Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000066

Physical Location & Seq

Genomic Coordinates Reverse (-)

54760455 .. 54763123

Gene Structure 2669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG344600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGGGAATGCGTATGAGGGTTCATAGAGAAACTGCAATAGTGCCGCCGCCAGTGCATGGACACCAACTCCTTCGAGTACTTGTAGAGGTGATGATCATGATGAATATCACCATCTATGAAAACACATCACAAGCCAAAGCAGATGCATCATCCCCTAAACTCCGATCTAAGGGATGCTCAGCCACTTGTGGGTCTCTTAGCATCCCTTTTCCTTTCGGCACATCCCCGGGTTGTTACTTTGACGAAAACTTTTTCGTCTCCTGTAATACCACTACAAATAAAGCATTTCTCCGAGGAAGAAACAATGATTTAGCTATCCTCCACATATCACTGGAGGATCACGAACTGCGTGTGTCTAGCCCCGTGACGAAAGCCTGCTTTGATGAGCAGGGGAGTCCTCTCAAAAGGTGGATTACAGGGGAAGATGGAAGGGTAGAAACTCCCATGGTGACACCCTCCGACTACTTTTACATCTCAAGTACAAGAAACAAGTTCACTACTATTGGTTGCAATACAAGCGCGATAATCGTGACCAGCACCCCTAGAGATTTGGGCAACAACAATGCAGATTTGGGATCGACGTACCTGGACTCTTGTGCATCTTTGTGTCTTCCAGGAGTCAAGAAGGTGAAGAATGGAACTTGCGACCACCTTAGTGGATGTTGCCAGAAATCTATCACAATCAAAGGCCTGACAAATTATGCGATTTCATATGGGAGTAGGAAGGAAGTAATTCGAAACAGAAATAGGTCAATATTAGCAATGGTACCACCTACATGTGCTTATGCTTTTGTTGTAGAAGCAGATACCTTTGAGTTTTCCTCTTTAGATCTTCAACAAGGCATACACAACCGTGACGCTGTCCCTATGGTGCTCAATTGGGTTGTTGGGAATTACAATACATGTCAAGAGGCTCAGTCATCGTCGTCTACTCCCAGTAGTAACATAACTTATGCATGTCGCGCAAAGAATAGCGAATGTCACAACTCAACCAGCGGACCTGGCTATCTCTGCAAATGCCGCGAAGGTTACCAAGGGAACCCTTACATCCTTGATGGTTGCCAAGACATTGACGAGTGTGAGCGTGAGCGCGAGCTCATAAACCCGTGTCAGCTCAGCAAAATGCATCAACAATCCTCGAAGTGTTTATTGCATTTGTCCAGATGGATGCAAAGGAAATGGCAAGAAAAGCGGAACTGGTTGCAGCATCAATATCTACAACTTATTCTTGCATTTGGTATTTGCATAAGCATCTTGGTGCTCCTTGGAGTAGGTTTTCGGATTTGCTGGGCATCAAAGAAAAGAAAACTCGTCCAACTGAAAATGAAGTTCCTTAAACAAAATGGTGGAATTTTGTCGCAACAACTGCTCTCTTGTGAGAGAGCCCTCGAGATGATAAAAATTTTTAGTGCAGAGGAGCTCAAAAAGGCGACAAATAGTTACAACGAGGGTGTGGTTCTTGGCAAAGGAGGCAACGGAAGAGTTTACAAGGGACTTTTACGAGGTAAGAAAGTGGTTGCCATTAAGAAGTCTAAGGTTTGTGACAGGAGCCAAATCGAGCAGTTCATTAACGAGTTGATTATTCTTTTCCAAGTCAATCACCCCAATGTTGTCAAGTTATTGGGTTGCTGCTTGGAGACTGAAGTCCCCATACTAGTTTACGAGTTCATCACGAAAGGTACTCTTTCAAGCCATCTTCACTCGTCCTCAATTAGACTGTCATGGCAAATCCGCCTTAAAATTGCGAAGGAAGTTGCAGCAGCACTTGCATACTTGCACTCCGAGACTTCTATCCCTATCATACATAGAGATGTAAAGTCAGCCAATGTACTGCTGGATGACAACTTCACGGCAAAGATTTCCGACTTTGGAGCTTCGAAGCTAACTCCTATCGGTCAAACTCAAATAACCACACTGGTGCAGGGCACGTACGGTTACTTTGATCCAGAATACTTCTGTAGTGGCATACTAACAGAAAAGAGTGATGTCTATGGTTATGGAGTCGTGCTGGCAGAGCTACTCACAGCCAAGGAGGCACTGTTTTGGAATAGTTCAGGGAGTAGAATAAACCTAGCATTCTACTTTGTTTCTTCAGTGAAAGAGGATCGCTTGGTCGAAATTCTTGATGATCAAGTAGGTGTCGACCAAGAAATCATTGAGTTACTAACGGAAGTTGCTAGCCTTGCAGTAACGTGTTTAAGGGAGCGAGGAGATGAAAGACCTACTATGAAGGAAGTCCAAACAGAGCTAGAAGGACTAAGCCCACTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

757

Amino Acids

84.35

Weight (kDa)

8.44

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	59 - 119	4.3e-10	Wall-associated receptor kinase galacturonan-binding
Pkinase	PF00069	481 - 747	2e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	486 - 750	8.7e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca	FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica	MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica	Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis	pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis	RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata	RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora	Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa	Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha	Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana	Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	766
AccB1I	GGYRCC	1 cut(s)	766
AccB7I	CCANNNNNTGG	1 cut(s)	56
AccI	GTMKAC	2 cut(s)	929, 2142
AccII	CGCG	4 cut(s)	521, 963, 1023, 1092
AciI	CCGC	6 cut(s)	44, 47, 996, 1021, 1192, 1732
AclWI	GGATC	4 cut(s)	345, 583, 1937, 2112
AcsI	RAATTY	3 cut(s)	1350, 1401, 2118
AcuI	CTGAAG	2 cut(s)	1662, 2076
AfaI	GTAC	7 cut(s)	78, 481, 584, 768, 1681, 1830, 1931
AfiI	CCNNNNNNNGG	3 cut(s)	56, 169, 189
AflIII	ACRYGT	3 cut(s)	776, 902, 2192
AgsI	TTSAA	2 cut(s)	836, 1689
AhlI	ACTAGT	1 cut(s)	1654
AjnI	CCWGG	3 cut(s)	585, 613, 1000
AleI	CACNNNNGTG	3 cut(s)	654, 852, 1916
AluBI	AGCT	8 cut(s)	314, 1096, 1114, 1420, 1874, 1882, 2017, 2248
AluI	AGCT	8 cut(s)	314, 1096, 1114, 1420, 1874, 1882, 2017, 2248
Alw21I	GWGCWC	4 cut(s)	876, 1098, 1263, 1422
Alw26I	GTCTC	4 cut(s)	198, 262, 1631, 1778
AlwI	GGATC	4 cut(s)	345, 583, 1937, 2112
Ama87I	CYCGRG	2 cut(s)	226, 1388
AoxI	GGCC	1 cut(s)	688
ApeKI	GCWGC	4 cut(s)	1204, 1629, 1757, 1760
ApoI	RAATTY	3 cut(s)	1350, 1401, 2118
Asp700I	GAANNNNTTC	1 cut(s)	732
Asp718I	GGTACC	1 cut(s)	766
AspLEI	GCGC	3 cut(s)	521, 965, 1092
AspS9I	GGNCC	1 cut(s)	998
AsuC2I	CCSGG	2 cut(s)	227, 228
AsuHPI	GGTGA	5 cut(s)	100, 100, 460, 640, 1592
AsuII	TTCGAA	2 cut(s)	736, 1877
AsuNHI	GCTAGC	1 cut(s)	2177
AvaI	CYCGRG	2 cut(s)	226, 1388
AvaII	GGWCC	1 cut(s)	998
BaeGI	GKGCMC	1 cut(s)	1928
BanI	GGYRCC	1 cut(s)	766
BanII	GRGCYC	3 cut(s)	1098, 1387, 1422
BarI	GAAGNNNNNNTAC	2 cut(s)	1635, 1667
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	4 cut(s)	876, 1098, 1263, 1422
BbvI	GCAGC	4 cut(s)	1216, 1616, 1769, 1772
BccI	CCATC	5 cut(s)	119, 419, 1049, 1158, 1701
BceAI	ACGGC	1 cut(s)	1866
BciT130I	CCWGG	3 cut(s)	587, 615, 1002
BclI	TGATCA	2 cut(s)	93, 2128
BcnI	CCSGG	2 cut(s)	227, 228
BcoDI	GTCTC	4 cut(s)	198, 262, 1631, 1778
BcuI	ACTAGT	1 cut(s)	1654
BfaI	CTAG	6 cut(s)	357, 543, 1655, 2072, 2178, 2249
BfmI	CTRYAG	1 cut(s)	1957
BglI	GCCNNNNNGGC	1 cut(s)	2033
BglII	AGATCT	1 cut(s)	829
BisI	GCNGC	7 cut(s)	44, 47, 1021, 1205, 1630, 1758, 1761
BlpI	GCTNAGC	2 cut(s)	178, 1115
BlsI	GCNGC	7 cut(s)	45, 48, 1022, 1206, 1631, 1759, 1762
BmcAI	AGTACT	1 cut(s)	78
Bme1390I	CCNGG	5 cut(s)	227, 228, 587, 615, 1002
Bme18I	GGWCC	1 cut(s)	998
BmeT110I	CYCGRG	2 cut(s)	226, 1388
BmgT120I	GGNCC	1 cut(s)	998
BmiI	GGNNCC	3 cut(s)	768, 1040, 1550
BmrFI	CCNGG	5 cut(s)	227, 228, 587, 615, 1002
BmrI	ACTGGG	1 cut(s)	930
BmtI	GCTAGC	1 cut(s)	2181
BmuI	ACTGGG	1 cut(s)	930
BoxI	GACNNNNGTC	1 cut(s)	1643
BpiI	GAAGAC	1 cut(s)	602
BplI	GAGNNNNNCTC	2 cut(s)	806, 838
BpmI	CTGGAG	1 cut(s)	353
Bpu1102I	GCTNAGC	2 cut(s)	178, 1115
Bpu14I	TTCGAA	2 cut(s)	736, 1877
BpuEI	CTTGAG	1 cut(s)	460
BpuMI	CCSGG	2 cut(s)	227, 228
BsaAI	YACGTR	1 cut(s)	1929
BsaBI	GATNNNNATC	1 cut(s)	104
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	7 cut(s)	225, 226, 292, 444, 1033, 1264, 2028
BsaXI	ACNNNNNCTCC	6 cut(s)	51, 81, 1763, 1793, 2024, 2054
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 169, 189
Bse1I	ACTGG	5 cut(s)	50, 336, 936, 1202, 1920
Bse3DI	GCAATG	1 cut(s)	768
Bse8I	GATNNNNATC	1 cut(s)	104
BseBI	CCWGG	3 cut(s)	587, 615, 1002
BseDI	CCNNGG	7 cut(s)	225, 226, 292, 444, 1033, 1264, 2028
BseGI	GGATG	8 cut(s)	149, 179, 201, 221, 665, 1047, 1173, 1843
BseJI	GATNNNNATC	1 cut(s)	104
BseLI	CCNNNNNNNGG	3 cut(s)	56, 169, 189
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	3 cut(s)	192, 929, 1129
BseNI	ACTGG	5 cut(s)	50, 336, 936, 1202, 1920
BseRI	GAGGAG	2 cut(s)	1430, 2223
BseSI	GKGCMC	1 cut(s)	1928
BseXI	GCAGC	4 cut(s)	1216, 1616, 1769, 1772
BseYI	CCCAGC	1 cut(s)	1287
BsgI	GTGCAG	2 cut(s)	1431, 1940
Bsh1236I	CGCG	4 cut(s)	521, 963, 1023, 1092
BshFI	GGCC	1 cut(s)	690
BshNI	GGYRCC	1 cut(s)	766
BsiHKAI	GWGCWC	4 cut(s)	876, 1098, 1263, 1422
BsiHKCI	CYCGRG	2 cut(s)	226, 1388
BsiSI	CCGG	1 cut(s)	227
BsiWI	CGTACG	1 cut(s)	1929
BslFI	GGGAC	3 cut(s)	848, 1506, 1631
BslI	CCNNNNNNNGG	3 cut(s)	56, 169, 189
BsmAI	GTCTC	4 cut(s)	198, 262, 1631, 1778
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	3 cut(s)	848, 1506, 1631
BsmI	GAATGC	2 cut(s)	12, 2075
BsnI	GGCC	1 cut(s)	690
Bso31I	GGTCTC	1 cut(s)	198
BsoBI	CYCGRG	2 cut(s)	226, 1388
Bsp119I	TTCGAA	2 cut(s)	736, 1877
Bsp1286I	GDGCHC	6 cut(s)	876, 1098, 1263, 1387, 1422, 1928
Bsp143I	GATC	8 cut(s)	93, 164, 337, 575, 829, 1942, 2104, 2128
Bsp1720I	GCTNAGC	2 cut(s)	178, 1115
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	6 cut(s)	44, 47, 996, 1021, 1192, 1732
BspANI	GGCC	1 cut(s)	690
BspCNI	CTCAG	3 cut(s)	191, 928, 1128
BspFNI	CGCG	4 cut(s)	521, 963, 1023, 1092
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	3 cut(s)	768, 1040, 1550
BspOI	GCTAGC	1 cut(s)	2181
BspPI	GGATC	4 cut(s)	345, 583, 1937, 2112
BspT104I	TTCGAA	2 cut(s)	736, 1877
BspT107I	GGYRCC	1 cut(s)	766
BspTNI	GGTCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	768
BsrI	ACTGG	5 cut(s)	50, 336, 936, 1202, 1920
BssECI	CCNNGG	7 cut(s)	225, 226, 292, 444, 1033, 1264, 2028
BssMI	GATC	8 cut(s)	93, 164, 337, 575, 829, 1942, 2104, 2128
BssT1I	CCWWGG	4 cut(s)	444, 1033, 1264, 2028
Bst2UI	CCWGG	3 cut(s)	587, 615, 1002
Bst4CI	ACNGT	4 cut(s)	854, 1719, 1934, 2040
Bst6I	CTCTTC	1 cut(s)	1474
BstAPI	GCANNNNNTGC	2 cut(s)	1366, 1766
BstBAI	YACGTR	1 cut(s)	1929
BstBI	TTCGAA	2 cut(s)	736, 1877
BstC8I	GCNNGC	4 cut(s)	376, 1094, 2010, 2179
BstDEI	CTNAG	8 cut(s)	168, 178, 197, 653, 915, 1115, 1533, 2258
BstDSI	CCRYGG	1 cut(s)	444
BstEII	GGTNACC	1 cut(s)	1028
BstF5I	GGATG	8 cut(s)	149, 179, 201, 221, 665, 1047, 1173, 1843
BstFNI	CGCG	4 cut(s)	521, 963, 1023, 1092
BstHHI	GCGC	3 cut(s)	521, 965, 1092
BstKTI	GATC	8 cut(s)	96, 167, 340, 578, 832, 1945, 2107, 2131
BstMAI	GTCTC	4 cut(s)	198, 262, 1631, 1778
BstMBI	GATC	8 cut(s)	93, 164, 337, 575, 829, 1942, 2104, 2128
BstNI	CCWGG	3 cut(s)	587, 615, 1002
BstNSI	RCATGY	3 cut(s)	780, 906, 960
BstPAI	GACNNNNGTC	1 cut(s)	1643
BstPI	GGTNACC	1 cut(s)	1028
BstSCI	CCNGG	5 cut(s)	225, 226, 585, 613, 1000
BstSFI	CTRYAG	1 cut(s)	1957
BstSLI	GKGCMC	1 cut(s)	1928
BstUI	CGCG	4 cut(s)	521, 963, 1023, 1092
BstV1I	GCAGC	4 cut(s)	1216, 1616, 1769, 1772
BstV2I	GAAGAC	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	829
BstXI	CCANNNNNNTGG	1 cut(s)	656
BstYI	RGATCY	1 cut(s)	829
BsuRI	GGCC	1 cut(s)	690
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	8 cut(s)	149, 179, 201, 221, 665, 1047, 1173, 1843
BtsIMutI	CAGTG	5 cut(s)	57, 329, 1913, 2036, 2100
Cac8I	GCNNGC	4 cut(s)	376, 1094, 2010, 2179
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	3 cut(s)	521, 965, 1092
Cfr13I	GGNCC	1 cut(s)	998
Cfr9I	CCCGGG	1 cut(s)	226
CseI	GACGC	1 cut(s)	866
Csp6I	GTAC	7 cut(s)	77, 480, 583, 767, 1680, 1829, 1930
CviAII	CATG	7 cut(s)	56, 97, 445, 777, 903, 957, 1722
CviQI	GTAC	7 cut(s)	77, 480, 583, 767, 1680, 1829, 1930
DdeI	CTNAG	8 cut(s)	168, 178, 197, 653, 915, 1115, 1533, 2258
DpnI	GATC	8 cut(s)	95, 166, 339, 577, 831, 1944, 2106, 2130
DpnII	GATC	8 cut(s)	93, 164, 337, 575, 829, 1942, 2104, 2128
Eam1104I	CTCTTC	1 cut(s)	1474
EarI	CTCTTC	1 cut(s)	1474
EciI	GGCGGA	1 cut(s)	1721
Ecl136II	GAGCTC	2 cut(s)	1096, 1420
Eco130I	CCWWGG	4 cut(s)	444, 1033, 1264, 2028
Eco147I	AGGCCT	1 cut(s)	690
Eco24I	GRGCYC	3 cut(s)	1098, 1387, 1422
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	998
Eco53kI	GAGCTC	2 cut(s)	1096, 1420
Eco57I	CTGAAG	2 cut(s)	1662, 2076
Eco88I	CYCGRG	2 cut(s)	226, 1388
Eco91I	GGTNACC	1 cut(s)	1028
EcoICRI	GAGCTC	2 cut(s)	1096, 1420
EcoO65I	GGTNACC	1 cut(s)	1028
EcoRII	CCWGG	3 cut(s)	585, 613, 1000
EcoT14I	CCWWGG	4 cut(s)	444, 1033, 1264, 2028
EcoT22I	ATGCAT	3 cut(s)	148, 958, 1128
EcoT38I	GRGCYC	3 cut(s)	1098, 1387, 1422
ErhI	CCWWGG	4 cut(s)	444, 1033, 1264, 2028
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	7 cut(s)	59, 100, 448, 780, 906, 960, 1725
FalI	AAGNNNNNCTT	2 cut(s)	1668, 1700
FaqI	GGGAC	3 cut(s)	848, 1506, 1631
FatI	CATG	7 cut(s)	55, 96, 444, 776, 902, 956, 1721
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	2 cut(s)	93, 2128
FblI	GTMKAC	2 cut(s)	929, 2142
Fnu4HI	GCNGC	7 cut(s)	44, 47, 1021, 1205, 1630, 1758, 1761
FokI	GGATG	8 cut(s)	136, 186, 188, 208, 672, 1034, 1180, 1850
FriOI	GRGCYC	3 cut(s)	1098, 1387, 1422
Fsp4HI	GCNGC	7 cut(s)	44, 47, 1021, 1205, 1630, 1758, 1761
FspBI	CTAG	6 cut(s)	357, 543, 1655, 2072, 2178, 2249
GlaI	GCGC	3 cut(s)	520, 964, 1091
GluI	GCNGC	7 cut(s)	44, 47, 1021, 1205, 1630, 1758, 1761
GsaI	CCCAGC	1 cut(s)	1291
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	690
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	866
HhaI	GCGC	3 cut(s)	521, 965, 1092
Hin1II	CATG	7 cut(s)	59, 100, 448, 780, 906, 960, 1725
Hin6I	GCGC	3 cut(s)	519, 963, 1090
HinP1I	GCGC	3 cut(s)	519, 963, 1090
HincII	GTYRAC	1 cut(s)	2143
HindII	GTYRAC	1 cut(s)	2143
HinfI	GANTC	4 cut(s)	394, 590, 618, 2001
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	5 cut(s)	100, 100, 460, 640, 1592
Hpy166II	GTNNAC	5 cut(s)	495, 930, 1486, 1660, 2143
Hpy188I	TCNGA	6 cut(s)	164, 293, 460, 1281, 1783, 1864
Hpy8I	GTNNAC	5 cut(s)	495, 930, 1486, 1660, 2143
Hpy99I	CGWCG	2 cut(s)	583, 928
HpyAV	CCTTC	8 cut(s)	80, 423, 619, 718, 1019, 1741, 2224, 2246
HpyCH4III	ACNGT	4 cut(s)	854, 1719, 1934, 2040
HpyCH4IV	ACGT	3 cut(s)	581, 1928, 2192
HpyF3I	CTNAG	8 cut(s)	168, 178, 197, 653, 915, 1115, 1533, 2258
HpySE526I	ACGT	3 cut(s)	581, 1928, 2192
Hsp92II	CATG	7 cut(s)	59, 100, 448, 780, 906, 960, 1725
HspAI	GCGC	3 cut(s)	519, 963, 1090
KpnI	GGTACC	1 cut(s)	770
Ksp22I	TGATCA	2 cut(s)	93, 2128
Kzo9I	GATC	8 cut(s)	93, 164, 337, 575, 829, 1942, 2104, 2128
LmnI	GCTCC	5 cut(s)	1266, 1417, 1548, 1871, 2203
Lsp1109I	GCAGC	4 cut(s)	1216, 1616, 1769, 1772
MaeI	CTAG	6 cut(s)	357, 543, 1655, 2072, 2178, 2249
MaeII	ACGT	3 cut(s)	581, 1928, 2192
MalI	GATC	8 cut(s)	95, 166, 339, 577, 831, 1944, 2106, 2130
MboI	GATC	8 cut(s)	93, 164, 337, 575, 829, 1942, 2104, 2128
MboII	GAAGA	8 cut(s)	309, 434, 602, 643, 824, 1491, 1688, 2082
MfeI	CAATTG	1 cut(s)	877
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	6 cut(s)	876, 1098, 1263, 1387, 1422, 1928
MlyI	GAGTC	4 cut(s)	403, 584, 627, 2010
MmeI	TCCRAC	3 cut(s)	483, 1339, 1887
Mph1103I	ATGCAT	3 cut(s)	148, 958, 1128
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	7 cut(s)	1335, 1524, 1569, 1737, 2198, 2268, 2272
MslI	CAYNNNNRTG	8 cut(s)	604, 654, 775, 852, 1256, 1605, 1809, 1916
MspA1I	CMGCKG	1 cut(s)	996
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	5 cut(s)	227, 228, 587, 615, 1002
MunI	CAATTG	1 cut(s)	877
Mva1269I	GAATGC	2 cut(s)	12, 2075
MvaI	CCWGG	3 cut(s)	587, 615, 1002
MvnI	CGCG	4 cut(s)	521, 963, 1023, 1092
NciI	CCSGG	2 cut(s)	227, 228
NcoI	CCATGG	1 cut(s)	444
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	8 cut(s)	93, 164, 337, 575, 829, 1942, 2104, 2128
NheI	GCTAGC	1 cut(s)	2177
NlaIII	CATG	7 cut(s)	59, 100, 448, 780, 906, 960, 1725
NlaIV	GGNNCC	3 cut(s)	768, 1040, 1550
NmuCI	GTSAC	6 cut(s)	364, 448, 529, 854, 980, 1541
NsiI	ATGCAT	3 cut(s)	148, 958, 1128
NspI	RCATGY	3 cut(s)	780, 906, 960
NspV	TTCGAA	2 cut(s)	736, 1877
OliI	CACNNNNGTG	3 cut(s)	654, 852, 1916
PacI	TTAATTAA	1 cut(s)	2272
PaeR7I	CTCGAG	1 cut(s)	1388
PagI	TCATGA	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	690
PciI	ACATGT	2 cut(s)	776, 902
PctI	GAATGC	2 cut(s)	12, 2075
PdmI	GAANNNNTTC	1 cut(s)	732
Pfl23II	CGTACG	1 cut(s)	1929
PflFI	GACNNNGTC	1 cut(s)	860
PflMI	CCANNNNNTGG	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	613
PkrI	GCNGC	7 cut(s)	45, 48, 1022, 1206, 1631, 1759, 1762
PleI	GAGTC	4 cut(s)	402, 584, 626, 2009
PpsI	GAGTC	4 cut(s)	402, 584, 626, 2009
Ppu21I	YACGTR	1 cut(s)	1929
PscI	ACATGT	2 cut(s)	776, 902
PshAI	GACNNNNGTC	1 cut(s)	1643
Psp124BI	GAGCTC	2 cut(s)	1098, 1422
Psp6I	CCWGG	3 cut(s)	585, 613, 1000
PspEI	GGTNACC	1 cut(s)	1028
PspFI	CCCAGC	1 cut(s)	1287
PspGI	CCWGG	3 cut(s)	585, 613, 1000
PspLI	CGTACG	1 cut(s)	1929
PspN4I	GGNNCC	3 cut(s)	768, 1040, 1550
PspPI	GGNCC	1 cut(s)	998
PsuI	RGATCY	1 cut(s)	829
PsyI	GACNNNGTC	1 cut(s)	860
RsaI	GTAC	7 cut(s)	78, 481, 584, 768, 1681, 1830, 1931
RsaNI	GTAC	7 cut(s)	77, 480, 583, 767, 1680, 1829, 1930
RseI	CAYNNNNRTG	8 cut(s)	604, 654, 775, 852, 1256, 1605, 1809, 1916
SacI	GAGCTC	2 cut(s)	1098, 1422
SalI	GTCGAC	1 cut(s)	2141
SaqAI	TTAA	7 cut(s)	1335, 1524, 1569, 1737, 2198, 2268, 2272
SatI	GCNGC	7 cut(s)	44, 47, 1021, 1205, 1630, 1758, 1761
Sau3AI	GATC	8 cut(s)	93, 164, 337, 575, 829, 1942, 2104, 2128
Sau96I	GGNCC	1 cut(s)	998
ScaI	AGTACT	1 cut(s)	78
SchI	GAGTC	4 cut(s)	403, 584, 627, 2010
ScrFI	CCNGG	5 cut(s)	227, 228, 587, 615, 1002
SduI	GDGCHC	6 cut(s)	876, 1098, 1263, 1387, 1422, 1928
SfcI	CTRYAG	1 cut(s)	1957
Sfr274I	CTCGAG	1 cut(s)	1388
SfuI	TTCGAA	2 cut(s)	736, 1877
SinI	GGWCC	1 cut(s)	998
SlaI	CTCGAG	1 cut(s)	1388
SmaI	CCCGGG	1 cut(s)	228
SmiMI	CAYNNNNRTG	8 cut(s)	604, 654, 775, 852, 1256, 1605, 1809, 1916
SmlI	CTYRAG	2 cut(s)	475, 1388
SmoI	CTYRAG	2 cut(s)	475, 1388
SpeI	ACTAGT	1 cut(s)	1654
SseBI	AGGCCT	1 cut(s)	690
SsiI	CCGC	6 cut(s)	44, 47, 996, 1021, 1192, 1732
SspI	AATATT	1 cut(s)	756
SspMI	CTAG	6 cut(s)	357, 543, 1655, 2072, 2178, 2249
SstI	GAGCTC	2 cut(s)	1098, 1422
StuI	AGGCCT	1 cut(s)	690
StyD4I	CCNGG	5 cut(s)	225, 226, 585, 613, 1000
StyI	CCWWGG	4 cut(s)	444, 1033, 1264, 2028
TaaI	ACNGT	4 cut(s)	854, 1719, 1934, 2040
TaiI	ACGT	3 cut(s)	584, 1931, 2195
TaqI	TCGA	9 cut(s)	73, 578, 736, 1139, 1389, 1557, 1877, 2115, 2142
TaqII	GACCGA	1 cut(s)	1883
TatI	WGTACW	3 cut(s)	76, 479, 1828
TauI	GCSGC	3 cut(s)	46, 49, 1023
Tru1I	TTAA	7 cut(s)	1335, 1524, 1569, 1737, 2198, 2268, 2272
Tru9I	TTAA	7 cut(s)	1335, 1524, 1569, 1737, 2198, 2268, 2272
TscAI	CASTG	5 cut(s)	57, 336, 1920, 2043, 2100
TseFI	GTSAC	6 cut(s)	364, 448, 529, 854, 980, 1541
TseI	GCWGC	4 cut(s)	1204, 1629, 1757, 1760
Tsp45I	GTSAC	6 cut(s)	364, 448, 529, 854, 980, 1541
TspDTI	ATGAA	9 cut(s)	11, 116, 132, 699, 1340, 1555, 1657, 2229, 2243
TspGWI	ACGGA	2 cut(s)	1491, 2183
TspMI	CCCGGG	1 cut(s)	226
TspRI	CASTG	5 cut(s)	57, 336, 1920, 2043, 2100
Tth111I	GACNNNGTC	1 cut(s)	860
Van91I	CCANNNNNTGG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	998
XapI	RAATTY	3 cut(s)	1350, 1401, 2118
XceI	RCATGY	3 cut(s)	780, 906, 960
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1831
XhoI	CTCGAG	1 cut(s)	1388
XmaI	CCCGGG	1 cut(s)	226
XmiI	GTMKAC	2 cut(s)	929, 2142
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	6 cut(s)	357, 543, 1655, 2072, 2178, 2249
ZrmI	AGTACT	1 cut(s)	78
Zsp2I	ATGCAT	3 cut(s)	148, 958, 1128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.