RchiOBHm_Chr5g0017321

Wall-associated receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000066
Physical Location & Seq
Reverse (-)
12009182 .. 12013450
4269 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29762

Sequence Viewer

Length: 2490 bp
ATGGCCTCATTACATGAGAGGATTCTTGTTACGCTGCTCTCTTTGTTAATGTTAGTGGCCGCAACAACAACATTGCTAGCAGCGGCGCAGACCCTAGTGCCGTCTCCTCAAGCCAAGCCAGGATGCCGAGAGAAGTGCGGTGGTCTCACAATCCCATACCCGTTTGGCCTAGGCGAAGCTTGTTCCATGCGACCCGAGTTCACCATCACTTGCGATGAATCCACCACAGCACCCCATCAGCAAACTTTACAAACAGAGATAGCCAGAAATTGCTATGACGAGGAGGGTTACAGTACAAACAGCAGCAGTTCACTCGAGCTGCCTCCTTCTTACACCATCTCAACCAAAAACAACTTCTTTACCCTTGGCTGTAACGTTTTAGCAGTCTATCTGCAGGGTGTGGATGTGGGCTACCAAACCGGAGTAAATGTGGCCTTATGTACGGATATTCTTGGCAAGGAATTGACCGAGTCTTGCATCGGCGTTGGGTGCGCCCAAACTTCCATCCCTAGTGGACTGCAAAACATTTCAATTGCAGTGGCTTCACTTAACGACGGCTATAACGCGAGTGATCCCTGGGTATCAAACTACAAGTGCAGCTACGCTTTCATCGTTGAAGAAGGCAACTTCACATTCGCACCGAAAACAAGTTTTCAACAACTGAATACAACAATTCAGCAGCTTCCGGTGGCTGTTAATTGGGCAATCGGGGACGAGCCATGTGAAGTAGCGAAGAACCTAACTGATTATTCGTGCAAAGAGAATACAATTTGTGTCGACCGGAGTACCATCACTAATGAGACGGCTGCAGGTTACATTTGCCGGTGCTTGCCAGGCTACGAAGGGAACCCATACCTCGGTTGTCGAGATATCGATGAGTGCGCGACCTCATCAAGCGACCCCTGCACGAATGGAAAGTGCGTAAATTCTCCAGGAAATTACTCGTGTAAATGTAATAAAGGCTTCAGCAACCAAGATCACAGGACTTGCATCTCATATTCCTGGTCAAACAACACTTCCCTAAAAATATCATTAGTTGCCTTGAAAATGAAATCTCGCCCGTTTGGATCTGGGTTGCACCAAGAGGCTTTTTTTTATTATTTTTTTATTTTTATAAATTTAAAGAGGGGTAAGAAGGGAAATATAAAAGATCAAATTTTTATGAATTTTTCTGCTCACACGTGGCAAGTTATGAGTGAGTGCACTAAGTGTGAGCCTAGCACTCTTCACCTCAGATATTTCATTTTTCAATTATGTGCAGGTGTCAGTATAAGCTTCTTGGTTTTAGTGGTCTTGATTTCGTGGATATATTGGGAAATGAACAAAAGAAGGCTCATCAAACTCAAAAAGAAGTACTTCAAAGAAAACGGTGGCTTAACATTACAACAACAACTCGCTAGTCATGGAGGAGCCGTGGAAACAGCAAAAATCTTTACAGCGGAAGAACTTGAGAAGGCGACAAACAATTACCATGCAGATGAGATTCTTGGTGAAGGAGCCTATGGAACAGTTTACAAAGGAACTCTACCTGATAAGAAAGTTGTTGCCATAAAAAAATCAAAAATTGGCGCCCCAACTCAAAGTGAGCAGTTCGTTAATGAGGTTATCGTTCTCTCTCAAATCAACCACAGAAATGTAGTAAAACTATTGGGTTGTTGTTTCGAGACTGAAGTGCCTTTACTAGTTTATGAGTATATTACCCATGGCACTCTTTTTGAGCATATATTCAATAAGGGAAAAGGATCACCGCTTTCATTGGAATTACGATTGAAGATAGCATCAGAAACGGCAGGGGCACTAGCTTACTTACACTCCTCTACTTCCACACCAATCATACATCGAGACGTGAAAGCAACAAATATACTATTAGATGACAATTACACGGCCAAAGTGTCCGATTTTGGAGCTTCGCGTTTCATTCCTTTAGATCAAACTGAACTAGCAACACTAGTGCAAGGGACGCTTGGCTACTTGGACCCTGAATACTTTCATTCTAATCAACTGACTGAAAAGAGTGACGTCTACAGCTTTGGAGTTGTCCTAGCAGAGTTATTAACGAGCAGAGTGGCACTTTCTTTCGCTAGACCTGACGCAGAGAGATGCCTAGCAAGTTTCTTTGTTTCTTCAGTAGAGAAAGATTGCTTGATTGAAATTCTTGACGCTGACATAGTGAATGAGGGGAACATAGACACAGCAGAGCAAGTTGCTTATCTCGCAAAAAGATGTCTAGGGATAAGAGGGGAGGAAAGGCCTTCAATGAAAGAAGTGGCCATGGAGTTGGAGGGAATGCAAAATACAGCGAAGCATCCATGGCGAAATAATGCAAATTTATGTCCCGAGGAGACTGAGTACTTGCTGGGCTCACCTATAAATTCAGAAGCTTACATTGTGAATGTTAAAGGTGATGGCGATGAAGGTTCTAGTGGTACAACAAGTGGGTATGACAGCATGCAAATTCAAATGTTAATGTCATATGATGATGCGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EGF EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK hEGF

Protein Analysis

829

Amino Acids

91.28

Weight (kDa)

5.35

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 42 - 80 6.1e-08 Wall-associated receptor kinase galacturonan-binding
EGF_CA PF07645 290 - 330 4.5e-07 Calcium-binding EGF domain
Pkinase PF00069 490 - 756 4.9e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 492 - 760 1.4e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1115
AarI CACCTGC 1 cut(s) 1250
AatII GACGTC 1 cut(s) 2022
Acc36I ACCTGC 2 cut(s) 800, 1250
AccB1I GGYRCC 1 cut(s) 1568
AccI GTMKAC 2 cut(s) 777, 2022
AccII CGCG 4 cut(s) 566, 884, 1912, 2485
AciI CCGC 5 cut(s) 60, 83, 138, 1439, 1748
AclI AACGTT 1 cut(s) 375
AclWI GGATC 3 cut(s) 566, 1075, 1750
AcoI YGGCCR 3 cut(s) 57, 1884, 2268
AcsI RAATTY 8 cut(s) 925, 1117, 1155, 1165, 2151, 2326, 2371, 2454
AcuI CTGAAG 3 cut(s) 949, 1689, 2109
AcvI CACGTG 1 cut(s) 1182
AcyI GRCGYC 2 cut(s) 1569, 2019
AdeI CACNNNGTG 1 cut(s) 1209
AfaI GTAC 6 cut(s) 295, 442, 787, 1355, 2351, 2428
AfiI CCNNNNNNNGG 1 cut(s) 857
AflIII ACRYGT 1 cut(s) 1179
AhlI ACTAGT 2 cut(s) 1681, 1948
AjiI CACGTC 1 cut(s) 1846
AjnI CCWGG 5 cut(s) 118, 575, 832, 931, 1001
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 9 cut(s) 179, 319, 600, 682, 1275, 1802, 1907, 2028, 2381
AluI AGCT 9 cut(s) 179, 319, 600, 682, 1275, 1802, 1907, 2028, 2381
Alw21I GWGCWC 1 cut(s) 1205
Alw26I GTCTC 6 cut(s) 108, 149, 794, 1658, 1836, 2336
Alw44I GTGCAC 1 cut(s) 1201
AlwI GGATC 3 cut(s) 566, 1075, 1750
Ama87I CYCGRG 3 cut(s) 194, 314, 2336
AoxI GGCC 7 cut(s) 3, 57, 166, 432, 1884, 2249, 2268
ApaLI GTGCAC 1 cut(s) 1201
ApeKI GCWGC 7 cut(s) 34, 80, 303, 319, 597, 679, 806
ApoI RAATTY 8 cut(s) 925, 1117, 1155, 1165, 2151, 2326, 2371, 2454
Asp700I GAANNNNTTC 2 cut(s) 1355, 1986
AspA2I CCTAGG 1 cut(s) 169
AspLEI GCGC 5 cut(s) 88, 494, 884, 1571, 2485
AspS9I GGNCC 1 cut(s) 1975
AsuHPI GGTGA 6 cut(s) 193, 1220, 1502, 1737, 2355, 2414
AsuNHI GCTAGC 1 cut(s) 76
AvaI CYCGRG 3 cut(s) 194, 314, 2336
AvaII GGWCC 1 cut(s) 1975
AvrII CCTAGG 1 cut(s) 169
BaeGI GKGCMC 2 cut(s) 1205, 1798
BaeI ACNNNNGTAYC 2 cut(s) 769, 802
BalI TGGCCA 1 cut(s) 2270
BanI GGYRCC 1 cut(s) 1568
BanII GRGCYC 1 cut(s) 2363
BarI GAAGNNNNNNTAC 2 cut(s) 1662, 1694
BauI CACGAG 1 cut(s) 943
BbrPI CACGTG 1 cut(s) 1182
Bbv12I GWGCWC 1 cut(s) 1205
BbvI GCAGC 7 cut(s) 21, 92, 306, 315, 609, 691, 793
BccI CCATC 6 cut(s) 212, 243, 344, 512, 797, 2399
BceAI ACGGC 6 cut(s) 85, 571, 819, 1397, 1803, 1899
BcgI CGANNNNNNTGC 4 cut(s) 117, 151, 295, 329
BciT130I CCWGG 5 cut(s) 120, 577, 834, 933, 1003
BcoDI GTCTC 6 cut(s) 108, 149, 794, 1658, 1836, 2336
BcuI ACTAGT 2 cut(s) 1681, 1948
BfmI CTRYAG 3 cut(s) 392, 807, 2023
BfoI RGCGCY 1 cut(s) 1572
BfuAI ACCTGC 2 cut(s) 800, 1250
BisI GCNGC 9 cut(s) 35, 60, 81, 84, 304, 320, 598, 680, 807
BlnI CCTAGG 1 cut(s) 169
BlsI GCNGC 9 cut(s) 36, 61, 82, 85, 305, 321, 599, 681, 808
BmcAI AGTACT 2 cut(s) 1355, 2351
Bme1390I CCNGG 5 cut(s) 120, 577, 834, 933, 1003
Bme18I GGWCC 1 cut(s) 1975
BmeT110I CYCGRG 3 cut(s) 194, 314, 2336
BmgBI CACGTC 1 cut(s) 1846
BmgT120I GGNCC 1 cut(s) 1975
BmiI GGNNCC 5 cut(s) 848, 1411, 1498, 1570, 1977
BmrFI CCNGG 5 cut(s) 120, 577, 834, 933, 1003
BmsI GCATC 7 cut(s) 113, 486, 999, 1787, 2090, 2314, 2470
BmtI GCTAGC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 915
BpuEI CTTGAG 2 cut(s) 93, 1469
Bsa29I ATCGAT 1 cut(s) 873
BsaAI YACGTR 1 cut(s) 1182
BsaHI GRCGYC 2 cut(s) 1569, 2019
BsaI GGTCTC 1 cut(s) 149
BsaWI WCCGGW 3 cut(s) 419, 685, 780
BsaXI ACNNNNNCTCC 8 cut(s) 414, 444, 1398, 1428, 1796, 1826, 2333, 2363
Bsc4I CCNNNNNNNGG 1 cut(s) 857
Bse118I RCCGGY 1 cut(s) 822
Bse3DI GCAATG 1 cut(s) 71
BseBI CCWGG 5 cut(s) 120, 577, 834, 933, 1003
BseCI ATCGAT 1 cut(s) 873
BseGI GGATG 4 cut(s) 128, 409, 504, 2305
BseLI CCNNNNNNNGG 1 cut(s) 857
BseMI GCAATG 1 cut(s) 71
BseMII CTCAG 2 cut(s) 1246, 2337
BseRI GAGGAG 5 cut(s) 96, 296, 1422, 1804, 2354
BseSI GKGCMC 2 cut(s) 1205, 1798
BseXI GCAGC 7 cut(s) 21, 92, 306, 315, 609, 691, 793
BseYI CCCAGC 1 cut(s) 2356
BsgI GTGCAG 3 cut(s) 616, 889, 1278
Bsh1236I CGCG 4 cut(s) 566, 884, 1912, 2485
Bsh1285I CGRYCG 1 cut(s) 781
BshFI GGCC 7 cut(s) 5, 59, 168, 434, 1886, 2251, 2270
BshNI GGYRCC 1 cut(s) 1568
BshVI ATCGAT 1 cut(s) 873
BsiEI CGRYCG 1 cut(s) 781
BsiHKAI GWGCWC 1 cut(s) 1205
BsiHKCI CYCGRG 3 cut(s) 194, 314, 2336
BsiSI CCGG 4 cut(s) 420, 686, 781, 823
BslFI GGGAC 3 cut(s) 725, 1972, 2319
BslI CCNNNNNNNGG 1 cut(s) 857
BsmAI GTCTC 6 cut(s) 108, 149, 794, 1658, 1836, 2336
BsmBI CGTCTC 3 cut(s) 108, 794, 1836
BsmFI GGGAC 3 cut(s) 725, 1972, 2319
BsmI GAATGC 1 cut(s) 2292
BsnI GGCC 7 cut(s) 5, 59, 168, 434, 1886, 2251, 2270
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 3 cut(s) 194, 314, 2336
Bsp1286I GDGCHC 3 cut(s) 1205, 1798, 2363
Bsp143I GATC 6 cut(s) 571, 976, 1067, 1150, 1742, 1927
Bsp19I CCATGG 3 cut(s) 1702, 2271, 2309
BspACI CCGC 5 cut(s) 60, 83, 138, 1439, 1748
BspANI GGCC 7 cut(s) 5, 59, 168, 434, 1886, 2251, 2270
BspCNI CTCAG 2 cut(s) 1245, 2338
BspDI ATCGAT 1 cut(s) 873
BspFNI CGCG 4 cut(s) 566, 884, 1912, 2485
BspLI GGNNCC 5 cut(s) 848, 1411, 1498, 1570, 1977
BspMAI CTGCAG 2 cut(s) 396, 811
BspMI ACCTGC 2 cut(s) 800, 1250
BspOI GCTAGC 1 cut(s) 80
BspPI GGATC 3 cut(s) 566, 1075, 1750
BspT107I GGYRCC 1 cut(s) 1568
BspTNI GGTCTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 822
BssAI RCCGGY 1 cut(s) 822
BssMI GATC 6 cut(s) 571, 976, 1067, 1150, 1742, 1927
BssNI GRCGYC 2 cut(s) 1569, 2019
BssSI CACGAG 1 cut(s) 943
BssT1I CCWWGG 5 cut(s) 169, 364, 1702, 2271, 2309
Bst2BI CACGAG 1 cut(s) 943
Bst2UI CCWGG 5 cut(s) 120, 577, 834, 933, 1003
Bst4CI ACNGT 3 cut(s) 293, 1370, 1510
Bst6I CTCTTC 1 cut(s) 1230
BstACI GRCGYC 2 cut(s) 1569, 2019
BstBAI YACGTR 1 cut(s) 1182
BstC8I GCNNGC 3 cut(s) 78, 830, 2450
BstDEI CTNAG 3 cut(s) 1206, 1232, 2346
BstDSI CCRYGG 4 cut(s) 1413, 1702, 2271, 2309
BstF5I GGATG 4 cut(s) 128, 409, 504, 2305
BstFNI CGCG 4 cut(s) 566, 884, 1912, 2485
BstH2I RGCGCY 1 cut(s) 1572
BstHHI GCGC 5 cut(s) 88, 494, 884, 1571, 2485
BstKTI GATC 6 cut(s) 574, 979, 1070, 1153, 1745, 1930
BstMAI GTCTC 6 cut(s) 108, 149, 794, 1658, 1836, 2336
BstMBI GATC 6 cut(s) 571, 976, 1067, 1150, 1742, 1927
BstMCI CGRYCG 1 cut(s) 781
BstMWI GCNNNNNNNGC 6 cut(s) 489, 834, 903, 1960, 2213, 2311
BstNI CCWGG 5 cut(s) 120, 577, 834, 933, 1003
BstNSI RCATGY 1 cut(s) 2452
BstSCI CCNGG 5 cut(s) 118, 575, 832, 931, 1001
BstSFI CTRYAG 3 cut(s) 392, 807, 2023
BstSLI GKGCMC 2 cut(s) 1205, 1798
BstUI CGCG 4 cut(s) 566, 884, 1912, 2485
BstV1I GCAGC 7 cut(s) 21, 92, 306, 315, 609, 691, 793
BstX2I RGATCY 1 cut(s) 1067
BstXI CCANNNNNNTGG 1 cut(s) 2278
BstYI RGATCY 1 cut(s) 1067
Bsu15I ATCGAT 1 cut(s) 873
BsuRI GGCC 7 cut(s) 5, 59, 168, 434, 1886, 2251, 2270
BsuTUI ATCGAT 1 cut(s) 873
BtgI CCRYGG 4 cut(s) 1413, 1702, 2271, 2309
BtgZI GCGATG 2 cut(s) 228, 2424
BtrI CACGTC 1 cut(s) 1846
BtsCI GGATG 4 cut(s) 128, 409, 504, 2305
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 1 cut(s) 543
BveI ACCTGC 2 cut(s) 800, 1250
Cac8I GCNNGC 3 cut(s) 78, 830, 2450
CfoI GCGC 5 cut(s) 88, 494, 884, 1571, 2485
Cfr10I RCCGGY 1 cut(s) 822
Cfr13I GGNCC 1 cut(s) 1975
ClaI ATCGAT 1 cut(s) 873
CseI GACGC 3 cut(s) 1969, 2099, 2168
Csp6I GTAC 6 cut(s) 294, 441, 786, 1354, 2350, 2427
CspCI CAANNNNNGTGG 2 cut(s) 519, 554
CviAII CATG 9 cut(s) 14, 187, 720, 1403, 1472, 1703, 2272, 2310, 2449
CviQI GTAC 6 cut(s) 294, 441, 786, 1354, 2350, 2427
DdeI CTNAG 3 cut(s) 1206, 1232, 2346
DinI GGCGCC 1 cut(s) 1570
DpnI GATC 6 cut(s) 573, 978, 1069, 1152, 1744, 1929
DpnII GATC 6 cut(s) 571, 976, 1067, 1150, 1742, 1927
DraI TTTAAA 1 cut(s) 1122
DraIII CACNNNGTG 1 cut(s) 1209
EaeI YGGCCR 3 cut(s) 57, 1884, 2268
Eam1104I CTCTTC 1 cut(s) 1230
EarI CTCTTC 1 cut(s) 1230
Eco130I CCWWGG 5 cut(s) 169, 364, 1702, 2271, 2309
Eco147I AGGCCT 1 cut(s) 2251
Eco24I GRGCYC 1 cut(s) 2363
Eco31I GGTCTC 1 cut(s) 149
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 1 cut(s) 1975
Eco57I CTGAAG 3 cut(s) 949, 1689, 2109
Eco72I CACGTG 1 cut(s) 1182
Eco88I CYCGRG 3 cut(s) 194, 314, 2336
EcoRII CCWGG 5 cut(s) 118, 575, 832, 931, 1001
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 5 cut(s) 169, 364, 1702, 2271, 2309
EcoT38I GRGCYC 1 cut(s) 2363
EgeI GGCGCC 1 cut(s) 1570
EheI GGCGCC 1 cut(s) 1570
ErhI CCWWGG 5 cut(s) 169, 364, 1702, 2271, 2309
Esp3I CGTCTC 3 cut(s) 108, 794, 1836
FaeI CATG 9 cut(s) 17, 190, 723, 1406, 1475, 1706, 2275, 2313, 2452
FalI AAGNNNNNCTT 4 cut(s) 1340, 1372, 1947, 1979
FaqI GGGAC 3 cut(s) 725, 1972, 2319
FatI CATG 9 cut(s) 13, 186, 719, 1402, 1471, 1702, 2271, 2309, 2448
FauNDI CATATG 1 cut(s) 2473
FblI GTMKAC 2 cut(s) 777, 2022
Fnu4HI GCNGC 9 cut(s) 35, 60, 81, 84, 304, 320, 598, 680, 807
FokI GGATG 4 cut(s) 135, 416, 491, 2292
FriOI GRGCYC 1 cut(s) 2363
Fsp4HI GCNGC 9 cut(s) 35, 60, 81, 84, 304, 320, 598, 680, 807
GlaI GCGC 5 cut(s) 87, 493, 883, 1570, 2484
GluI GCNGC 9 cut(s) 35, 60, 81, 84, 304, 320, 598, 680, 807
GsaI CCCAGC 1 cut(s) 2360
GsuI CTGGAG 1 cut(s) 915
HaeII RGCGCY 1 cut(s) 1572
HaeIII GGCC 7 cut(s) 5, 59, 168, 434, 1886, 2251, 2270
HapII CCGG 4 cut(s) 420, 686, 781, 823
HgaI GACGC 3 cut(s) 1969, 2099, 2168
HhaI GCGC 5 cut(s) 88, 494, 884, 1571, 2485
Hin1I GRCGYC 2 cut(s) 1569, 2019
Hin1II CATG 9 cut(s) 17, 190, 723, 1406, 1475, 1706, 2275, 2313, 2452
Hin6I GCGC 5 cut(s) 86, 492, 882, 1569, 2483
HinP1I GCGC 5 cut(s) 86, 492, 882, 1569, 2483
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HindIII AAGCTT 3 cut(s) 177, 1273, 2379
HinfI GANTC 4 cut(s) 22, 218, 470, 1483
HpaII CCGG 4 cut(s) 420, 686, 781, 823
HphI GGTGA 6 cut(s) 193, 1220, 1502, 1737, 2355, 2414
Hpy166II GTNNAC 7 cut(s) 201, 311, 515, 778, 1203, 1513, 2023
Hpy188I TCNGA 4 cut(s) 1235, 1783, 1897, 2377
Hpy188III TCNNGA 6 cut(s) 866, 1294, 1663, 1841, 2156, 2336
Hpy8I GTNNAC 7 cut(s) 201, 311, 515, 778, 1203, 1513, 2023
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 9 cut(s) 336, 614, 836, 1129, 1323, 1447, 1487, 2262, 2408
HpyCH4III ACNGT 3 cut(s) 293, 1370, 1510
HpyCH4IV ACGT 4 cut(s) 375, 1181, 1845, 2019
HpyF10VI GCNNNNNNNGC 6 cut(s) 489, 834, 903, 1960, 2213, 2311
HpyF3I CTNAG 3 cut(s) 1206, 1232, 2346
HpySE526I ACGT 4 cut(s) 375, 1181, 1845, 2019
Hsp92I GRCGYC 2 cut(s) 1569, 2019
Hsp92II CATG 9 cut(s) 17, 190, 723, 1406, 1475, 1706, 2275, 2313, 2452
HspAI GCGC 5 cut(s) 86, 492, 882, 1569, 2483
KasI GGCGCC 1 cut(s) 1568
Kzo9I GATC 6 cut(s) 571, 976, 1067, 1150, 1742, 1927
LmnI GCTCC 3 cut(s) 1409, 1496, 1904
Lsp1109I GCAGC 7 cut(s) 21, 92, 306, 315, 609, 691, 793
LweI GCATC 7 cut(s) 113, 486, 999, 1787, 2090, 2314, 2470
MaeII ACGT 4 cut(s) 375, 1181, 1845, 2019
MaeIII GTNAC 5 cut(s) 28, 287, 371, 812, 2015
MalI GATC 6 cut(s) 573, 978, 1069, 1152, 1744, 1929
MboI GATC 6 cut(s) 571, 976, 1067, 1150, 1742, 1927
MboII GAAGA 6 cut(s) 629, 745, 1217, 1454, 1783, 2115
MfeI CAATTG 1 cut(s) 531
MflI RGATCY 1 cut(s) 1067
MhlI GDGCHC 3 cut(s) 1205, 1798, 2363
MlsI TGGCCA 1 cut(s) 2270
MluNI TGGCCA 1 cut(s) 2270
Mly113I GGCGCC 1 cut(s) 1569
MlyI GAGTC 1 cut(s) 479
MmeI TCCRAC 1 cut(s) 2259
Mox20I TGGCCA 1 cut(s) 2270
MroXI GAANNNNTTC 2 cut(s) 1355, 1986
MscI TGGCCA 1 cut(s) 2270
MseI TTAA 9 cut(s) 47, 549, 696, 1121, 1376, 1596, 2054, 2397, 2465
MslI CAYNNNNRTG 2 cut(s) 1476, 1632
Msp20I TGGCCA 1 cut(s) 2270
MspA1I CMGCKG 2 cut(s) 83, 1439
MspI CCGG 4 cut(s) 420, 686, 781, 823
MspR9I CCNGG 5 cut(s) 120, 577, 834, 933, 1003
MunI CAATTG 1 cut(s) 531
Mva1269I GAATGC 1 cut(s) 2292
MvaI CCWGG 5 cut(s) 120, 577, 834, 933, 1003
MvnI CGCG 4 cut(s) 566, 884, 1912, 2485
MwoI GCNNNNNNNGC 6 cut(s) 489, 834, 903, 1960, 2213, 2311
NarI GGCGCC 1 cut(s) 1569
NcoI CCATGG 3 cut(s) 1702, 2271, 2309
NdeI CATATG 1 cut(s) 2473
NdeII GATC 6 cut(s) 571, 976, 1067, 1150, 1742, 1927
NheI GCTAGC 1 cut(s) 76
NlaIII CATG 9 cut(s) 17, 190, 723, 1406, 1475, 1706, 2275, 2313, 2452
NlaIV GGNNCC 5 cut(s) 848, 1411, 1498, 1570, 1977
NmeAIII GCCGAG 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 2015
NspI RCATGY 1 cut(s) 2452
PaeI GCATGC 1 cut(s) 2452
PaeR7I CTCGAG 1 cut(s) 314
PaqCI CACCTGC 1 cut(s) 1250
PasI CCCWGGG 1 cut(s) 576
PceI AGGCCT 1 cut(s) 2251
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PctI GAATGC 1 cut(s) 2292
PdmI GAANNNNTTC 2 cut(s) 1355, 1986
PfeI GAWTC 3 cut(s) 22, 218, 1483
PflFI GACNNNGTC 1 cut(s) 469
PfoI TCCNGGA 1 cut(s) 931
PkrI GCNGC 9 cut(s) 36, 61, 82, 85, 305, 321, 599, 681, 808
PleI GAGTC 1 cut(s) 478
PluTI GGCGCC 1 cut(s) 1572
PmaCI CACGTG 1 cut(s) 1182
PmlI CACGTG 1 cut(s) 1182
PpsI GAGTC 1 cut(s) 478
Ppu21I YACGTR 1 cut(s) 1182
PsiI TTATAA 1 cut(s) 1115
Psp1406I AACGTT 1 cut(s) 375
Psp6I CCWGG 5 cut(s) 118, 575, 832, 931, 1001
PspCI CACGTG 1 cut(s) 1182
PspFI CCCAGC 1 cut(s) 2356
PspGI CCWGG 5 cut(s) 118, 575, 832, 931, 1001
PspN4I GGNNCC 5 cut(s) 848, 1411, 1498, 1570, 1977
PspPI GGNCC 1 cut(s) 1975
PspXI VCTCGAGB 1 cut(s) 314
PstI CTGCAG 2 cut(s) 396, 811
PsuI RGATCY 1 cut(s) 1067
PsyI GACNNNGTC 1 cut(s) 469
RsaI GTAC 6 cut(s) 295, 442, 787, 1355, 2351, 2428
RsaNI GTAC 6 cut(s) 294, 441, 786, 1354, 2350, 2427
RseI CAYNNNNRTG 2 cut(s) 1476, 1632
SalI GTCGAC 1 cut(s) 776
SaqAI TTAA 9 cut(s) 47, 549, 696, 1121, 1376, 1596, 2054, 2397, 2465
SatI GCNGC 9 cut(s) 35, 60, 81, 84, 304, 320, 598, 680, 807
Sau3AI GATC 6 cut(s) 571, 976, 1067, 1150, 1742, 1927
Sau96I GGNCC 1 cut(s) 1975
ScaI AGTACT 2 cut(s) 1355, 2351
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 5 cut(s) 120, 577, 834, 933, 1003
SduI GDGCHC 3 cut(s) 1205, 1798, 2363
SfaNI GCATC 7 cut(s) 113, 486, 999, 1787, 2090, 2314, 2470
SfcI CTRYAG 3 cut(s) 392, 807, 2023
SfoI GGCGCC 1 cut(s) 1570
Sfr274I CTCGAG 1 cut(s) 314
SinI GGWCC 1 cut(s) 1975
SlaI CTCGAG 1 cut(s) 314
SmiMI CAYNNNNRTG 2 cut(s) 1476, 1632
SmlI CTYRAG 3 cut(s) 108, 314, 1448
SmoI CTYRAG 3 cut(s) 108, 314, 1448
SpeI ACTAGT 2 cut(s) 1681, 1948
SphI GCATGC 1 cut(s) 2452
SseBI AGGCCT 1 cut(s) 2251
SsiI CCGC 5 cut(s) 60, 83, 138, 1439, 1748
SspDI GGCGCC 1 cut(s) 1568
StuI AGGCCT 1 cut(s) 2251
StyD4I CCNGG 5 cut(s) 118, 575, 832, 931, 1001
StyI CCWWGG 5 cut(s) 169, 364, 1702, 2271, 2309
TaaI ACNGT 3 cut(s) 293, 1370, 1510
TaiI ACGT 4 cut(s) 378, 1184, 1848, 2022
TaqI TCGA 6 cut(s) 315, 777, 865, 873, 1662, 1840
TaqII GACCGA 1 cut(s) 482
TatI WGTACW 3 cut(s) 293, 1353, 2349
TauI GCSGC 2 cut(s) 62, 86
TfiI GAWTC 3 cut(s) 22, 218, 1483
Tru1I TTAA 9 cut(s) 47, 549, 696, 1121, 1376, 1596, 2054, 2397, 2465
Tru9I TTAA 9 cut(s) 47, 549, 696, 1121, 1376, 1596, 2054, 2397, 2465
TscAI CASTG 1 cut(s) 543
TseFI GTSAC 1 cut(s) 2015
TseI GCWGC 7 cut(s) 34, 80, 303, 319, 597, 679, 806
Tsp45I GTSAC 1 cut(s) 2015
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 1 cut(s) 543
Tth111I GACNNNGTC 1 cut(s) 469
VneI GTGCAC 1 cut(s) 1201
VpaK11BI GGWCC 1 cut(s) 1975
XapI RAATTY 8 cut(s) 925, 1117, 1155, 1165, 2151, 2326, 2371, 2454
XceI RCATGY 1 cut(s) 2452
XhoI CTCGAG 1 cut(s) 314
XmaJI CCTAGG 1 cut(s) 169
XmiI GTMKAC 2 cut(s) 777, 2022
XmnI GAANNNNTTC 2 cut(s) 1355, 1986
ZraI GACGTC 1 cut(s) 2020
ZrmI AGTACT 2 cut(s) 1355, 2351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.