp22I	TGATCA	1 cut(s)	2053
Kzo9I	GATC	7 cut(s)	137, 496, 716, 781, 1846, 2035, 2053
LguI	GCTCTTC	1 cut(s)	1359
LmnI	GCTCC	6 cut(s)	49, 65, 301, 1664, 1775, 1918
Lsp1109I	GCAGC	8 cut(s)	86, 89, 107, 522, 525, 540, 1661, 2159
LweI	GCATC	3 cut(s)	559, 980, 1062
MaeI	CTAG	6 cut(s)	20, 797, 1202, 1913, 2085, 2156
MaeII	ACGT	3 cut(s)	325, 584, 606
MaeIII	GTNAC	9 cut(s)	179, 209, 370, 745, 959, 1072, 1296, 1400, 1490
MalI	GATC	7 cut(s)	139, 498, 718, 783, 1848, 2037, 2055
MboI	GATC	7 cut(s)	137, 496, 716, 781, 1846, 2035, 2053
MboII	GAAGA	9 cut(s)	401, 719, 764, 767, 1257, 1376, 1732, 1964, 2018
MfeI	CAATTG	3 cut(s)	853, 1808, 1833
MflI	RGATCY	3 cut(s)	137, 781, 1846
MhlI	GDGCHC	1 cut(s)	1371
MlsI	TGGCCA	2 cut(s)	1413, 2045
MluNI	TGGCCA	2 cut(s)	1413, 2045
MlyI	GAGTC	4 cut(s)	484, 880, 1242, 1452
MmeI	TCCRAC	2 cut(s)	27, 279
Mox20I	TGGCCA	2 cut(s)	1413, 2045
Mph1103I	ATGCAT	2 cut(s)	889, 1055
MscI	TGGCCA	2 cut(s)	1413, 2045
MseI	TTAA	4 cut(s)	186, 1025, 1563, 1943
MslI	CAYNNNNRTG	5 cut(s)	630, 1196, 1554, 1624, 1713
Msp20I	TGGCCA	2 cut(s)	1413, 2045
MspA1I	CMGCKG	1 cut(s)	1652
MspI	CCGG	1 cut(s)	1119
MspR9I	CCNGG	5 cut(s)	117, 402, 519, 933, 1065
MunI	CAATTG	3 cut(s)	853, 1808, 1833
MvaI	CCWGG	5 cut(s)	117, 402, 519, 933, 1065
MvnI	CGCG	1 cut(s)	551
NcoI	CCATGG	2 cut(s)	985, 2046
NdeII	GATC	7 cut(s)	137, 496, 716, 781, 1846, 2035, 2053
NheI	GCTAGC	1 cut(s)	2084
NlaIV	GGNNCC	1 cut(s)	816
NmeAIII	GCCGAG	1 cut(s)	1022
NmuCI	GTSAC	4 cut(s)	370, 745, 1072, 1490
NsiI	ATGCAT	2 cut(s)	889, 1055
NspI	RCATGY	4 cut(s)	891, 1053, 1270, 1699
NspV	TTCGAA	1 cut(s)	1950
PaeI	GCATGC	2 cut(s)	891, 1699
PaqCI	CACCTGC	1 cut(s)	1085
PceI	AGGCCT	1 cut(s)	795
PciSI	GCTCTTC	1 cut(s)	1359
PfeI	GAWTC	2 cut(s)	597, 844
PleI	GAGTC	4 cut(s)	484, 879, 1242, 1451
PpsI	GAGTC	4 cut(s)	484, 879, 1242, 1451
PshBI	ATTAAT	1 cut(s)	1943
PsiI	TTATAA	2 cut(s)	57, 1235
Psp124BI	GAGCTC	1 cut(s)	1371
Psp6I	CCWGG	5 cut(s)	115, 400, 517, 931, 1063
PspEI	GGTNACC	1 cut(s)	959
PspGI	CCWGG	5 cut(s)	115, 400, 517, 931, 1063
PspN4I	GGNNCC	1 cut(s)	816
PspPI	GGNCC	3 cut(s)	814, 929, 1479
PstNI	CAGNNNCTG	2 cut(s)	493, 909
PsuI	RGATCY	3 cut(s)	137, 781, 1846
PvuII	CAGCTG	1 cut(s)	1652
RsaI	GTAC	5 cut(s)	24, 166, 589, 902, 1988
RsaNI	GTAC	5 cut(s)	23, 165, 588, 901, 1987
RseI	CAYNNNNRTG	5 cut(s)	630, 1196, 1554, 1624, 1713
SacI	GAGCTC	1 cut(s)	1371
SapI	GCTCTTC	1 cut(s)	1359
SaqAI	TTAA	4 cut(s)	186, 1025, 1563, 1943
Sau3AI	GATC	7 cut(s)	137, 496, 716, 781, 1846, 2035, 2053
Sau96I	GGNCC	3 cut(s)	814, 929, 1479
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	4 cut(s)	484, 880, 1242, 1452
ScrFI	CCNGG	5 cut(s)	117, 402, 519, 933, 1065
SduI	GDGCHC	1 cut(s)	1371
SfaNI	GCATC	3 cut(s)	559, 980, 1062
SfuI	TTCGAA	1 cut(s)	1950
SinI	GGWCC	2 cut(s)	929, 1479
SmiMI	CAYNNNNRTG	5 cut(s)	630, 1196, 1554, 1624, 1713
SmlI	CTYRAG	2 cut(s)	433, 1036
SmoI	CTYRAG	2 cut(s)	433, 1036
SpeI	ACTAGT	1 cut(s)	19
SphI	GCATGC	2 cut(s)	891, 1699
SseBI	AGGCCT	1 cut(s)	795
SsiI	CCGC	9 cut(s)	228, 231, 549, 629, 812, 952, 1552, 1916, 2093
SspI	AATATT	3 cut(s)	1353, 1947, 2163
SspMI	CTAG	6 cut(s)	20, 797, 1202, 1913, 2085, 2156
SstI	GAGCTC	1 cut(s)	1371
StuI	AGGCCT	1 cut(s)	795
StyD4I	CCNGG	5 cut(s)	115, 400, 517, 931, 1063
StyI	CCWWGG	5 cut(s)	964, 985, 1414, 1482, 2046
TaaI	ACNGT	6 cut(s)	460, 911, 1286, 1432, 1737, 1972
TaiI	ACGT	3 cut(s)	328, 587, 609
TaqI	TCGA	6 cut(s)	329, 600, 828, 1950, 1960, 2031
TaqII	GACCGA	1 cut(s)	1509
TatI	WGTACW	3 cut(s)	22, 900, 1986
TauI	GCSGC	4 cut(s)	231, 234, 815, 954
TfiI	GAWTC	2 cut(s)	597, 844
Tru1I	TTAA	4 cut(s)	186, 1025, 1563, 1943
Tru9I	TTAA	4 cut(s)	186, 1025, 1563, 1943
TscAI	CASTG	2 cut(s)	1605, 1989
TseFI	GTSAC	4 cut(s)	370, 745, 1072, 1490
TseI	GCWGC	8 cut(s)	74, 77, 120, 510, 513, 553, 1649, 2147
Tsp45I	GTSAC	4 cut(s)	370, 745, 1072, 1490
TspDTI	ATGAA	6 cut(s)	190, 366, 1361, 1504, 2037, 2150
TspGWI	ACGGA	2 cut(s)	1122, 1596
TspRI	CASTG	2 cut(s)	1605, 1989
VpaK11BI	GGWCC	2 cut(s)	929, 1479
VspI	ATTAAT	1 cut(s)	1943
XapI	RAATTY	2 cut(s)	1511, 2025
XceI	RCATGY	4 cut(s)	891, 1053, 1270, 1699
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1421
XspI	CTAG	6 cut(s)	20, 797, 1202, 1913, 2085, 2156
ZrmI	AGTACT	1 cut(s)	24
Zsp2I	ATGCAT	2 cut(s)	889, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.