RchiOBHm_Chr5g0016601

specification of plant organ axis polarity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000066
Physical Location & Seq
Reverse (-)
11430818 .. 11434121
3304 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29697

Sequence Viewer

Length: 2208 bp
ATGGCGTTGCGACTCTCATTGGTGGCAGTCCTACTCCTGTTATTGGTGGCTAGTACTACTACAACAACAGCAGCTGCTGCTCAAGCCCTGCCTGGTTGCTCAGACAAGTGCGGCAATCTCACAATTCCATACCCATTTGGCATGGAGGAGGGTTGTTACCTGCGAGAAGAATTCTTTATCAATTGTAGCAATACCACCCAACCACCAACAGCATATTTAAGAGCCAGCAATATCATTGTTACTAACATTTCCCTTGATGAAGGTGAGTTGCAAATATCCAACAACGTGGCTGAAGCTTGCTATAACGAGCAGGGCAATGTGACATCCAGCAAGGATTATTCGCTCGACCTGCCCTTTCCTTATACGATATCCGATACCAAAAACAAGTTCTACACTGTTGGTTGTGACACTTATTCAATTTTACAAGGCTTCCTAGGGGAAGATGAGTTCGATACGGGGTGCATTTCCATATGCAACGGGCTTGACATTGTTGATCAATATTCTTGCTCTGGCGCTGGGTGTTGCCAGACCAACATCCCCAGAGGGTTGAAAAATACGACGGCTTCGTTGTATACCATCAACGGTCATGAGGATATATGGGAATTTAACCCCTGCAGCTACGCCTTTATTGCAGAGCAAGGACAGTTCAATTTCTCTGCTGCAAGTGTAAAGAAACAGGACAAAAACTACCGGCTTCCAGCGGTTCTTAATTGGGCTATTGGGAATGACACAGACTCCTGTGCTGAAGCTCAAAAGAGGAAGGGTTTTGCTTGCACGGCTAATAGCAGGTGCGCCAACGCGCCTATCAATGGGTCTGTAGGTACTTGTGCCAGTGCTTATCTGGTTATGAAGGAAACCCCTACCATCCAAATGGTTGCCAAGTGCACGGCTTTAAACCCCTGCAATGGACTGAATGAAGTATGTATTAATTCACTAGGGAATTACTCTTGTTTATGTCGCAATGGCTACAAAAACAATGGCCCGAATGGAAAGTGCATCAAAGACAATTCCAGCGACCGTCTCCTGCTCATAATTCTTTCATTGGGCCTATTTGTGATTTTATTAGTTGGAAGTTTATGGATGTATTGGGGACTGAAGAAAAGGAAGTTCATAAAACTCAAAGAGAAGTACTTTACAGAAAATGGTGGTTTATTGTTAAAACAAAAACTCACTAGTCAAGGAGGATCTGTTGAGACAACCAAACTATTTACTGCAGAAGAACTTGAGAAGGCCACAAACAATTACCATGAAAGTAGAATCCTTGGTGAAGGAGGGTATGGAACAGTTTACAGAGGCATATTACCAGATAACCAAGTGGTTGCAATAAAAAAGTCCAAAGTTGGTGCCCCGACTCAAACTGATCAGTTTGTTAATGAGGTGATTGTTCTTTCTCAAGTCAACCATAGAAATGTAGTAAGGCTATTAGGTTGTTGTTTAGAGACAGAAGTCCCTTTACTAGTATACGAGTTCATCACCCAGGGCACTCTCTTTGAGCACATTCACAAGAAAAAGGGTAAAGGGTCATCACTTTCATGGGAACTCCGATTGAAGATAGCATCAGAAACTGCAGGAGCACTAGCATACTTGCACTCCTCCACTTCCACACCAATCATACACCGAGATGTGAAAACAATGAATATACTATTAGATGACAATTACACAGCCAAAGTGTCAGATTTTGGAGCTTCACGTTTCATTCCTATTGATCAAACTCAACTAGCAACAATGGTGCAAGGCACATTTGGATACTTGGACCCTGGATACTTCCATTCAAATCAACTAACAGAAAAGAGTGACGTCTATAGCTTTGGAGTGGTTCTAGCAGAGCTACTCACAAGTAAAGTGGCATTTTCTTTTGCAAGGGCTGAGGCAGAGAGATGCCTTGCACACTTTTTTGTTTGTTCGGTGGAAGATGGTCACTTGAACCAAATTCTATATGATGGCATTATTAAGGAAGGAGATATTGACCAGAGAGTAATAGAAAATGTGGCCCATCTTGCAAGAAGATGTTTGAGGGTAAAAGGGGAGGAAAGGCCTACCATGAGAGAAGTAGCCATGGAGCTAGAAGGAATGATTATGACAAAGCATCCACGGGGTTCTGCAGATCATTACTTCCCAGAAGAGACTACGCACTTGCTCGGATCACCTAATACTTCCAAGGATTATGTTGTGAATTTTGACGGTGATGGTGGTCCTGATATCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase_Tyr

Protein Analysis

735

Amino Acids

80.83

Weight (kDa)

5.79

Isoelectric Point (pI)

26.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 33 - 93 7.9e-11 Wall-associated receptor kinase galacturonan-binding
Pkinase PF00069 415 - 684 2.8e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 418 - 688 1.6e-43 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000066)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G21210 AT1G21230 AT1G21240 AT1G21240 AT1G21245 AT1G21250 AT1G21270 AT1G22720 AT3G25490
fragaria_vesca FvH4_2g35051 FvH4_2g35051 FvH4_2g35060 FvH4_3g10281 FvH4_3g10285 FvH4_3g10286 FvH4_3g10311 FvH4_3g10311 FvH4_3g10320 FvH4_3g10332 FvH4_3g10340 FvH4_3g10350 FvH4_3g10360 FvH4_3g10390 FvH4_3g10412 FvH4_3g10413 FvH4_3g10461 FvH4_3g10462 FvH4_3g10470 FvH4_3g10510 FvH4_3g10520 FvH4_3g10530 FvH4_3g10550 FvH4_3g10560 FvH4_3g10611 FvH4_3g11730 FvH4_6g53140 FvH4_6g53142 FvH4_7g31880 FvH4_7g31910 FvH4_7g31920
malus_domestica MD05G1269900.v1.1 MD05G1270000.v1.1 MD05G1270200.v1.1 MD05G1270400.v1.1 MD05G1270500.v1.1 MD05G1270600.v1.1 MD05G1270800.v1.1 MD05G1270900.v1.1 MD07G1183800.v1.1 MD08G1107600.v1.1 MD10G1248500.v1.1 MD10G1249200.v1.1 MD10G1249500.v1.1 MD10G1250000.v1.1 MD10G1250500.v1.1 MD10G1250900.v1.1 MD10G1251200.v1.1 MD10G1251400.v1.1 MD13G1004600.v1.1 MD15G1088400.v1.1
prunus_persica Prupe.1G442400_v2.0.a1 Prupe.1G442500_v2.0.a1 Prupe.2G223400_v2.0.a1 Prupe.4G091900_v2.0.a1 Prupe.4G093200_v2.0.a1 Prupe.4G093300_v2.0.a1 Prupe.4G093400_v2.0.a1 Prupe.4G093500_v2.0.a1 Prupe.4G094100_v2.0.a1 Prupe.4G094200_v2.0.a1 Prupe.4G094300_v2.0.a1 Prupe.6G358300_v2.0.a1
pyrus_communis pycom08g08990 pycom10g20660 pycom10g20670 pycom10g20680 pycom10g20710 pycom10g20740 pycom13g00400 pycom15g08290
rosa_chinensis RchiOBHm_Chr1g0326861 RchiOBHm_Chr1g0326871 RchiOBHm_Chr1g0331391 RchiOBHm_Chr1g0336911 RchiOBHm_Chr1g0364001 RchiOBHm_Chr2g0174541 RchiOBHm_Chr2g0175041 RchiOBHm_Chr2g0175101 RchiOBHm_Chr2g0175121 RchiOBHm_Chr3g0486331 RchiOBHm_Chr5g0015581 RchiOBHm_Chr5g0016551 RchiOBHm_Chr5g0016561 RchiOBHm_Chr5g0016581 RchiOBHm_Chr5g0016601 RchiOBHm_Chr5g0016611 RchiOBHm_Chr5g0016641 RchiOBHm_Chr5g0016661 RchiOBHm_Chr5g0016691 RchiOBHm_Chr5g0016701 RchiOBHm_Chr5g0016731 RchiOBHm_Chr5g0016741 RchiOBHm_Chr5g0016811 RchiOBHm_Chr5g0016841 RchiOBHm_Chr5g0016871 RchiOBHm_Chr5g0016881 RchiOBHm_Chr5g0016931 RchiOBHm_Chr5g0017021 RchiOBHm_Chr5g0017041 RchiOBHm_Chr5g0017071 RchiOBHm_Chr5g0017091 RchiOBHm_Chr5g0017121 RchiOBHm_Chr5g0017141 RchiOBHm_Chr5g0017291 RchiOBHm_Chr5g0017321 RchiOBHm_Chr5g0017401 RchiOBHm_Chr5g0019001 RchiOBHm_Chr5g0019071 RchiOBHm_Chr5g0028941 RchiOBHm_Chr5g0052141 RchiOBHm_Chr5g0054721 RchiOBHm_Chr5g0054801 RchiOBHm_Chr5g0054931 RchiOBHm_Chr5g0054941 RchiOBHm_Chr6g0259291 RchiOBHm_Chr6g0292991 RchiOBHm_Chr6g0306911
rosa_laevigata RLG00000009465 RLG00000009468 RLG00000010755 RLG00000011976 RLG00000014541 RLG00000014542 RLG00000015169 RLG00000022308 RLG00000027529 RLG00000029324 RLG00000030244 RLG00000030245 RLG00000032210 RLG00000032211 RLG00000032257 RLG00000032259 RLG00000032260 RLG00000032261 RLG00000032262 RLG00000032268 RLG00000032269 RLG00000032272 RLG00000032282 RLG00000032283 RLG00000032308 RLG00000032413 RLG00000033129 RLG00000034945
rosa_multiflora Rmu_co8241929.1_g000001 Rmu_co8269227.1_g000001 Rmu_co8461259.1_g000001 Rmu_co8495385.1_g000001 Rmu_sc0000028.1_g000003 Rmu_sc0000083.1_g000009 Rmu_sc0000083.1_g000010 Rmu_sc0000083.1_g000031 Rmu_sc0000083.1_g000043 Rmu_sc0000083.1_g000046 Rmu_sc0000083.1_g000047 Rmu_sc0000563.1_g000024 Rmu_sc0000842.1_g000012 Rmu_sc0001235.1_g000001 Rmu_sc0001235.1_g000005 Rmu_sc0001235.1_g000009 Rmu_sc0001235.1_g000015 Rmu_sc0001235.1_g000016 Rmu_sc0001235.1_g000017 Rmu_sc0001473.1_g000036 Rmu_sc0001607.1_g000016 Rmu_sc0001788.1_g000006 Rmu_sc0002018.1_g000008 Rmu_sc0002028.1_g000001 Rmu_sc0002680.1_g000011 Rmu_sc0002798.1_g000023 Rmu_sc0002886.1_g000023 Rmu_sc0002989.1_g000012 Rmu_sc0003064.1_g000009 Rmu_sc0003382.1_g000006 Rmu_sc0003630.1_g000002 Rmu_sc0003630.1_g000047 Rmu_sc0003630.1_g000066 Rmu_sc0003630.1_g000067 Rmu_sc0003649.1_g000010 Rmu_sc0003688.1_g000005 Rmu_sc0003920.1_g000007 Rmu_sc0004765.1_g000007 Rmu_sc0004765.1_g000008 Rmu_sc0004920.1_g000011 Rmu_sc0005223.1_g000008 Rmu_sc0005223.1_g000010 Rmu_sc0005223.1_g000015 Rmu_sc0005223.1_g000016 Rmu_sc0005319.1_g000014 Rmu_sc0005319.1_g000015 Rmu_sc0005319.1_g000018 Rmu_sc0005319.1_g000019 Rmu_sc0005319.1_g000025 Rmu_sc0005418.1_g000007 Rmu_sc0005418.1_g000012 Rmu_sc0006106.1_g000011 Rmu_sc0006914.1_g000012 Rmu_sc0007023.1_g000001 Rmu_sc0007662.1_g000001 Rmu_sc0007920.1_g000002 Rmu_sc0007920.1_g000013 Rmu_sc0008053.1_g000016 Rmu_sc0008053.1_g000017 Rmu_sc0008053.1_g000018 Rmu_sc0008053.1_g000023 Rmu_sc0008053.1_g000050 Rmu_sc0009042.1_g000007 Rmu_sc0009042.1_g000008 Rmu_sc0010642.1_g000008 Rmu_sc0011109.1_g000002 Rmu_sc0011314.1_g000006 Rmu_sc0011974.1_g000006 Rmu_sc0012179.1_g000009 Rmu_sc0015169.1_g000001 Rmu_sc0016368.1_g000002 Rmu_sc0022659.1_g000001 Rmu_sc0027371.1_g000001 Rmu_sc0028213.1_g000001 Rmu_sc0034526.1_g000001 Rmu_sc0039366.1_g000002 Rmu_ssc0000050.1_g000084 Rmu_ssc0000050.1_g000088 Rmu_ssc0000167.1_g000017
rosa_roxburghii Rroxscaffold_1G00011340 Rroxscaffold_1G00025710 Rroxscaffold_1G00025870 Rroxscaffold_1G00026070 Rroxscaffold_1G00026170 Rroxscaffold_1G00026200 Rroxscaffold_1G00026270 Rroxscaffold_1G00050950 Rroxscaffold_1G00058900 Rroxscaffold_1G00060040 Rroxscaffold_1G00060060 Rroxscaffold_1G00060070 Rroxscaffold_1G00060080 Rroxscaffold_1G00060110 Rroxscaffold_1G00060120 Rroxscaffold_1G00060140 Rroxscaffold_1G00060170 Rroxscaffold_1G00060210 Rroxscaffold_1G00060220 Rroxscaffold_1G00060240 Rroxscaffold_1G00060250 Rroxscaffold_1G00060260 Rroxscaffold_1G00060300 Rroxscaffold_1G00060320 Rroxscaffold_1G00060330 Rroxscaffold_1G00060900 Rroxscaffold_1G00060920 Rroxscaffold_1G00073980 Rroxscaffold_2G00077560 Rroxscaffold_2G00077580 Rroxscaffold_2G00146990 Rroxscaffold_3G00236200 Rroxscaffold_3G00236210 Rroxscaffold_3G00236220 Rroxscaffold_4G00292760 Rroxscaffold_4G00315200 Rroxscaffold_4G00315240 Rroxscaffold_4G00326240 Rroxscaffold_4G00328980 Rroxscaffold_5G00341890 Rroxscaffold_7G00161350 Rroxscaffold_7G00174490 Rroxscaffold_7G00206550
rosa_rugosa Rorug01G0093000 Rorug01G0093100 Rorug01G0128800 Rorug01G0312000 Rorug01G0312000 Rorug02G0581100 Rorug03G0224600 Rorug05G0028500 Rorug05G0032700 Rorug05G0032800 Rorug05G0032900 Rorug05G0032900 Rorug05G0033000 Rorug05G0033100 Rorug05G0033300 Rorug05G0033400 Rorug05G0033900 Rorug05G0034900 Rorug05G0035000 Rorug05G0046900 Rorug05G0047500 Rorug05G0047500 Rorug05G0111600 Rorug05G0287900 Rorug05G0288700 Rorug05G0586900 Rorug06G0231700 Rorug06G0354300 Rorug06G0354400
rosa_samantha Rh1DG122200 Rh2DG686800 Rh5BG136600 Rh6AG344500 Rh6BG351900 Rh6CG359000 Rh6CG359100 Rh6CG387600 Rh6CG480500 Rh6DG344600 Rh6DG467400
rosa_wichuraiana Rw0G010250 Rw0G014820 Rw0G021400 Rw0G023100 Rw1G009450 Rw1G012100 Rw1G012180 Rw1G028360 Rw2G054260 Rw3G024370 Rw3G024420 Rw3G024470 Rw5G010850 Rw5G011010 Rw5G011020 Rw5G011050 Rw5G011080 Rw5G011120 Rw5G012300 Rw5G018470 Rw5G033830 Rw6G008930 Rw6G030070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 777
AatII GACGTC 1 cut(s) 1800
Acc36I ACCTGC 3 cut(s) 168, 357, 777
AccB1I GGYRCC 1 cut(s) 1343
AccI GTMKAC 2 cut(s) 572, 1461
AccII CGCG 1 cut(s) 800
AciI CCGC 2 cut(s) 111, 701
AclWI GGATC 2 cut(s) 1192, 2149
AcsI RAATTY 4 cut(s) 170, 602, 1929, 2173
AcuI CTGAAG 3 cut(s) 312, 765, 1115
AcyI GRCGYC 1 cut(s) 1797
AfaI GTAC 3 cut(s) 55, 823, 1130
AfiI CCNNNNNNNGG 3 cut(s) 43, 809, 905
AgsI TTSAA 6 cut(s) 417, 550, 649, 1549, 1773, 1924
AhlI ACTAGT 2 cut(s) 1172, 1456
AjnI CCWGG 3 cut(s) 91, 1476, 1756
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AloI GAACNNNNNNTCC 2 cut(s) 431, 463
AluBI AGCT 8 cut(s) 74, 296, 618, 749, 1685, 1806, 1828, 2062
AluI AGCT 8 cut(s) 74, 296, 618, 749, 1685, 1806, 1828, 2062
Alw21I GWGCWC 3 cut(s) 887, 1497, 1576
Alw26I GTCTC 4 cut(s) 1025, 1187, 1433, 2117
Alw44I GTGCAC 1 cut(s) 883
AlwI GGATC 2 cut(s) 1192, 2149
AlwNI CAGNNNCTG 3 cut(s) 74, 77, 1565
AoxI GGCC 5 cut(s) 979, 1045, 1230, 1989, 2033
ApaLI GTGCAC 1 cut(s) 883
ApeKI GCWGC 5 cut(s) 71, 74, 77, 615, 659
ApoI RAATTY 4 cut(s) 170, 602, 1929, 2173
AseI ATTAAT 1 cut(s) 927
AspA2I CCTAGG 1 cut(s) 433
AspLEI GCGC 3 cut(s) 515, 794, 802
AspS9I GGNCC 5 cut(s) 980, 1045, 1753, 1990, 2192
AsuHPI GGTGA 6 cut(s) 275, 1277, 1390, 1465, 2136, 2195
AvaII GGWCC 2 cut(s) 1753, 2192
AvrII CCTAGG 1 cut(s) 433
BaeGI GKGCMC 3 cut(s) 887, 1348, 1484
BanI GGYRCC 1 cut(s) 1343
BarI GAAGNNNNNNTAC 2 cut(s) 1437, 1469
Bbv12I GWGCWC 3 cut(s) 887, 1497, 1576
BbvCI CCTCAGC 1 cut(s) 1866
BbvI GCAGC 5 cut(s) 61, 64, 83, 627, 646
BccI CCATC 6 cut(s) 584, 872, 1907, 1934, 2001, 2180
BceAI ACGGC 3 cut(s) 576, 792, 903
BciT130I CCWGG 3 cut(s) 93, 1478, 1758
BciVI GTATCC 2 cut(s) 1739, 1754
BclI TGATCA 3 cut(s) 493, 1360, 1705
BcoDI GTCTC 4 cut(s) 1025, 1187, 1433, 2117
BcuI ACTAGT 2 cut(s) 1172, 1456
BfaI CTAG 9 cut(s) 51, 434, 935, 1173, 1457, 1577, 1718, 1820, 2063
BfmI CTRYAG 6 cut(s) 613, 816, 1212, 1566, 1801, 2100
BfoI RGCGCY 1 cut(s) 516
BfuAI ACCTGC 3 cut(s) 168, 357, 777
BfuI GTATCC 2 cut(s) 1739, 1754
BisI GCNGC 6 cut(s) 72, 75, 78, 112, 616, 660
BlnI CCTAGG 1 cut(s) 433
BlsI GCNGC 6 cut(s) 73, 76, 79, 113, 617, 661
BmcAI AGTACT 2 cut(s) 55, 1130
Bme1390I CCNGG 3 cut(s) 93, 1478, 1758
Bme18I GGWCC 2 cut(s) 1753, 2192
BmgT120I GGNCC 5 cut(s) 980, 1045, 1753, 1990, 2192
BmiI GGNNCC 2 cut(s) 1345, 1755
BmrFI CCNGG 3 cut(s) 93, 1478, 1758
BmsI GCATC 4 cut(s) 1005, 1565, 1868, 2095
BoxI GACNNNNGTC 1 cut(s) 1445
Bpu10I CCTNAGC 1 cut(s) 1866
BpuEI CTTGAG 3 cut(s) 66, 1244, 1377
BsaHI GRCGYC 1 cut(s) 1797
BsaJI CCNNGG 8 cut(s) 433, 1261, 1476, 1477, 1756, 2055, 2090, 2157
BsaXI ACNNNNNCTCC 6 cut(s) 719, 749, 1173, 1203, 1574, 1604
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 809, 905
Bse118I RCCGGY 1 cut(s) 690
Bse1I ACTGG 1 cut(s) 831
Bse3DI GCAATG 3 cut(s) 322, 910, 967
BseBI CCWGG 3 cut(s) 93, 1478, 1758
BseDI CCNNGG 8 cut(s) 433, 1261, 1476, 1477, 1756, 2055, 2090, 2157
BseGI GGATG 5 cut(s) 323, 534, 864, 1086, 2086
BseLI CCNNNNNNNGG 3 cut(s) 43, 809, 905
BseMI GCAATG 3 cut(s) 322, 910, 967
BseMII CTCAG 2 cut(s) 114, 1857
BseNI ACTGG 1 cut(s) 831
BseRI GAGGAG 2 cut(s) 161, 1582
BseSI GKGCMC 3 cut(s) 887, 1348, 1484
BseXI GCAGC 5 cut(s) 61, 64, 83, 627, 646
BseYI CCCAGC 1 cut(s) 515
Bsh1236I CGCG 1 cut(s) 800
Bsh1285I CGRYCG 1 cut(s) 1018
BshFI GGCC 5 cut(s) 981, 1047, 1232, 1991, 2035
BshNI GGYRCC 1 cut(s) 1343
BsiEI CGRYCG 1 cut(s) 1018
BsiHKAI GWGCWC 3 cut(s) 887, 1497, 1576
BsiSI CCGG 1 cut(s) 691
BslFI GGGAC 2 cut(s) 1104, 1433
BslI CCNNNNNNNGG 3 cut(s) 43, 809, 905
BsmAI GTCTC 4 cut(s) 1025, 1187, 1433, 2117
BsmBI CGTCTC 1 cut(s) 1025
BsmFI GGGAC 2 cut(s) 1104, 1433
BsnI GGCC 5 cut(s) 981, 1047, 1232, 1991, 2035
Bsp1286I GDGCHC 5 cut(s) 887, 1348, 1484, 1497, 1576
Bsp143I GATC 6 cut(s) 493, 1184, 1360, 1705, 2104, 2141
Bsp19I CCATGG 1 cut(s) 2055
BspACI CCGC 2 cut(s) 111, 701
BspANI GGCC 5 cut(s) 981, 1047, 1232, 1991, 2035
BspCNI CTCAG 2 cut(s) 113, 1858
BspFNI CGCG 1 cut(s) 800
BspHI TCATGA 1 cut(s) 586
BspLI GGNNCC 2 cut(s) 1345, 1755
BspMAI CTGCAG 4 cut(s) 617, 1216, 1570, 2104
BspMI ACCTGC 3 cut(s) 168, 357, 777
BspPI GGATC 2 cut(s) 1192, 2149
BspT107I GGYRCC 1 cut(s) 1343
BsrDI GCAATG 3 cut(s) 322, 910, 967
BsrFI RCCGGY 1 cut(s) 690
BsrI ACTGG 1 cut(s) 831
BssAI RCCGGY 1 cut(s) 690
BssECI CCNNGG 8 cut(s) 433, 1261, 1476, 1477, 1756, 2055, 2090, 2157
BssMI GATC 6 cut(s) 493, 1184, 1360, 1705, 2104, 2141
BssNAI GTATAC 2 cut(s) 573, 1462
BssNI GRCGYC 1 cut(s) 1797
BssT1I CCWWGG 4 cut(s) 433, 1261, 2055, 2157
Bst1107I GTATAC 2 cut(s) 573, 1462
Bst2UI CCWGG 3 cut(s) 93, 1478, 1758
Bst4CI ACNGT 6 cut(s) 397, 584, 645, 1019, 1285, 2183
Bst6I CTCTTC 1 cut(s) 2115
BstACI GRCGYC 1 cut(s) 1797
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 3 cut(s) 226, 298, 772
BstDEI CTNAG 2 cut(s) 100, 1866
BstDSI CCRYGG 2 cut(s) 2055, 2090
BstF5I GGATG 5 cut(s) 323, 534, 864, 1086, 2086
BstFNI CGCG 1 cut(s) 800
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 3 cut(s) 515, 794, 802
BstKTI GATC 6 cut(s) 496, 1187, 1363, 1708, 2107, 2144
BstMAI GTCTC 4 cut(s) 1025, 1187, 1433, 2117
BstMBI GATC 6 cut(s) 493, 1184, 1360, 1705, 2104, 2141
BstMCI CGRYCG 1 cut(s) 1018
BstMWI GCNNNNNNNGC 6 cut(s) 77, 83, 349, 629, 776, 1997
BstNI CCWGG 3 cut(s) 93, 1478, 1758
BstPAI GACNNNNGTC 1 cut(s) 1445
BstSCI CCNGG 3 cut(s) 91, 1476, 1756
BstSFI CTRYAG 6 cut(s) 613, 816, 1212, 1566, 1801, 2100
BstSLI GKGCMC 3 cut(s) 887, 1348, 1484
BstUI CGCG 1 cut(s) 800
BstV1I GCAGC 5 cut(s) 61, 64, 83, 627, 646
BstX2I RGATCY 1 cut(s) 1184
BstXI CCANNNNNNTGG 2 cut(s) 286, 871
BstYI RGATCY 1 cut(s) 1184
BstZ17I GTATAC 2 cut(s) 573, 1462
BsuI GTATCC 2 cut(s) 1739, 1754
BsuRI GGCC 5 cut(s) 981, 1047, 1232, 1991, 2035
BtgI CCRYGG 2 cut(s) 2055, 2090
BtsCI GGATG 5 cut(s) 323, 534, 864, 1086, 2086
BtsIMutI CAGTG 2 cut(s) 393, 838
BveI ACCTGC 3 cut(s) 168, 357, 777
Cac8I GCNNGC 3 cut(s) 226, 298, 772
CaiI CAGNNNCTG 3 cut(s) 74, 77, 1565
CciI TCATGA 1 cut(s) 586
CfoI GCGC 3 cut(s) 515, 794, 802
Cfr10I RCCGGY 1 cut(s) 690
Cfr13I GGNCC 5 cut(s) 980, 1045, 1753, 1990, 2192
Csp6I GTAC 3 cut(s) 54, 822, 1129
CspCI CAANNNNNGTGG 2 cut(s) 1824, 1859
CviAII CATG 6 cut(s) 142, 587, 1247, 1533, 2041, 2056
CviQI GTAC 3 cut(s) 54, 822, 1129
DdeI CTNAG 2 cut(s) 100, 1866
DpnI GATC 6 cut(s) 495, 1186, 1362, 1707, 2106, 2143
DpnII GATC 6 cut(s) 493, 1184, 1360, 1705, 2104, 2141
DraI TTTAAA 1 cut(s) 894
Eam1104I CTCTTC 1 cut(s) 2115
EarI CTCTTC 1 cut(s) 2115
Eco130I CCWWGG 4 cut(s) 433, 1261, 2055, 2157
Eco147I AGGCCT 1 cut(s) 2035
Eco32I GATATC 2 cut(s) 369, 2200
Eco47I GGWCC 2 cut(s) 1753, 2192
Eco57I CTGAAG 3 cut(s) 312, 765, 1115
EcoRI GAATTC 1 cut(s) 170
EcoRII CCWGG 3 cut(s) 91, 1476, 1756
EcoRV GATATC 2 cut(s) 369, 2200
EcoT14I CCWWGG 4 cut(s) 433, 1261, 2055, 2157
ErhI CCWWGG 4 cut(s) 433, 1261, 2055, 2157
Esp3I CGTCTC 1 cut(s) 1025
FaeI CATG 6 cut(s) 145, 590, 1250, 1536, 2044, 2059
FaqI GGGAC 2 cut(s) 1104, 1433
FatI CATG 6 cut(s) 141, 586, 1246, 1532, 2040, 2055
FauNDI CATATG 1 cut(s) 470
FbaI TGATCA 3 cut(s) 493, 1360, 1705
FblI GTMKAC 2 cut(s) 572, 1461
Fnu4HI GCNGC 6 cut(s) 72, 75, 78, 112, 616, 660
FokI GGATG 5 cut(s) 310, 521, 851, 1093, 2073
Fsp4HI GCNGC 6 cut(s) 72, 75, 78, 112, 616, 660
FspBI CTAG 9 cut(s) 51, 434, 935, 1173, 1457, 1577, 1718, 1820, 2063
GlaI GCGC 3 cut(s) 514, 793, 801
GluI GCNGC 6 cut(s) 72, 75, 78, 112, 616, 660
GsaI CCCAGC 1 cut(s) 519
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 5 cut(s) 981, 1047, 1232, 1991, 2035
HapII CCGG 1 cut(s) 691
HhaI GCGC 3 cut(s) 515, 794, 802
Hin1I GRCGYC 1 cut(s) 1797
Hin1II CATG 6 cut(s) 145, 590, 1250, 1536, 2044, 2059
Hin6I GCGC 3 cut(s) 513, 792, 800
HinP1I GCGC 3 cut(s) 513, 792, 800
HincII GTYRAC 1 cut(s) 1399
HindII GTYRAC 1 cut(s) 1399
HindIII AAGCTT 1 cut(s) 294
HinfI GANTC 4 cut(s) 12, 734, 1257, 1351
HpaII CCGG 1 cut(s) 691
HphI GGTGA 6 cut(s) 275, 1277, 1390, 1465, 2136, 2195
Hpy166II GTNNAC 5 cut(s) 573, 885, 1288, 1399, 1462
Hpy188I TCNGA 6 cut(s) 103, 373, 1544, 1561, 1675, 2141
Hpy188III TCNNGA 2 cut(s) 587, 2195
Hpy8I GTNNAC 5 cut(s) 573, 885, 1288, 1399, 1462
Hpy99I CGWCG 1 cut(s) 562
HpyAV CCTTC 7 cut(s) 254, 754, 844, 1222, 1262, 1949, 2060
HpyCH4III ACNGT 6 cut(s) 397, 584, 645, 1019, 1285, 2183
HpyCH4IV ACGT 3 cut(s) 285, 1690, 1797
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 83, 349, 629, 776, 1997
HpyF3I CTNAG 2 cut(s) 100, 1866
HpySE526I ACGT 3 cut(s) 285, 1690, 1797
Hsp92I GRCGYC 1 cut(s) 1797
Hsp92II CATG 6 cut(s) 145, 590, 1250, 1536, 2044, 2059
HspAI GCGC 3 cut(s) 513, 792, 800
Ksp22I TGATCA 3 cut(s) 493, 1360, 1705
Kzo9I GATC 6 cut(s) 493, 1184, 1360, 1705, 2104, 2141
LmnI GCTCC 3 cut(s) 1571, 1682, 2059
Lsp1109I GCAGC 5 cut(s) 61, 64, 83, 627, 646
LweI GCATC 4 cut(s) 1005, 1565, 1868, 2095
MaeI CTAG 9 cut(s) 51, 434, 935, 1173, 1457, 1577, 1718, 1820, 2063
MaeII ACGT 3 cut(s) 285, 1690, 1797
MaeIII GTNAC 6 cut(s) 155, 238, 319, 404, 1793, 1916
MalI GATC 6 cut(s) 495, 1186, 1362, 1707, 2106, 2143
MboI GATC 6 cut(s) 493, 1184, 1360, 1705, 2104, 2141
MboII GAAGA 8 cut(s) 179, 452, 1108, 1229, 1561, 1922, 2016, 2132
MfeI CAATTG 1 cut(s) 181
MflI RGATCY 1 cut(s) 1184
MhlI GDGCHC 5 cut(s) 887, 1348, 1484, 1497, 1576
MlyI GAGTC 3 cut(s) 6, 728, 1345
MmeI TCCRAC 2 cut(s) 303, 1048
MseI TTAA 8 cut(s) 218, 606, 708, 893, 927, 1157, 1371, 1950
MslI CAYNNNNRTG 4 cut(s) 869, 1407, 1531, 1620
MspA1I CMGCKG 2 cut(s) 74, 701
MspI CCGG 1 cut(s) 691
MspR9I CCNGG 3 cut(s) 93, 1478, 1758
MunI CAATTG 1 cut(s) 181
MvaI CCWGG 3 cut(s) 93, 1478, 1758
MvnI CGCG 1 cut(s) 800
MwoI GCNNNNNNNGC 6 cut(s) 77, 83, 349, 629, 776, 1997
NcoI CCATGG 1 cut(s) 2055
NdeI CATATG 1 cut(s) 470
NdeII GATC 6 cut(s) 493, 1184, 1360, 1705, 2104, 2141
NlaIII CATG 6 cut(s) 145, 590, 1250, 1536, 2044, 2059
NlaIV GGNNCC 2 cut(s) 1345, 1755
NmuCI GTSAC 4 cut(s) 319, 404, 1793, 1916
PagI TCATGA 1 cut(s) 586
PaqCI CACCTGC 1 cut(s) 777
PasI CCCWGGG 1 cut(s) 1477
PceI AGGCCT 1 cut(s) 2035
PcsI WCGNNNNNNNCGW 1 cut(s) 563
PfeI GAWTC 1 cut(s) 1257
PkrI GCNGC 6 cut(s) 73, 76, 79, 113, 617, 661
PleI GAGTC 3 cut(s) 6, 728, 1345
PpsI GAGTC 3 cut(s) 6, 728, 1345
PshAI GACNNNNGTC 1 cut(s) 1445
PshBI ATTAAT 1 cut(s) 927
Psp6I CCWGG 3 cut(s) 91, 1476, 1756
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 3 cut(s) 91, 1476, 1756
PspN4I GGNNCC 2 cut(s) 1345, 1755
PspPI GGNCC 5 cut(s) 980, 1045, 1753, 1990, 2192
PstI CTGCAG 4 cut(s) 617, 1216, 1570, 2104
PstNI CAGNNNCTG 3 cut(s) 74, 77, 1565
PsuI RGATCY 1 cut(s) 1184
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 3 cut(s) 55, 823, 1130
RsaNI GTAC 3 cut(s) 54, 822, 1129
RseI CAYNNNNRTG 4 cut(s) 869, 1407, 1531, 1620
SaqAI TTAA 8 cut(s) 218, 606, 708, 893, 927, 1157, 1371, 1950
SatI GCNGC 6 cut(s) 72, 75, 78, 112, 616, 660
Sau3AI GATC 6 cut(s) 493, 1184, 1360, 1705, 2104, 2141
Sau96I GGNCC 5 cut(s) 980, 1045, 1753, 1990, 2192
ScaI AGTACT 2 cut(s) 55, 1130
SchI GAGTC 3 cut(s) 6, 728, 1345
ScrFI CCNGG 3 cut(s) 93, 1478, 1758
SduI GDGCHC 5 cut(s) 887, 1348, 1484, 1497, 1576
SfaNI GCATC 4 cut(s) 1005, 1565, 1868, 2095
SfcI CTRYAG 6 cut(s) 613, 816, 1212, 1566, 1801, 2100
SinI GGWCC 2 cut(s) 1753, 2192
SmiMI CAYNNNNRTG 4 cut(s) 869, 1407, 1531, 1620
SmlI CTYRAG 3 cut(s) 81, 1223, 1392
SmoI CTYRAG 3 cut(s) 81, 1223, 1392
SpeI ACTAGT 2 cut(s) 1172, 1456
SseBI AGGCCT 1 cut(s) 2035
SsiI CCGC 2 cut(s) 111, 701
SspI AATATT 1 cut(s) 500
SspMI CTAG 9 cut(s) 51, 434, 935, 1173, 1457, 1577, 1718, 1820, 2063
StuI AGGCCT 1 cut(s) 2035
StyD4I CCNGG 3 cut(s) 91, 1476, 1756
StyI CCWWGG 4 cut(s) 433, 1261, 2055, 2157
TaaI ACNGT 6 cut(s) 397, 584, 645, 1019, 1285, 2183
TaiI ACGT 3 cut(s) 288, 1693, 1800
TaqI TCGA 2 cut(s) 345, 450
TatI WGTACW 2 cut(s) 53, 1128
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 1 cut(s) 1257
Tru1I TTAA 8 cut(s) 218, 606, 708, 893, 927, 1157, 1371, 1950
Tru9I TTAA 8 cut(s) 218, 606, 708, 893, 927, 1157, 1371, 1950
TscAI CASTG 2 cut(s) 400, 838
TseFI GTSAC 4 cut(s) 319, 404, 1793, 1916
TseI GCWGC 5 cut(s) 71, 74, 77, 615, 659
Tsp45I GTSAC 4 cut(s) 319, 404, 1793, 1916
TspRI CASTG 2 cut(s) 400, 838
VneI GTGCAC 1 cut(s) 883
VpaK11BI GGWCC 2 cut(s) 1753, 2192
VspI ATTAAT 1 cut(s) 927
XapI RAATTY 4 cut(s) 170, 602, 1929, 2173
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XmaJI CCTAGG 1 cut(s) 433
XmiI GTMKAC 2 cut(s) 572, 1461
XspI CTAG 9 cut(s) 51, 434, 935, 1173, 1457, 1577, 1718, 1820, 2063
ZraI GACGTC 1 cut(s) 1798
ZrmI AGTACT 2 cut(s) 55, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.